txid550[Organism:exp] - GEO DataSets

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Select item 2002160131.

High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality

(Submitter supplied) The Enterobacteriaceae are a scientifically and medically important clade of bacteria, containing the gut commensal and model organism Escherichia coli, as well as several major human pathogens including Salmonella enterica and Klebsiella pneumoniae. Essential gene sets have been determined for several members of the Enterobacteriaceae, and the E. coli Keio single-gene deletion library is often regarded as a gold standard for gene essentiality studies. more...

Organism:: Enterobacter cloacae; Escherichia coli; Salmonella enterica subsp. enterica serovar Typhimurium; Citrobacter rodentium; Salmonella enterica subsp. enterica serovar Enteritidis; Klebsiella pneumoniae

Type:: Other

8 related Platforms
13 Samples

Download data: TXT, XLSX

Series

Accession:: GSE216013

ID:: 200216013

Select item 2002675312.

The transcriptional response to low temperature is weakly conserved across Enterobacteriales

(Submitter supplied) Bacteria respond to changes in their external environment like temperature by changing the transcription of their genes, but we know little about how these regulatory patterns evolve. We used RNA-seq to study the transcriptional response of a shift from 37°C to 15°C in wild-type Escherichia coli, Salmonella enterica, Citrobacter rodentium, Enterobacter cloacae, Klebsiella pneumoniae, and Serratia marcescens, as well as ∆rpoS strains of E. more...

Organism:: Salmonella enterica; Citrobacter rodentium; Enterobacter cloacae; Escherichia coli; Klebsiella pneumoniae; Serratia marcescens

Type:: Expression profiling by high throughput sequencing

6 related Platforms
64 Samples

Download data: TXT

Series

Accession:: GSE267531

ID:: 200267531

Select item 2002186143.

Drug efflux and lipid A modification by 4-L-aminoarabinose are key mechanisms of polymyxin B resistance in the sepsis pathogen Enterobacter bugandensis

(Submitter supplied) To investigate the mechanism of PmB resistance and heteroresistance in Enterobacter bugandensis by analysing the differential gene expression under PmB treatment.

Organism:: Enterobacter cloacae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL32875
12 Samples

Download data: CSV

Series

Accession:: GSE218614

ID:: 200218614

PubMed Similar studies

Select item 2002457494.

TnpB homologs exapted from transposons are RNA-guided transcription factors

(Submitter supplied) Transposon-encoded tnpB and iscB genes encode RNA-guided DNA nucleases that promote their own selfish spread through targeted DNA cleavage and homologous recombination. These widespread gene families were repeatedly domesticated over evolutionary timescales, leading to the emergence of diverse CRISPR-associated nucleases including Cas9 and Cas12. We set out to test the hypothesis that TnpB nucleases may have also been repurposed for novel, unexpected functions other than CRISPR-Cas. more...

Organism:: Enterobacter cloacae; Escherichia coli; Enterobacter sp. BIDMC93

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other

4 related Platforms
51 Samples

Download data: BED, BW, XLSX

Series

Accession:: GSE245749

ID:: 200245749

PubMed Similar studies

Select item 2002361245.

Aminoglycoside heteroresistance in Enterobacter cloacae is driven by the cell envelope stress response.

(Submitter supplied) Enterobacter cloacae is a Gram-negative nosocomial pathogen of the ESKAPE priority group with increasing multi-drug resistance via the acquisition of resistance plasmids. However, E. cloacae can also display phenotypic antimicrobial resistance, such as heteroresistance or persistence. Here we report that E. cloacae ATCC 13047 and six strains isolated from patients with blood infections display heteroresistance or persistence to aminoglycosides. more...

Organism:: Enterobacter cloacae subsp. cloacae ATCC 13047

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33540
9 Samples

Download data: CSV

Series

Accession:: GSE236124

ID:: 200236124

Select item 2002171486.

Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae

(Submitter supplied) The transcriptional, epigenomic, and genomic profiles of K. pneumoniae isolates were characterised to identify novel colistin and carbapenem resistance mechanisms. The genomic DNA and total RNA of the isolates were isolated and sequenced on PacBio.

Organism:: Acinetobacter baumannii; Enterobacter asburiae; Enterobacter bugandensis; Enterobacter cloacae complex sp. R_G8; Enterobacter cloacae; Klebsiella pneumoniae

Type:: Expression profiling by high throughput sequencing; Other

12 related Platforms
22 Samples

Download data: CSV, DIFF, GFF, PDF

Series

Accession:: GSE217148

ID:: 200217148

Select item 2002085737.

Molecular Epidemiology of Enterobacterales Resistant to Antibiotics of Last Resort in Pregnant Women in Labour at a Tertiary Hospital

(Submitter supplied) This study aims to determine the epidemiology of Enterobacteriaceae resistant to antibiotics of last resort in pregnant women in labour at a tertiary hospital, Pretoria, South Africa. Rectal swabs shall be used to screen for colonisation with CRE and colistin-resistant Enterobacteriales in pregnant women during labour. Carbapenem and colistin-resistant Enterobacterales can cause the following infections: bacteraemia; nosocomial pneumonia; urinary tract infections, and intra-abdominal infections. more...

Organism:: Enterobacter roggenkampii; Enterobacter cloacae; Klebsiella pneumoniae

Type:: Methylation profiling by high throughput sequencing; Other

Platforms:: GPL27625 GPL32492 GPL32493
5 Samples

Download data: GFF, XLSX

Series

Accession:: GSE208573

ID:: 200208573

Select item 2001278028.

Colistin heteroresistance in Enterobacter cloacae is regualted by PhoPQ-dependent 4-amino-4-deoxy-L arabinose addition to lipid A

(Submitter supplied) We report the transcriptional expression from wild type, ΔphoPQ, and ΔpmrAB to understand their contribution to colistin resistance.

Organism:: Enterobacter cloacae subsp. cloacae ATCC 13047

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26251
3 Samples

Download data: XLS

Series

Accession:: GSE127802

ID:: 200127802

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000342779.

NextSeq 550 (Enterobacter cloacae)

Organism:: Enterobacter cloacae

1 Series
9 Samples

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Platform

Accession:: GPL34277

ID:: 100034277

Select item 10003354010.

Illumina NovaSeq 6000 (Enterobacter cloacae subsp. cloacae ATCC 13047)

Organism:: Enterobacter cloacae subsp. cloacae ATCC 13047

1 Series
9 Samples

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Platform

Accession:: GPL33540

ID:: 100033540

Select item 10003287511.

Illumina NextSeq 500 (Enterobacter cloacae)

Organism:: Enterobacter cloacae

2 Series
20 Samples

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Platform

Accession:: GPL32875

ID:: 100032875

Select item 10003275612.

Illumina MiSeq (Enterobacter cloacae)

Organism:: Enterobacter cloacae

2 Series
2 Samples

Download data

Platform

Accession:: GPL32756

ID:: 100032756

Select item 10003249213.

Sequel (Enterobacter cloacae)

Organism:: Enterobacter cloacae

2 Series
2 Samples

Download data

Platform

Accession:: GPL32492

ID:: 100032492

Select item 10002625114.

Illumina HiSeq 4000 (Enterobacter cloacae subsp. cloacae ATCC 13047)

Organism:: Enterobacter cloacae subsp. cloacae ATCC 13047

1 Series
3 Samples

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Platform

Accession:: GPL26251

ID:: 100026251

Select item 30665498315.

Enterobacter cloacae NCTC 9394 transposon mutant library

Organism:: Enterobacter cloacae

Source name:: NCTC 9394

Platform:: GPL32756
Series:: GSE216013

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Sample

Accession:: GSM6654983

ID:: 306654983

SRA Run Selector

Select item 30826833416.

E. cloacae wild-type, 15°C, replicate E

Organism:: Enterobacter cloacae

Source name:: ATCC13047

Platform:: GPL32875
Series:: GSE267531

Download data: TXT

Sample

Accession:: GSM8268334

ID:: 308268334

SRA Run Selector

Select item 30826832617.

E. cloacae wild-type, 37°C, replicate E

Organism:: Enterobacter cloacae

Source name:: ATCC13047

Platform:: GPL32875
Series:: GSE267531

Download data: TXT

Sample

Accession:: GSM8268326

ID:: 308268326

SRA Run Selector

Select item 30826831818.

E. cloacae wild-type, 15°C, replicate D

Organism:: Enterobacter cloacae

Source name:: ATCC13047

Platform:: GPL32875
Series:: GSE267531

Download data: TXT

Sample

Accession:: GSM8268318

ID:: 308268318

SRA Run Selector

Select item 30826831019.

E. cloacae wild-type, 37°C, replicate D

Organism:: Enterobacter cloacae

Source name:: ATCC13047

Platform:: GPL32875
Series:: GSE267531

Download data: TXT

Sample

Accession:: GSM8268310

ID:: 308268310

SRA Run Selector

Select item 30826830220.

E. cloacae wild-type, 15°C, replicate B

Organism:: Enterobacter cloacae

Source name:: ATCC13047

Platform:: GPL32875
Series:: GSE267531

Download data: TXT

Sample

Accession:: GSM8268302

ID:: 308268302

SRA Run Selector

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txid550[Organism:exp] (59)
GEO DataSets
Glaesserella parasuis strain GPS90 HBXG 2021-2 NODE_144_length_212_cov_311.82035...
Glaesserella parasuis strain GPS90 HBXG 2021-2 NODE_144_length_212_cov_311.820359, whole genome shotgun sequence
gi|2490871462|ref|NZ_JARUTY01000014 gnl|WGS:NZ_JARUTY01|NODE_144_length_212_cov_311.820359

Nucleotide
Enterococcus florum strain Gos25-1 sequence58, whole genome shotgun sequence
Enterococcus florum strain Gos25-1 sequence58, whole genome shotgun sequence
gi|1722730134|ref|NZ_BJCC01000058.1 |WGS:NZ_BJCC01|sequence58

Nucleotide
Enterococcus florum strain Gos25-1 sequence56, whole genome shotgun sequence
Enterococcus florum strain Gos25-1 sequence56, whole genome shotgun sequence
gi|1722730128|ref|NZ_BJCC01000056.1 |WGS:NZ_BJCC01|sequence56

Nucleotide
PREDICTED: Homo sapiens matrix metallopeptidase 28 (MMP28), transcript variant X...
PREDICTED: Homo sapiens matrix metallopeptidase 28 (MMP28), transcript variant X10, mRNA
gi|2462557510|ref|XM_054317182.1|

Nucleotide

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