Similar studies for GEO DataSets (Select 200026216) - GEO DataSets

(Submitter supplied) Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel cell-type specific gene expression during late stages of Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on laser-microdissected cells. We used Medicago GeneChips to detail the cell-type specific programme of gene expression in late stages of colonization by arbuscular mycorrhizal fungi and identified genes differentially expressed during these stages.

Organism:: Medicago sativa; Medicago truncatula; Sinorhizobium meliloti

Type:: Expression profiling by array

Platform:: GPL4652
9 Samples

Download data: CEL

Series

Accession:: GSE42747

ID:: 200042747

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000427466.

A roadmap of cell-type specific gene expression during early stages of the arbuscular mycorrhiza symbiosis

(Submitter supplied) Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel cell-type specific gene expression during early stages of Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on laser-microdissected cells. We used Medicago GeneChips to detail the cell-type specific programme of gene expression in early stages of colonization by arbuscular mycorrhizal fungi and identified genes differentially expressed during these stages.

Organism:: Medicago truncatula; Sinorhizobium meliloti; Medicago sativa

Type:: Expression profiling by array

Platform:: GPL4652
6 Samples

Download data: CEL

Series

Accession:: GSE42746

ID:: 200042746

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000322087.

Gene expression data from arbuscular mycorrhizal and phosphate-treated Medicago truncatula roots.

(Submitter supplied) Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel gene expression in Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on whole mycorrhizal roots. We used GeneChips to detail the global programme of gene expression in response to colonization by arbuscular mycorrhizal fungi and in response to a treatment with phosphate and identified genes differentially expressed during this process.

Organism:: Sinorhizobium meliloti; Medicago sativa; Medicago truncatula

Type:: Expression profiling by array

Platform:: GPL4652
12 Samples

Download data: CEL

Series

Accession:: GSE32208

ID:: 200032208

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000252608.

Identification of miRNAs and their target genes in developing seeds of soybean by deep sequencing

(Submitter supplied) In our study, small RNA library and degradome library were constructed from developing soybean seeds for deep sequencing. We identified 26 new miRNAs in soybean by bioinformatic analysis, and further confirmed their expression by stem-loop RT-PCR. The miRNA star sequences of 38 known miRNAs and 8 new miRNAs were also discovered, providing additional evidence for the existence of miRNAs. Through degradome sequencing, 145 and 25 genes were identified as targets of annotated miRNAs and new miRNAs, respectively. more...

Organism:: Glycine max

Type:: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platform:: GPL11192
2 Samples

Download data: TXT

Series

Accession:: GSE25260

ID:: 200025260

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000725949.

Identification of miRNAs and its targets using high-throughput sequencing and degradome analysis in male and female Asparagus officinalis.

(Submitter supplied) Two independent small RNA (sRNA) libraries from male and female asparagus plants were sequenced, generating 4.13 and 5.88 million final cleaned reads, respectively. A total of 154 conserved miRNA belonging to 26 families, and 40 novel miRNA candidates that seemed to be specific to asparagus were identified, among them, 63 miRNAs exhibited significant differential expression between male and female plants, and 36 target mRNAs representing 44 conserved and fournovel miRNA in asparagus by high-throughput degradome sequencing analysis.

Organism:: Asparagus officinalis

Type:: Non-coding RNA profiling by high throughput sequencing; Other

Platform:: GPL20875
3 Samples

Download data: XLS

Series

Accession:: GSE72594

ID:: 200072594

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20004922610.

The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome

(Submitter supplied) Plants show a remarkable plasticity to adapt their root architecture to biotic and abiotic constraints of the soil environment. Although some of these modifications are fine-tuned by miRNAs, there are still shadow zones in these regulations. In the model legume Medicago truncatula, we analyzed the small RNA (smRNA) transcriptome of roots submitted to symbiotic and pathogenic interactions. Mapping on the genome and prediction of pre-miRNA hairpins allowed the identification of 416 candidates. more...

Organism:: Medicago truncatula

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL17491
23 Samples

Download data: FA

Series

Accession:: GSE49226

ID:: 200049226

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006661111.

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Oryza sativa

Type:: Other; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13160
28 Samples

Download data: TXT

Series

Accession:: GSE66611

ID:: 200066611

PubMed Full text in PMC Similar studies

Select item 20006661012.

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [degradome]

(Submitter supplied) Elicitor-responsive miRNAs and their targets in rice

Organism:: Oryza sativa

Type:: Other

Platform:: GPL13160
4 Samples

Download data: TXT

Series

Accession:: GSE66610

ID:: 200066610

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006660913.

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [miRNA-Seq]

(Submitter supplied) Elicitor-responsive miRNAs and their targets in rice

Organism:: Oryza sativa

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13160
24 Samples

Download data: TXT

Series

Accession:: GSE66609

ID:: 200066609

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006252114.

High-throughput deep sequencing reveals that microRNAs play important roles in salt adaptation of euhalophyte Salicornia europaea

(Submitter supplied) Backgroud: microRNA (miRNA) is implicated in plant development processes, playing pivotal roles in plant adaptation to environmental stresses. Salicornia europaea, a salt mash euhalophyte, is a good model plant to study salt adaptation mechanisms. It is also attractive in being vegetables, forage and oilseed that can be used for saline land reclamation and biofuel precursor production on marginal lands. more...

Organism:: Salicornia europaea

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL19315
6 Samples

Download data: FA

Series

Accession:: GSE62521

ID:: 200062521

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003884715.

affy_med_2011_09-Analysis of Medicago truncatula root transcriptome in response to mycorrhization by Glomus intraradices under phosphate and nitrogen limitation

(Submitter supplied) affy_med_2011_09: In natural ecosystems most vascular plants develop symbiosis with arbuscular mycorrhizal (AM) fungi which help them acquire nutrients such as phosphorus (P) and nitrogen (N). P has long been known to control AM symbiosis which takes place only when P is limiting. For N, however, its role in controlling mycorrhization is less clear. We have chosen the model plant Medicago truncatula to analyze the impact of P limitation and both P and N limitation on Medicago root transcriptome in response to the AM fungus Rhizophagus irregularis (formerly Glomus intraradices (BEG141)). more...

Organism:: Sinorhizobium meliloti; Medicago sativa; Medicago truncatula

Type:: Expression profiling by array

Platform:: GPL4652
12 Samples

Download data: CEL

Series

Accession:: GSE38847

ID:: 200038847

Select item 20004572616.

microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula

(Submitter supplied) To identify key miRNAs involved in root meristem formation in M. truncatula, deep sequencing was used to compare the miRNA populations dreived from four tissues. These were; root tip tissue, containing the root apical meristem, elongation zone tissue, root forming callus tissue and non-root forming callus tissue. We identified 83 previously reported miRNAs, 24 new to M. truncatula, in 44 families. more...

Organism:: Medicago truncatula

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL15815
4 Samples

Download data: TXT

Series

Accession:: GSE45726

ID:: 200045726

PubMed Similar studies SRA Run Selector

Select item 20006716717.

Medicago truncatula roots treated with symbiotic lipochitooligosaccharides

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Medicago sativa; Medicago truncatula; Sinorhizobium meliloti

Type:: Expression profiling by array

Platform:: GPL4652
114 Samples

Download data: CEL

Series

Accession:: GSE67167

ID:: 200067167

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006716618.

Gene expression response in roots of Medicago truncatula mutants treated with Myc-LCOs

(Submitter supplied) Legumes interact with soil fungi, leading to the development of arbuscular mycorrhizal (AM) roots. Diffusible AM fungal signals were identified as sulphated and non-sulphated LCOs (sMyc-LCOs and nsMyc-LCOs). Applying Myc-LCOs on roots of symbiotic mutants, we used GeneChips to detail the global programme of gene expression in these mutants in response to the external application of Myc-LCOs. Keywords: Expression profiling by array

Organism:: Sinorhizobium meliloti; Medicago sativa; Medicago truncatula

Type:: Expression profiling by array

Platform:: GPL4652
48 Samples

Download data: CEL

Series

Accession:: GSE67166

ID:: 200067166

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006716519.

Gene expression response of Medicago truncatula roots treated with Nod-LCOs

(Submitter supplied) Legumes interact with rhizobia, leading to the development of root nodules. Diffusible rhizobial signals were identified as Nod-LCOs. Applying Nod-LCOs on plantlet roots, we used GeneChips to detail the global programme of gene expression in response to the external application of Nod-LCOs.