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Items: 1 to 20 of 61

1.

Subgenome-specific usage of transposable element-derived promoters and enhancers in bread wheat development

(Submitter supplied) Transcription start site (TSS) is the hub integrating regulatory input from promoters and enhancers. Common wheat converged three subgenomes adapted to different environment and established as a major crop worldwide. Detection of more precise and new TSS of both genes and enhancers in common wheat is the basis in interpreting transcriptional regulatory networks as well as the subgenome divergent regulation in their entirety.
Organism:
Triticum aestivum; Triticum urartu
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing
4 related Platforms
56 Samples
Download data: BED, BW, TXT
Series
Accession:
GSE198284
ID:
200198284
2.

HiSeq X Ten (Triticum aestivum)

Organism:
Triticum aestivum
2 Series
14 Samples
Download data
Platform
Accession:
GPL30963
ID:
100030963
3.

Illumina NovaSeq 6000 (Triticum urartu)

Organism:
Triticum urartu
5 Series
146 Samples
Download data
Platform
Accession:
GPL29754
ID:
100029754
4.

Illumina NovaSeq 6000 (Triticum aestivum)

Organism:
Triticum aestivum
49 Series
919 Samples
Download data
Platform
Accession:
GPL25409
ID:
100025409
5.

Illumina HiSeq 3000 (Triticum aestivum)

Organism:
Triticum aestivum
7 Series
47 Samples
Download data
Platform
Accession:
GPL24354
ID:
100024354
6.

AA_G1812_cage_embryo_rep2

Organism:
Triticum urartu
Source name:
fresh immature embryos (14days post anthesis)
Platform:
GPL29754
Series:
GSE198284
Download data: BED
Sample
Accession:
GSM6439058
ID:
306439058
7.

AA_G1812_cage_embryo_rep1

Organism:
Triticum urartu
Source name:
fresh immature embryos (14days post anthesis)
Platform:
GPL29754
Series:
GSE198284
Download data: BED
Sample
Accession:
GSM6439057
ID:
306439057
8.

RNAi2_srna_seq

Organism:
Triticum aestivum
Source name:
spikelets at booting stage (Feeke 10)
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM7496436
ID:
307496436
9.

RNAi1_srna_seq

Organism:
Triticum aestivum
Source name:
spikelets at booting stage (Feeke 10)
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM7496435
ID:
307496435
10.

CK_srna_seq

Organism:
Triticum aestivum
Source name:
spikelets at booting stage (Feeke 10)
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM7496434
ID:
307496434
11.

XX329_ale_rep1

Organism:
Triticum aestivum
Source name:
12-days seedling
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829449
ID:
306829449
12.

TAA_ale_rep1

Organism:
Triticum aestivum
Source name:
12-days seedling
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829448
ID:
306829448
13.

F2_2_ale_rep1

Organism:
Triticum aestivum
Source name:
spikelets
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829447
ID:
306829447
14.

33.3_6_ale_rep1

Organism:
Triticum aestivum
Source name:
spikelets
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829446
ID:
306829446
15.

33.3_5_ale_rep1

Organism:
Triticum aestivum
Source name:
spikelets
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829445
ID:
306829445
16.

33.1_5_ale_rep1

Organism:
Triticum aestivum
Source name:
spikelets
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829444
ID:
306829444
17.

G1812_seedling_ale_rep1

Organism:
Triticum aestivum
Source name:
12-days seedling
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829443
ID:
306829443
18.

100mix_ale_rep1

Organism:
Triticum aestivum
Source name:
12-days seedling
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829442
ID:
306829442
19.

cs_style_ale_rep1

Organism:
Triticum aestivum
Source name:
style
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829441
ID:
306829441
20.

cs_spikelet_I_ale_rep1

Organism:
Triticum aestivum
Source name:
spikelets at booting stage (Feeke 10)
Platform:
GPL25409
Series:
GSE198284
Download data: BW
Sample
Accession:
GSM6829440
ID:
306829440
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