GSE49816[Accession] - GEO DataSets - NCBI

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Select item 2000498161.

Evaluation of quantitative miRNA gene expression platforms in the microRNA Quality Control (miRQC) study

(Submitter supplied) MiRNAs are important negative regulators of protein coding gene expression, and have been studied intensively over the last few years. Several measurement platforms, designed to determine their relative RNA abundance levels in biological samples, have been developed. In this study, we systematically compared 12 commercially available miRNA expression platforms by measuring an identical set of 20 standardized positive and negative control samples, including human universal reference RNA, human brain RNA and titrations thereof, human serum samples, and synthetic spikes from miRNA family members with varying homology. more...

Organism:: Escherichia phage MS2; Homo sapiens

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL17561 GPL10999
20 Samples

Download data: TSV

Series

Accession:: GSE49816

ID:: 200049816

PubMed Similar studies SRA Run Selector

Select item 1000175612.

Illumina Genome Analyzer IIx (Enterobacterio phage MS2)

Organism:: Escherichia phage MS2

1 Series
4 Samples

Platform

Accession:: GPL17561

ID:: 100017561

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1103 Series
10072 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3012076624.

serum + spiked miRs variable concentration repeat

Organism:: Homo sapiens

Source name:: serum + spiked miRs variable concentration repeat

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207662

ID:: 301207662

SRA Run Selector

Select item 3012076615.

serum + spiked miRs variable concentration

Organism:: Homo sapiens

Source name:: serum + spiked miRs variable concentration

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207661

ID:: 301207661

SRA Run Selector

Select item 3012076606.

serum + spiked miRs constant concentration repeat

Organism:: Homo sapiens

Source name:: serum + spiked miRs constant concentration repeat

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207660

ID:: 301207660

SRA Run Selector

Select item 3012076597.

serum + spiked miRs constant concentration

Organism:: Homo sapiens

Source name:: serum + spiked miRs constant concentration

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207659

ID:: 301207659

SRA Run Selector

Select item 3012076548.

liver + miR-302d

Organism:: Homo sapiens

Source name:: liver + miR-302d

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207654

ID:: 301207654

SRA Run Selector

Select item 3012076539.

liver + miR-302c

Organism:: Homo sapiens

Source name:: liver + miR-302c

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207653

ID:: 301207653

SRA Run Selector

Select item 30120765210.

liver + miR-302b

Organism:: Homo sapiens

Source name:: liver + miR-302b

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207652

ID:: 301207652

SRA Run Selector

Select item 30120765111.

liver + miR-302a

Organism:: Homo sapiens

Source name:: liver + miR-302a

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207651

ID:: 301207651

SRA Run Selector

Select item 30120765012.

Organism:: Homo sapiens

Source name:: miRQC D repeat

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207650

ID:: 301207650

SRA Run Selector

Select item 30120764913.

Organism:: Homo sapiens

Source name:: miRQC D

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207649

ID:: 301207649

SRA Run Selector

Select item 30120764814.

Organism:: Homo sapiens

Source name:: miRQC C repeat

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207648

ID:: 301207648

SRA Run Selector

Select item 30120765815.

MS2 + let-7d-5p

Organism:: Escherichia phage MS2

Source name:: MS2 + let-7d-5p

Platform:: GPL17561
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207658

ID:: 301207658

SRA Run Selector

Select item 30120764716.

Organism:: Homo sapiens

Source name:: miRQC C

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207647

ID:: 301207647

SRA Run Selector

Select item 30120765717.

Organism:: Escherichia phage MS2

Source name:: MS2 + let-7c

Platform:: GPL17561
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207657

ID:: 301207657

SRA Run Selector

Select item 30120764618.

Organism:: Homo sapiens

Source name:: miRQC B repeat

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207646

ID:: 301207646

SRA Run Selector

Select item 30120765619.

MS2 + let-7b-5p

Organism:: Escherichia phage MS2

Source name:: MS2 + let-7b-5p

Platform:: GPL17561
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207656

ID:: 301207656

SRA Run Selector

Select item 30120764520.

Organism:: Homo sapiens

Source name:: miRQC B

Platform:: GPL10999
Series:: GSE49816

Download data: TSV

Sample

Accession:: GSM1207645

ID:: 301207645

SRA Run Selector

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