GEO DataSets

(Submitter supplied) We report the use of RNA-Seq technique to characterize differences in the global transcritome between multiple genetically similar but phenotypically diverse poultry-associated field strains of S. Enteritidis grown in laboratory media at avian body temperature (42°C).

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

6 Samples

Download data: TXT

(Submitter supplied) Purpose: To elucidated key metabolic pathways important for S. Enteritidis survival in egg white. Methods: RNA sample of Mid-log phase bacteria cultures that grown in M9FeS medium were taken as 0h sample, and bacteria incubated with egg white for 6h 12h and 24h were taken as 6,12,24h RNA sample respectively. Three biological replicates were carried out per sample. RNA sample was sequenced with Illumina HiSeq 2000 System. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

12 Samples

Download data: XLSX

(Submitter supplied) Screen for differences in gene expression between a parental Salmonella enterica serovar Enteritidis strain (ATCC4931) and an adapted strain with increased resistance to the widely used antimicrobial sanitizer dodecyltrimethylammonium chloride (DTAC)

Organism:

Salmonella enterica; Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by array

Platform:

GPL11279

4 Samples

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(Submitter supplied) S. enterica sv Kentucky 3795 and S. enterica sv Enteritidis NalR were grown to mid-log phase in TSB, then subjected to three different acidic conditions generated by two different acids: HCl to pH4.5, HCl to pH5.5 and CH3COOH to pH5.5. After 10min, total RNA was harvested und compared to total RNA harvested from identical control cultures grown in TSB without the pH alteration.

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica; Salmonella enterica subsp. enterica serovar Kentucky

Type:

Expression profiling by array

Platforms:

GPL8183 GPL11279

22 Samples

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(Submitter supplied) Excisable Genomic Islands (EGIs) are horizontally acquired genetic elements that harbor an array of genes with diverse functions. ROD21 is an EGI found integrated in the chromosome of Salmonella enterica serovar Enteritidis (Salmonella ser. Enteritidis). While this island is known to be involved in the capacity of Salmonella ser. Enteritidis to cross the epithelial barrier and colonize sterile organs, the role for most of ROD21 genes remains unknown, and thus identification of their function is fundamental to understand the impact of this EGI on the bacterium pathogenicity. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33504

6 Samples

Download data: XLSX

(Submitter supplied) Transcriptional profiling of Salmonella Enteritidis to egg-white exposure at 45°C for 7 min, 25 min and 45 min

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by array

Platform:

GPL22813

3 Samples

Download data: GPR, XLS