txid85692[Organism:exp] - GEO DataSets

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Select item 2001975931.

The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Aegilops longissima; Triticum aestivum; Aegilops sharonensis; Aegilops speltoides; Amblyopyrum muticum; Triticum dicoccoides; Aegilops bicornis; Aegilops searsii

Type:: Expression profiling by high throughput sequencing; Other

8 related Platforms
122 Samples

Download data: TXT, VCF

Series

Accession:: GSE197593

ID:: 200197593

PubMed Full text in PMC Similar studies

Select item 2001974642.

The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum [WES]

(Submitter supplied) To reveal the origin of the wheat B sub-genome, we performed the whole genome sequencing of sitopsis species. Besides, we also conducted the RNA seq of Ae.speltoides and hexaploid wheat Chinese Spring.

Organism:: Aegilops searsii; Aegilops longissima; Aegilops sharonensis; Aegilops speltoides; Aegilops bicornis; Amblyopyrum muticum; Triticum dicoccoides

Type:: Other

7 related Platforms
47 Samples

Download data: VCF

Series

Accession:: GSE197464

ID:: 200197464

PubMed Full text in PMC Similar studies

Select item 2000476173.

Transcriptome modification to the BBAA subgenomes of common wheat since allohexaploidization is largely irreversible

(Submitter supplied) The three subgenomes (B, A and D) of common wheat (2n=6x=42) are largely intact, which makes extraction of the BBAA subgenomes as organismally independent genomes possible. Availability of such novel extracted tetraploid wheat (Extracted-tetra) provides a unique opportunity to study whether and to what extent the BBAA subgenomes of common wheat have been irreversibly modified, as well as its attendant biological consequences, during their evolutionary trajectory as allohexaploidy. more...

Organism:: Triticum turgidum subsp. durum; Triticum dicoccoides; Triticum aestivum; Triticum turgidum; Triticum carthlicum; Aegilops tauschii

Type:: Expression profiling by array

Platform:: GPL3802
33 Samples

Download data: CEL

Series

Accession:: GSE47617

ID:: 200047617

Analyze with GEO2R

Select item 2000259404.

Expression data from Y12-3 and A24-39 roots

(Submitter supplied) Roots adaptation to drought stress was analyzed using transcriptome and metabolomics profiles in two wild emmer wheat (Triticum turgidum ssp. dicoccoides) genotypes: Y12-3 (drought resistance) and A24-39 (drought susceptible).

Organism:: Triticum dicoccoides; Triticum aestivum

Type:: Expression profiling by array

Platform:: GPL3802
12 Samples

Download data: CEL

Series

Accession:: GSE25940

ID:: 200025940

Select item 2000317625.

Wild emmer wheat comparison of drought resistant vs. susceptible genotypes under terminal drought

(Submitter supplied) Six months old seed grown under well-watered greenhouse conditions were used in the current study. The seedlings of the two wild emmer wheat genotypes were vernalized on a moist germination paper (Hofman Manufacturing, Inc, Jefferson, OR, USA) for three weeks in the dark at 4oC, followed by three days acclimation at 24oC. Seedlings were then transplanted into 5L pots containing a mixture of pure quartz sand and peat (4:1 v/v), supplemented with a slow release fertilizer (2 g/L, Osmocote® Standard 14-14-14, Scotts-Sierra Horticulture, Marysville, OH, USA) and by a weekly application of 100 ml/pot of 0.5X Murashigi and Skoog growth solution (Sigma Chemical Co., St Louis, MO, USA). more...