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Items: 1 to 20 of 32

1.

ATAC-seq profiling of open chromatin with global epigenetic and transcriptional trends in two-line hybrid rice

(Submitter supplied) The transcriptional regulatory switches responsible for the mechanism of fertility conversion in two-line system of hybrid rice remain unclear. Here, we employed the ATAC-seq, combined with H3K9ac and H3K4me2 and gene expression analyses, in a rice PTGMS Line Wuxiang S to delineate an integrative chromatin accessibility profiling to uncover the key new regulatory modules in response to temperature fluctuation, which can provide important hypotheses regarding the mechanisms of fertility conversion. more...
Organism:
Oryza sativa
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL23013 GPL13160 GPL24468
28 Samples
Download data: BED, TXT, WIG
Series
Accession:
GSE114090
ID:
200114090

PubMed Full text in PMC Similar studies SRA Run Selector

2.

HiSeq X Ten (Oryza sativa)

Organism:
Oryza sativa
76 Series
1201 Samples
Download data
Platform
Accession:
GPL24468
ID:
100024468

3.

Illumina HiSeq 4000 (Oryza sativa)

Organism:
Oryza sativa
50 Series
575 Samples
Download data
Platform
Accession:
GPL23013
ID:
100023013

4.

Illumina HiSeq 2000 (Oryza sativa)

Organism:
Oryza sativa
116 Series
1890 Samples
Download data
Platform
Accession:
GPL13160
ID:
100013160

5.

SP4_ATAC_rep2

Organism:
Oryza sativa
Source name:
Sterility male of WXS at uninucleate period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132606
ID:
303132606

SRA Run Selector

6.

SP4_ATAC_rep1

Organism:
Oryza sativa
Source name:
Sterility male of WXS at uninucleate period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132605
ID:
303132605

SRA Run Selector

7.

FP4_ATAC_rep2

Organism:
Oryza sativa
Source name:
Fertility male of WXS at uninucleate period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132604
ID:
303132604

SRA Run Selector

8.

FP4_ATAC_rep1

Organism:
Oryza sativa
Source name:
Fertility male of WXS at uninucleate period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132603
ID:
303132603

SRA Run Selector

9.

SP3_ATAC_rep2

Organism:
Oryza sativa
Source name:
Sterility male of WXS at meiosis period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132602
ID:
303132602

SRA Run Selector

10.

SP3_ATAC_rep1

Organism:
Oryza sativa
Source name:
Sterility male of WXS at meiosis period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132601
ID:
303132601

SRA Run Selector

11.

FP3_ATAC_rep2

Organism:
Oryza sativa
Source name:
Fertility male of WXS at meiosis period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132600
ID:
303132600

SRA Run Selector

12.

FP3_ATAC_rep1

Organism:
Oryza sativa
Source name:
Fertility male of WXS at meiosis period
Platform:
GPL23013
Series:
GSE114090
Download data: BED
Sample
Accession:
GSM3132599
ID:
303132599

SRA Run Selector

13.

SP4_RNA-seq_rep3

Organism:
Oryza sativa
Source name:
Sterility male of WXS at uninucleate period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132626
ID:
303132626

SRA Run Selector

14.

SP4_RNA-seq_rep2

Organism:
Oryza sativa
Source name:
Sterility male of WXS at uninucleate period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132625
ID:
303132625

SRA Run Selector

15.

SP4_RNA-seq_rep1

Organism:
Oryza sativa
Source name:
Sterility male of WXS at uninucleate period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132624
ID:
303132624

SRA Run Selector

16.

SP3_RNA-seq_rep3

Organism:
Oryza sativa
Source name:
Sterility male of WXS at meiosis period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132623
ID:
303132623

SRA Run Selector

17.

SP3_RNA-seq_rep2

Organism:
Oryza sativa
Source name:
Sterility male of WXS at meiosis period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132622
ID:
303132622

SRA Run Selector

18.

SP3_RNA-seq_rep1

Organism:
Oryza sativa
Source name:
Sterility male of WXS at meiosis period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132621
ID:
303132621

SRA Run Selector

19.

FP4_RNA-seq_rep3

Organism:
Oryza sativa
Source name:
Fertility male of WXS at uninucleate period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132620
ID:
303132620

SRA Run Selector

20.

FP4_RNA-seq_rep2

Organism:
Oryza sativa
Source name:
Fertility male of WXS at uninucleate period
Platform:
GPL24468
Series:
GSE114090
Download data
Sample
Accession:
GSM3132619
ID:
303132619

SRA Run Selector

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