Similar studies for GEO DataSets (Select 200059401) - GEO DataSets

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Items: 20

Select item 2000594011.

Gene expression profiles of rat enamel organs (secretory--stage and maturation stage)

(Submitter supplied) We conducted the genome-wide mRNA expression profiling in parallel with miRNA expression profiling using RNA samples extracted from rat incisor enamel organs, so as to refine the number of predicted gene targets for miRNA regulators.

Organism:: Rattus norvegicus

Type:: Expression profiling by array

Platform:: GPL6101
8 Samples

Download data: TXT

Series

Accession:: GSE59401

ID:: 200059401

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000533842.

miRNA-transcriptome expression pattern during differentiation in human skeletal muscle cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Non-coding RNA profiling by array

Platforms:: GPL15829 GPL11532
44 Samples

Download data: CEL, TXT

Series

Accession:: GSE53384

ID:: 200053384

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000533833.

Dynamic time course miRNA profiling of human skeletal muscle cell differentiation.

(Submitter supplied) The purpose of this study was to determine the miRNA expression profile of in vitro differentiation of human skeletal muscle cells and to couple changes in individual miRNA expression to transcriptional output of target genes. miRNA expression profiling at six different time points during the in vitro differentiation process of human skeletal muscle cells from six subjects. RNA was harvested from myoblasts before induction of differentiation and at every other day for 10 following days.

Organism:: Homo sapiens

Type:: Non-coding RNA profiling by array

Platform:: GPL15829
35 Samples

Download data: TXT

Series

Accession:: GSE53383

ID:: 200053383

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000533824.

Dynamic time course mRNA profiling of human skeletal muscle cell differentiation.

(Submitter supplied) The purpose of this study was to determine the miRNA expression profile of in vitro differentiation of human skeletal muscle cells and to couple changes in individual miRNA expression to effects on target genes by transcriptome profiling of mRNA expression. mRNA expression profiling at three different time points during the in vitro differentiation process of human skeletal muscle cells from three subjects. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL11532
9 Samples

Download data: CEL

Series

Accession:: GSE53382

ID:: 200053382

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Select item 2000831895.

PyMT 4 stages tumor progression microRNA sequencing

(Submitter supplied) We sequenced mammary gland samples of MMTV-PyMT mouse from 4 stages (hyperplasia at week 6, adenoma/MIN at week 8, early carcinoma at week 10, and late carcinoma with lung metastasis at week 12) during tumor progression.

Organism:: Mus musculus

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL17021
24 Samples

Download data: CSV

Series

Accession:: GSE83189

ID:: 200083189

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000597486.

MicroRNA expression in chicken cecum following Salmonella Enteritidis infection

(Submitter supplied) White leghorn layers were infected with Salmonella Enteritidis. The cecum were collected at 7 days post infection for total RNA isolation. The significantly expressed microRNAs between infected and non-infected chickens were identified through Solexa sequencing technology.

Organism:: Gallus gallus

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL16133
6 Samples

Download data: TXT

Series

Accession:: GSE59748

ID:: 200059748

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001078037.

Integrated analysis of miRNA and mRNA expression profiles in 2-, 6- and 12-month-old Small Tail Han Sheep testes to explore the regulation in testis development

(Submitter supplied) The semen of Small Tail Han Sheep has characteristics of high yield, high density, and good motility. To reveal the key miRNAs, mRNAs and miR-Targets regulatory mechanisms in Small Tail Han Sheep testes development, integrated analysis of miRNA and mRNA expression profiles in 2-, 6-, and 12-month-old testes were investigated by RNA-seq technology and bioinformatics methods. As the results shown: 630, 102, and 322 differentially expressed (DE) mRNAs; 5, 1 and 4 DE known miRNAs; 132, 105 and 24 DE novel miRNAs were identified in 2- vs 6-month-old, 6- vs 12-month-old, and 2- vs 12-month-old testes, respectively. more...

Organism:: Ovis aries

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL18884
18 Samples

Download data: TXT

Series

Accession:: GSE107803

ID:: 200107803

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000563688.

miRNA profile of the bovine pretransfer endometrium based on pregnancy success after in vivo and in vitro produced embryos transfer

(Submitter supplied) In summary the main goal of this study is to determine the miRNA transcriptional profile of bovine endoemtrium at early stage of development in relation to pregnancy success after transfer of in vivo and in vitro derived blastocysts

Organism:: Bos taurus; synthetic construct

Type:: Non-coding RNA profiling by array

Platform:: GPL16384
24 Samples

Download data: CEL

Series

Accession:: GSE56368

ID:: 200056368

Select item 2000400499.

Deregulated microRNAs in triple-negative breast cancer revealed by deep sequencing

(Submitter supplied) Twenty-four triple-negative breast cancer and 14 adjacent normal tissues were collected from breast cancer patients during surgeries at National Taiwan University Hospital (NTUH, Taipei, Taiwan). All triple-negative breast cancer samples were invasive ductal carcinomas (IDC) and were negative in immunohistochemical statuses of ER, PR, and HER2 receptors, as confirmed by professional pathologists. Treatment procedure of all patients followed the National Comprehensive Cancer Network (NCCN) guideline. more...

Organism:: Homo sapiens

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13393
38 Samples

Download data: TXT

Series

Accession:: GSE40049

ID:: 200040049

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20004185910.

miRNA-mRNA networks in mouse testis during the 1st wave of spermatogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Non-coding RNA profiling by array; Expression profiling by array

Platforms:: GPL6246 GPL16219
15 Samples

Download data: CEL, TXT

Series

Accession:: GSE41859

ID:: 200041859

Select item 20004185811.

Microarray profiling of total testicular transcriptome in mouse

(Submitter supplied) Gene expression during spermatogenesis is highly variable and this differential pattern is very important for the successive culmination of different stages of the process, leading to production of the male gamete. Taking the time window of first wave of spermatogenesis, we did a microarray profiling of total testicular transcriptome in mouse and found several significant patterns of variable gene expression, forming upregulated and downregulated clusters among the three stages analyzed here.

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL6246
9 Samples

Download data: CEL

Series

Accession:: GSE41858

ID:: 200041858

Select item 20004185712.

Microarray profiling of total testicular microRNAs in mouse

(Submitter supplied) Gene expression in mammalian testis undergoing spermatogenesis is under strict post transcriptional regulation and microRNAs are known to play a role in this regulation. Considering the time window of first wave of spermatogenesis, we did a microarray profiling of total testicular microRNAs in mouse and found several significant patterns of variable expression of these molecules during the different stages analyzed here.

Organism:: Mus musculus

Type:: Non-coding RNA profiling by array

Platform:: GPL16219
6 Samples

Download data: TXT

Series

Accession:: GSE41857

ID:: 200041857

Select item 20006705613.

microRNA expression profiles of distinct human and mouse mammary epithelial cell types

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens; Mus musculus; Rattus norvegicus

Type:: Expression profiling by RT-PCR

Platforms:: GPL18234 GPL10331
32 Samples

Download data

Series

Accession:: GSE67056

ID:: 200067056

PubMed Full text in PMC Similar studies

Select item 20006705514.

microRNA expression profiles of distinct mouse mammary epithelial cell types

(Submitter supplied) RNA samples were prepared from freshly sorted mammary cell subpopulations (MaSC/basal-enriched, luminal progenitor, mature luminal and stromal) from five sets of adult mice. High throughput RT-PCR was used to measure the global microRNA expression profiles of each cell subpopulation. The expression profiles were compared between cell subpopulations to gain insight into the regulation of lineage-restricted genes.

Organism:: Rattus norvegicus; Mus musculus

Type:: Expression profiling by RT-PCR

Platform:: GPL10331
14 Samples

Download data: XLS

Series

Accession:: GSE67055

ID:: 200067055

PubMed Full text in PMC Similar studies

Select item 20006705415.

microRNA expression profiles of distinct human mammary epithelial cell types

(Submitter supplied) RNA samples were prepared from freshly sorted mammary cell subpopulations (MaSC/basal-enriched, luminal progenitor, mature luminal and stromal) from five human donors. High throughput RT-PCR was used to measure the global microRNA expression profiles of each cell subpopulation. The expression profiles were compared between cell subpopulations to gain insight into the regulation of lineage-restricted genes.

Organism:: Homo sapiens

Type:: Expression profiling by RT-PCR

Platform:: GPL18234
18 Samples

Download data: XLS

Series

Accession:: GSE67054

ID:: 200067054

PubMed Full text in PMC Similar studies

Select item 20000944016.

Expression data from human embryonic stem cell differentiation

(Submitter supplied) MicroRNAs (miRNAs) are noncoding RNAs of approximately 22 nucleotides in length that usually suppress the translation of target messenger RNAs (mRNAs) through partial complementarity to the 3¡¦ untranslated region (3¡¦ UTR) of protein-coding mRNAs in animals. However, there is increasing evidence that miRNAs can also reduce the steady-state levels of their target mRNAs in animals. In this investigation, both miRNA and mRNA profiles from the undifferentiated human embryonic stem cell line hES-T3 (T3ES), hES-T3 derived embryoid bodies (T3EB) and hES-T3 differentiated fibroblast-like cells (T3DF) were quantitatively determined. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL570
8 Samples

Download data: CEL

Series

Accession:: GSE9440

ID:: 200009440

Select item 20003897417.

Gene expression networks in COPD: microRNA and mRNA regulation

(Submitter supplied) 70 miRNAs and 2667 mRNAs were differentially expressed between lung tissue from subjects with COPD and smokers without COPD. miRNA and mRNA expression profiles enriched for biological pathways that may be relevant to the pathogenesis of COPD including the transforming growth factor b, Wnt and focal adhesion pathways. miR-223 and miR-1274a were the most affected miRNAs in subjects with COPD compared with smokers without obstruction. more...

Organism:: Mus musculus; Human gammaherpesvirus 8; Homo sapiens; Human betaherpesvirus 5; Murid betaherpesvirus 1; Human immunodeficiency virus 1; Rattus norvegicus; JC polyomavirus; Murid gammaherpesvirus 4; Betapolyomavirus hominis; Human alphaherpesvirus 1; human gammaherpesvirus 4; Betapolyomavirus macacae

Type:: Expression profiling by array; Non-coding RNA profiling by array

Platforms:: GPL7723 GPL4133
59 Samples

Download data

Series

Accession:: GSE38974

ID:: 200038974

Select item 20007160818.

MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

(Submitter supplied) Background: Dwarf cottons are more resistant to damage from wind and rain and associated with stable, increased yields, and also desirable source for breeding the machine harvest varieties. In an effort to uncover the transcripts and miRNA networks involved in plant height, the transcriptome and small RNA sequencing were performed based on dwarf mutant Ari1327 (A1), tall-culm mutant Ari3697 (A3) and wild type Ari971 (A9) in Gossypium hirsutum. more...

Organism:: Gossypium hirsutum

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL16485
6 Samples

Download data: FA, TXT

Series

Accession:: GSE71608

ID:: 200071608

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006086119.

An integrative analysis of renal miRNA- and mRNA-expression signatures in progressive chronic kidney disease

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Non-coding RNA profiling by array

Platform:: GPL13497
72 Samples

Download data: TXT

Series

Accession:: GSE60861

ID:: 200060861

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006086020.

An integrative analysis of renal miRNA- and mRNA-expression signatures in progressive chronic kidney disease [validation cohort]

(Submitter supplied) MicroRNAs (miRNAs) contribute to chronic kidney disease progression via negatively regulating mRNA abundance. However, their association with clinical outcome remains poorly understood. We performed large-scale miRNA and mRNA expression profiling on cryo-cut renal biopsy sections from a discovery (n=43) and a validation (n=29) cohort. In the discovery cohort (GEO Series accession number GSE45980), miRNAs differentiating stable and progressive cases were determined, and putative target mRNAs showing inversely correlated expression profiles were identified. more...

Organism:: Homo sapiens

Type:: Expression profiling by array; Non-coding RNA profiling by array

Platform:: GPL13497
29 Samples

Download data: TXT

Series

Accession:: GSE60860

ID:: 200060860

PubMed Full text in PMC Similar studies Analyze with GEO2R

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