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Items: 18

1.

High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Schizosaccharomyces pombe
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array; Other
Platforms:
GPL6503 GPL8908 GPL13988
14 Samples
Download data: TSV, TXT
Series
Accession:
GSE56849
ID:
200056849

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Illumina HiSeq 2000 (Schizosaccharomyces pombe)

Organism:
Schizosaccharomyces pombe
114 Series
801 Samples
Download data
Platform
Accession:
GPL13988
ID:
100013988

3.

NCI S. pombe 44K C50

(Submitter supplied) Custom 60mer oligonucleotide array that represents alternately the plus and minus strands tiling a large portion of chromosome 2 and small segments of chromosome 1 and 3 at 50bp resolution. Included are following sections: chromosome 2 from position 1000000 to 3049820 and from 4491831 to 4541531 and small sections of chromosome 1 and 3. Protocol: Agilent's in situ synthesis printing; for details visit manufacturer's web site www.chem.agilent.com
Organism:
Schizosaccharomyces pombe
15 Series
60 Samples
Download data
Platform
Accession:
GPL8908
ID:
100008908

4.

Agilent-016010 S.pombe 4X44K_v3 (Feature Number version)

(Submitter supplied) Agilent 60mer oligo arrays tiling entire S. pombe genome across 3 chromsomes at 300bp interval alternately from the plus and minus strand. Choromosome locations in data table are based on assembled contigs at ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Chromosome_contigs/OLD/Sep_15_2004 Protocol: Custom 60mer oligonucleotide microarrays based upon Agilent’s non-contact in situ synthesis process
Organism:
Schizosaccharomyces pombe
46 Series
267 Samples
Download data
Platform
Accession:
GPL6503
ID:
100006503

5.

Psc3-GFP_G1_cells-v50_2007

Organism:
Schizosaccharomyces pombe
Source name:
input DNA (channel 1) Psc3 ChIP in cdc10-v50 cells (channel 2)
Platform:
GPL6503
Series:
GSE56848 GSE56849
Download data: TXT
Sample
Accession:
GSM1370194
ID:
301370194

6.

Psc3-GFP_clr4d_2007

Organism:
Schizosaccharomyces pombe
Source name:
input DNA (channel 1) Psc3 ChIP in clr4d cells (channel 2)
Platform:
GPL6503
Series:
GSE56848 GSE56849
Download data: TXT
Sample
Accession:
GSM1370193
ID:
301370193

7.

Psc3-GFP_WT_2007

Organism:
Schizosaccharomyces pombe
Source name:
input DNA (channel 1) Psc3 ChIP in wild-type cells (channel 2)
Platform:
GPL6503
Series:
GSE56848 GSE56849
Download data: TXT
Sample
Accession:
GSM1370192
ID:
301370192

8.

CGH_h+WT_Msmt0WT_2007

Organism:
Schizosaccharomyces pombe
Source name:
h+ wild-type (channel 1) Msmt0 wild-type (channel 2)
Platform:
GPL6503
Series:
GSE56847 GSE56849
Download data: TXT
Sample
Accession:
GSM1370191
ID:
301370191

9.

CGH_rad21-K1_WT_2007

Organism:
Schizosaccharomyces pombe
Source name:
wild-type (channel 1) rad21-K1 (channel 2)
Platform:
GPL6503
Series:
GSE56847 GSE56849
Download data: TXT
Sample
Accession:
GSM1370190
ID:
301370190

10.

clr4D_HIC

Organism:
Schizosaccharomyces pombe
Source name:
Clr4D cells
Platform:
GPL13988
Series:
GSE56849 GSE57316
Download data: TSV
Sample
Accession:
GSM1379431
ID:
301379431

SRA Run Selector

11.

rad21-K1_HIC

Organism:
Schizosaccharomyces pombe
Source name:
Cells with mutation in cohesin
Platform:
GPL13988
Series:
GSE56849 GSE57316
Download data: TSV
Sample
Accession:
GSM1379430
ID:
301379430

SRA Run Selector

12.

G1-arrested_HIC

Organism:
Schizosaccharomyces pombe
Source name:
G1 arrested cells in Cdc10 mutants
Platform:
GPL13988
Series:
GSE56849 GSE57316
Download data: TSV
Sample
Accession:
GSM1379429
ID:
301379429

SRA Run Selector

13.

Expression_pht1D

Organism:
Schizosaccharomyces pombe
Source name:
log. growing cells (channel 1) log. growing cells (channel 2)
Platform:
GPL8908
Series:
GSE56849 GSE57159
Download data: TXT
Sample
Accession:
GSM1376364
ID:
301376364

14.

999b_HIC

Organism:
Schizosaccharomyces pombe
Source name:
Asynchronously growing cells
Platform:
GPL13988
Series:
GSE56849 GSE57316
Download data
Sample
Accession:
GSM1379428
ID:
301379428

SRA Run Selector

15.

Expression_pht1D.rad21-K1

Organism:
Schizosaccharomyces pombe
Source name:
log. growing cells (channel 1) log. growing cells (channel 2)
Platform:
GPL8908
Series:
GSE56849 GSE57159
Download data: TXT
Sample
Accession:
GSM1376363
ID:
301376363

16.

999a_HIC

Organism:
Schizosaccharomyces pombe
Source name:
Asynchronously growing cells
Platform:
GPL13988
Series:
GSE56849 GSE57316
Download data: TSV
Sample
Accession:
GSM1379427
ID:
301379427

SRA Run Selector

17.

Expression_rad21-K1

Organism:
Schizosaccharomyces pombe
Source name:
log. growing cells (channel 1) log. growing cells (channel 2)
Platform:
GPL8908
Series:
GSE56849 GSE57159
Download data: TXT
Sample
Accession:
GSM1376362
ID:
301376362

18.

Expression_WT

Organism:
Schizosaccharomyces pombe
Source name:
log. growing cells (channel 1) log. growing cells (channel 2)
Platform:
GPL8908
Series:
GSE56849 GSE57159
Download data: TXT
Sample
Accession:
GSM1376361
ID:
301376361

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