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Items: 1 to 20 of 82

1.

Deep sequencing of WNV isolates collected in Harris County, TX 2013-2016

(Submitter supplied) Harris County, Texas experienced its largest outbreak of West Nile (WNV) disease in 2014. Characterization WNV isolates from the outbreak using next generation sequencing approaches, phylogeny, and animal studies revealed a novel genotype characterized by selection of an amino acid substitution, NS2A-R188K. Retrospective analysis of Genbank showed this genotype was first identified in New York and Connecticut in 2008 and then in Texas subsequently. more...
Organism:
West Nile virus
Type:
Other
Platform:
GPL26196
30 Samples
Download data: TXT
Series
Accession:
GSE126555
ID:
200126555

SRA Run Selector

2.

DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods

(Submitter supplied) Viruses transmitted by small mammals and arthropods serve as global threats to humans. Most emergent and re-emergent viral agents are transmitted by these groups; therefore, the development of high-throughput screening methods for the detection and surveillance of such viruses is of great interest. In this study, we describe a DNA microarray platform that can be used for screening all viruses transmitted by small mammals and arthropods (SMAvirusChip) with nucleotide sequences that have been deposited in the GenBank. more...
Organism:
Aedes aegypti; Flaviviridae; Chikungunya virus; Rio Mamore hantavirus; Mucambo virus; Cacipacore virus; Iguape virus; Aedes albopictus; Togaviridae; Flavivirus; dengue virus type 2; Rhabdoviridae; Piry virus; Ilheus virus; Bussuquara virus; Rocio virus; dengue virus type 1; dengue virus type 3; St. Louis encephalitis virus; Yellow fever virus; Guaroa virus; Homo sapiens; Viruses; dengue virus type 4; West Nile virus; Dengue virus; Mayaro virus; Chlorocebus sabaeus; Zika virus; Oropouche virus
Type:
Expression profiling by array
Platforms:
GPL21870 GPL21871
87 Samples
Download data: GPR
Series
Accession:
GSE81393
ID:
200081393

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods

(Submitter supplied) Viruses transmitted by small mammals and arthropods serve as global threats to humans. Most emergent and re-emergent viral agents are transmitted by these groups; therefore, the development of high-throughput screening methods for the detection and surveillance of such viruses is of great interest. In this study, we describe a DNA microarray platform that can be used for screening all viruses transmitted by small mammals and arthropods (SMAvirusChip) with nucleotide sequences that have been deposited in the GenBank. more...
Organism:
Aedes albopictus; dengue virus type 2; Yellow fever virus; Piry virus; Chikungunya virus; Rio Mamore hantavirus; Cacipacore virus; Iguape virus; Aedes aegypti; Homo sapiens; Flavivirus; dengue virus type 4; Rhabdoviridae; Ilheus virus; Chlorocebus sabaeus; Bussuquara virus; Rocio virus; Flaviviridae; dengue virus type 3; Mucambo virus; Guaroa virus; Oropouche virus; Viruses; Togaviridae; dengue virus type 1; St. Louis encephalitis virus; West Nile virus; Dengue virus; Mayaro virus
Type:
Expression profiling by array
Platform:
GPL21870
80 Samples
Download data: GPR
Series
Accession:
GSE81391
ID:
200081391

PubMed Full text in PMC Similar studies Analyze with GEO2R

4.

The Microbial Detection Array for Detection of Emerging Viruses in Clinical Samples - A Useful Panmicrobial Diagnostic Tool--Array Version 2f

(Submitter supplied) Emerging viruses are usually endemic to tropical and sub-tropical regions of the world, but increased global travelling, climate changes and changes in lifestyle are believed to contribute to the spread of these viruses into new regions. For many of them, the disease symptoms are similar to each other, as well as to other more common diseases, making them difficult to diagnose. A rapid identification will help to decide about specific treatment and appropriate case management. more...
Organism:
dengue virus type 2; Yellow fever virus; Toscana virus; Usutu virus; Zaire ebolavirus; Eastern equine encephalitis virus; Dengue virus; synthetic construct; Mammarenavirus lassaense; Orthohantavirus dobravaense; Orthohantavirus puumalaense; Monkeypox virus; dengue virus type 4; West Nile virus; Rift Valley fever virus; Chikungunya virus; Human poliovirus sp.; Hepacivirus hominis; Orthohantavirus seoulense; Orthohantavirus sinnombreense; Cowpox virus; Orf virus; dengue virus type 1; dengue virus type 3; Japanese encephalitis virus; Tick-borne encephalitis virus; sandfly fever Sicilian virus; Marburgvirus; Sandfly fever Naples virus; Orthohantavirus hantanense; Orthonairovirus haemorrhagiae
Type:
Other
Platform:
GPL18370
64 Samples
Download data: PAIR
Series
Accession:
GSE55576
ID:
200055576

Analyze with GEO2R

5.

The Microbial Detection Array for Detection of Emerging Viruses in Clinical Samples - A Useful Panmicrobial Diagnostic Tool

(Submitter supplied) Emerging viruses are usually endemic to tropical and sub-tropical regions of the world, but increased global travelling, climate changes and changes in lifestyle are believed to contribute to the spread of these viruses into new regions. For many of them, the disease symptoms are similar to each other, as well as to other more common diseases, making them difficult to diagnose. A rapid identification will help to decide about specific treatment and appropriate case management. more...
Organism:
Cowpox virus; Orf virus; Marburgvirus; Orthohantavirus dobravaense; Monkeypox virus; West Nile virus; Yellow fever virus; Rift Valley fever virus; Toscana virus; sandfly fever Sicilian virus; Chikungunya virus; Human poliovirus sp.; Sandfly fever Naples virus; Orthohantavirus hantanense; Orthohantavirus seoulense; Orthohantavirus sinnombreense; Eastern equine encephalitis virus; dengue virus type 2; Dengue virus; synthetic construct; Usutu virus; Orthohantavirus puumalaense; Orthonairovirus haemorrhagiae; Zaire ebolavirus; Hepacivirus hominis; Mammarenavirus lassaense
Type:
Other
Platform:
GPL17919
42 Samples
Download data: PAIR
Series
Accession:
GSE52324
ID:
200052324

Analyze with GEO2R

6.

Viral Microarray

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Viruses; West Nile virus; Lassa virus Josiah; Chlorocebus aethiops; Homo sapiens; Human alphaherpesvirus 1; Zaire ebolavirus; SARS coronavirus Tor2; Vesicular stomatitis Indiana virus; Human adenovirus E4; Echovirus E18; artificial sequences; Influenza A virus (A/Texas/36/1991(H1N1))
Type:
Expression profiling by array
Platforms:
GPL10319 GPL10320
40 Samples
Download data: TXT
Series
Accession:
GSE21319
ID:
200021319

PubMed Full text in PMC Similar studies Analyze with GEO2R

7.

Viral Microarray - Cultured Virus Set

(Submitter supplied) Background: The analysis of oligonucleotide microarray data in pathogen surveillance and discovery assays is a challenging task. Target template concentration, nucleic acid integrity, and host nucleic acid composition can each have a profound effect on signal distribution. Exploratory analysis of fluorescent signal distribution in clinical samples has revealed deviations from normality, suggesting that distribution-free approaches should be applied. more...
Organism:
Vesicular stomatitis Indiana virus; Echovirus E18; Influenza A virus (A/Texas/36/1991(H1N1)); Lassa virus Josiah; Chlorocebus aethiops; Human alphaherpesvirus 1; Human adenovirus E4; Zaire ebolavirus; SARS coronavirus Tor2; Viruses; West Nile virus
Type:
Expression profiling by array
Platform:
GPL10320
11 Samples
Download data: TXT
Series
Accession:
GSE21318
ID:
200021318

PubMed Full text in PMC Similar studies Analyze with GEO2R

8.

Viral Microarray - Control Set

(Submitter supplied) Background: The analysis of oligonucleotide microarray data in pathogen surveillance and discovery assays is a challenging task. Target template concentration, nucleic acid integrity, and host nucleic acid composition can each have a profound effect on signal distribution. Exploratory analysis of fluorescent signal distribution in clinical samples has revealed deviations from normality, suggesting that distribution-free approaches should be applied. more...
Organism:
West Nile virus; Viruses; Homo sapiens; artificial sequences
Type:
Expression profiling by array
Platform:
GPL10319
29 Samples
Download data: TXT
Series
Accession:
GSE21317
ID:
200021317

PubMed Full text in PMC Similar studies Analyze with GEO2R

9.

Illumina HiSeq 1500 (West Nile virus)

Organism:
West Nile virus
1 Series
30 Samples
Download data
Platform
Accession:
GPL26196
ID:
100026196

10.

TX9631

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604404
ID:
303604404

SRA Run Selector

11.

TX9614

Organism:
West Nile virus
Source name:
Tyrannus forficatus (Scissor-Tailed Flycatcher)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604403
ID:
303604403

SRA Run Selector

12.

TX9604

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604402
ID:
303604402

SRA Run Selector

13.

TX9597

Organism:
West Nile virus
Source name:
Mimus polyglottos (Mocking Bird)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604401
ID:
303604401

SRA Run Selector

14.

TX9611

Organism:
West Nile virus
Source name:
Mimus polyglottos (Mocking Bird)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604400
ID:
303604400

SRA Run Selector

15.

TX9437

Organism:
West Nile virus
Source name:
Passer domesticus (House Sparrow)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604399
ID:
303604399

SRA Run Selector

16.

V05417

Organism:
West Nile virus
Source name:
Culex Quinquefasciatus
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604398
ID:
303604398

SRA Run Selector

17.

TX9410

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604397
ID:
303604397

SRA Run Selector

18.

TX10108

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604396
ID:
303604396

SRA Run Selector

19.

TX9981

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604395
ID:
303604395

SRA Run Selector

20.

TX9971

Organism:
West Nile virus
Source name:
Cyanocitta cristata (Blue Jay)
Platform:
GPL26196
Series:
GSE126555
Download data: TXT
Sample
Accession:
GSM3604394
ID:
303604394

SRA Run Selector

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