Similar studies for GEO DataSets (Select 100003763) - GEO DataSets

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Items: 17

Select item 1000037631.

(Submitter supplied) Nylon macroarray (7 x 11 cm) with 6049 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5598 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases). Protocol: See Alberola et al. (2004), International Microbiology 7:199-206

Organism:: Saccharomyces cerevisiae

9 Series
83 Samples

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Platform

Accession:: GPL3763

ID:: 100003763

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Select item 1000067272.

Valencia yeast v6

(Submitter supplied) Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases). Protocol: See Alberola et al. (2004), International Microbiology 7:199-206

Organism:: Saccharomyces cerevisiae

6 Series
77 Samples

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Platform

Accession:: GPL6727

ID:: 100006727

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Select item 1000045663.

Valencia yeast v5

Organism:: Saccharomyces cerevisiae

3 Series
42 Samples

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Platform

Accession:: GPL4566

ID:: 100004566

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Select item 1000045654.

Valencia yeast v4

Organism:: Saccharomyces cerevisiae

11 Series
166 Samples

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Platform

Accession:: GPL4565

ID:: 100004565

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Select item 1000037755.

IBMMPMC_Scerevisiae_12.8k_EGT_G250E

(Submitter supplied) See Talla et al. 2003 (PMID : 14499002)

Organism:: Saccharomyces cerevisiae

1 Series
22 Samples

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Platform

Accession:: GPL3775

ID:: 100003775

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Select item 1000037746.

IBMMPMC_Scerevisiae_12.8k_EGT_D290C

(Submitter supplied) See Talla et al. 2003 (PMID : 14499002)

Organism:: Saccharomyces cerevisiae

1 Series
18 Samples

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Platform

Accession:: GPL3774

ID:: 100003774

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Select item 1000026037.

Eurogentec L090D Yeast ORFs

(Submitter supplied) The yeast 5803 ORFs MicroArray is composed of 32 subgrids, which follow a pattern of 8 metarows and 4 metacolumns. Each subgrid contains 20 columns and 20 rows with a dot spacing of 200 µm. Probes are spotted as closed duplicates. In order to provide a friendly environment, the first subgrid row on each array metarow contains all the normalization controls, which include the controls with serial dilution of the Renilla LuxA cDNA PCR product. more...

Organism:: Saccharomyces cerevisiae

3 Series
16 Samples

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Platform

Accession:: GPL2603

ID:: 100002603

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Select item 1000026028.

Eurogentec C060C Yeast ORFs

Organism:: Saccharomyces cerevisiae

1 Series
6 Samples

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Platform

Accession:: GPL2602

ID:: 100002602

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Select item 2000044509.

A comparison of high density oligonucleotide and PCR-based array platforms for chIP chip in yeast

(Submitter supplied) ChIP chip data was obtained for the factors Tec1, Ste12 and Sok2 in S. cerevisiae using high density oligonucleotide arrays. This data was then compared to results obtained previously for the same factors under the same growth conditions but using spotted PCR arrays (Borneman et al Genes Dev 2006). This showed the high density arrays to be more reproducible using fewer numbers of replicates. In addtion, the high density arrays provided increased accuracy, sensitivity and reproducibity when compared to the PCR arrays. more...

Organism:: Saccharomyces cerevisiae

Type:: Genome binding/occupancy profiling by genome tiling array

Platform:: GPL3541
9 Samples

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Series

Accession:: GSE4450

ID:: 200004450

Select item 20000197510.

Simultaneous genotyping, gene expression measurement, and detection of allele-specific expression

(Submitter supplied) By hybridizing mRNA to oligonucleotide arrays and searching for probes that are outliers in their probe set, we identify and genotype polymorhisms in two strains of yeast (BY, isogenic to S288C, and RM, a wild vineyard strain) and segregants from a cross between the two strains. We then use this mRNA based genotyping approach to study allele-specific expression in diploid hybrids from a cross between BY and RM. more...

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by array

Platform:: GPL90
28 Samples

Download data: CEL

Series

Accession:: GSE1975

ID:: 200001975

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10000126511.

SGDB Yeast

(Submitter supplied) Yeast S. cerevisiae microarrays from the SGDB (Ecole Normale Superieure, Paris, France). Yeast ORFs are deposited in duplicate (double genome). Probes are oligonucleotides (40mers) from the Yeast oligoset distributed by MWG Biotech. Keywords = yeast Keywords = transcriptome

Organism:: Saccharomyces cerevisiae

2 Series
5 Samples

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Platform

Accession:: GPL1265

ID:: 100001265

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Select item 20000936212.

Round up hi-load herbicide treatment for 2 h

(Submitter supplied) The number and type of synthetic chemicals that are being produced worldwide continues to increase significantly. While these industrial chemicals provide numerous benefits, there is no doubt that some have potential to damage the environment and health. Toxicity must be evaluated and use must be carefully controlled and monitored in order to minimize potential damage. DNA microarray technology has become an important new technique in toxicology. more...

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by array

Platforms:: GPL6004 GPL6003 GPL5994
3 Samples

Download data: GPR

Series

Accession:: GSE9362

ID:: 200009362

Select item 10000773413.

Eurogentec AG S. pombe ORF array 11k (spD080C)

(Submitter supplied) Schizosaccharomyces pombe 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray Reference: Xue Y, Haas SA, Brino L, Gusnanto A et al. A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 2004 Jan 15;21(1):25-39. PMID: 14745780 Protocol: Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). more...

Organism:: Schizosaccharomyces pombe

3 Series
3 Samples

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Platform

Accession:: GPL7734

ID:: 100007734

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Select item 10000342414.

Eurogentec AG S. pombe ORF array 11k (L040B)

(Submitter supplied) Schizosaccharomyces pombe 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray Protocol: Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. more...

Organism:: Schizosaccharomyces pombe

4 Series
14 Samples

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Platform

Accession:: GPL3424

ID:: 100003424

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Select item 10000194315.

Eurogentec AG S. pombe ORF array

(Submitter supplied) Schizosaccharomyces pombe 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray

Organism:: Schizosaccharomyces pombe

1 Series
2 Samples

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Platform

Accession:: GPL1943

ID:: 100001943

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Select item 20000294916.

CommercialWineYeastStrainsCGH

(Submitter supplied) Microarray karyotyping (aCGH) of three independent isolates each of four different commerical wine yeast strains was performed. Duplicate arrays (labeled "A" and "B") were performed for each isolate. An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract. Keywords: all_pairs

Organism:: Saccharomyces cerevisiae

Type:: Genome variation profiling by array

Platforms:: GPL2634 GPL2633
24 Samples

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Series

Accession:: GSE2949

ID:: 200002949

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Select item 20007885617.

Genomic instability induced by lowered expression of POL3 in yeast

(Submitter supplied) DNA replication stress (DRS)-linked genomic instability has emerged as an important factor driving cancer development. To understand the mechanisms of DRS-associated genomic instability and phenotypic evolution, we mapped chromosomal alterations in a yeast strain with lowered expression of the replicative DNA polymerase δ. At a whole-genome level, we identified both hotspots of mitotic recombination and chromosome-specific aneuploidy dependent on decreased levels of DNA polymerase δ. more...