GSM1308290[Accession] - GEO DataSets

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Items: 4

Select item 2000541191.

Validation experiment of copy number variations identified by next-generation sequencing in chickens

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Gallus gallus

Type:: Genome variation profiling by genome tiling array

Platforms:: GPL18174 GPL18175
11 Samples

Download data: PAIR, TXT

Series

Accession:: GSE54119

ID:: 200054119

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Select item 2000541182.

Validation experiment of copy number variations identified by next-generation sequencing in chickens (part 2)

(Submitter supplied) Copy number variation (CNV) is important and widespread in the genome, and is a major cause of disease and phenotypic diversity. Herein, we perform a genome-wide analysis of CNVs in the 12 diversified chicken genomes based on next-generation sequencing. We apply aCGH experiments to confirm our predicted CNVs. Results from aCGH agree well with our findings and the Pearson’s correlation values between the test and reference samples range from 0.644 to 0.722.