Similar studies for GEO DataSets (Select 200098388) - GEO DataSets

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Items: 13

Select item 2000983881.

Next Generation Sequencing measuring Nod-like receptors mRNA expression in intestinal epithelial cells

(Submitter supplied) Intestinal epithelisal cells were obtained by EDTA isolation of ileum from WT mice followed by facs sorting (EpCAM + CD45 – 7AAD – ). Raw sequencing reads were aligned to the mouse genome (mm10) with Tophat , and gene expression levels were measured by Cufflinks .

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13112
2 Samples

Download data: XLSX

Series

Accession:: GSE98388

ID:: 200098388

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001023922.

Transcriptome analysis of human airway epithelium infected by Human Bocavirus 1

(Submitter supplied) Human Bocavirus 1(HBoV1), which belongs to the genus Bocaparvovirus of the family Parvoviridae, infects well differentiated human airway epithelium which is at mitotically quiescent state. To systematicaly investigate the interaction between HBoV1 and primary human airway epithelium cultured at an air-liquid interface (HAE-ALI), RNA-seq was applied to study the transcriptome profile of HAE-ALI infected by HBoV1.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16791
6 Samples

Download data: TXT

Series

Accession:: GSE102392

ID:: 200102392

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 2001209283.

Global gene expression analysis in Naive vs. ASC KO murine CD4 T cells post-activation

(Submitter supplied) Naïve CD62L+ CD44- CD25- CD4+ splenic mouse T cells from WT or ASC KO cells were left untreated or treated with Anti-CD3/28 antobodies for 12hr

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13112
5 Samples

Download data: TXT

Series

Accession:: GSE120928

ID:: 200120928

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Select item 2000355974.

Microbiota-dependent gene expression in small intestinal epithelial cells (IECs)

(Submitter supplied) Intestinal epithelial cells were isolated from total small intestine of each four 28-day old conventionally raised (conv) and germ-free (GF) bred C57BL/6 mice (protocol according to: Lotz et al., J. Exp Med. 2006). Total RNA was isolated by TriZol and ist purity was examined using a Bioanalyszer. We used microarrays to comparatively detail the global gene expression in primary total isolated intestinal epithelial cells.

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL4134
4 Samples

Download data: TXT

Series

Accession:: GSE35597

ID:: 200035597

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Select item 2000355965.

Age-dependent gene expression in isolated small intestinal epithelial cells (IECs)

(Submitter supplied) Intestinal epithelial cells were isolated from total small intestine of each four 3- and 21-day-old C57BL/6 mice (protocol according to: Lotz et al., J. Exp. Med. 2006). Each two 3- and 21-day-old animals were obtained from one litter. Total RNA was isolated by TriZol and ist purity was examined using a Bioanalyszer. We used microarrays to detail the global gene expression in primary total isolated intestinal epithelial cells of 3- versus 21-day-old mice.

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL4134
4 Samples

Download data: TXT

Series

Accession:: GSE35596

ID:: 200035596

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Select item 2001664006.

Rotavirus susceptibility of antibiotic-treated mice ascribed to diminished expression of IL-22

(Submitter supplied) We wanted to identify effector molecules which confer rotavirus resistance in microbiota-depleted mice We used microarrays to analyze the global programme of gene expression in response to IL22 treatment in the ileum of antibiotic-treated Ifnlr1-/- mice

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL6887
10 Samples

Download data: TXT

Series

Accession:: GSE166400

ID:: 200166400

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Select item 2001691977.

Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

(Submitter supplied) To understand the impact of murine rotavirus infection on mouse intestinal epithelial tissue, we isolated total intestinal epithelium from uninfected and infected C57Bl6J mice and performed single-cell RNAseq.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
6 Samples

Download data: MTX, TSV

Series

Accession:: GSE169197

ID:: 200169197

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Select item 2001687738.

Murine rotavirus infects and replicates in intestinal tuft cells

(Submitter supplied) RNAseq of coding and noncoding RNA isolated from intestinal tuft cells reveals murine rotavirus replication in intestinal tuft cells.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
6 Samples

Download data: CSV

Series

Accession:: GSE168773

ID:: 200168773

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Select item 2002522029.

The difference between intraepithelial mast cells and lamina propria mast cells (ATAC-seq)

(Submitter supplied) Type 2 immune responses are crucial for protection against helminth infections and for the maintenance of tissue homeostasis, yet the underlying mechanisms of immune activation remain incompletely understood. Here, we study the role of mast cells in type 2 immunity. While the number of lamina propria residing mast cells (termed LPMCs hereinafter) remained stable, intraepithelial mast cells (termed IEMCs hereinafter) markedly expanded during the course of type 2 responses. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24247
2 Samples

Download data: BW

Series

Accession:: GSE252202

ID:: 200252202

PubMed Similar studies

Select item 20023441410.

The difference between intraepithelial mast cells and lamina propria mast cells

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23479
4 Samples

Download data: TXT

Series

Accession:: GSE234414

ID:: 200234414

PubMed Similar studies

Select item 20023579611.

KAT2A and KAT2B prevent double-stranded RNA accumulation and interferon signaling to maintain intestinal stem cell renewal

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL21103 GPL28457
20 Samples

Download data: BW, TXT

Series

Accession:: GSE235796

ID:: 200235796

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Select item 20023579412.

Enrichment of dsRNA in primary intestinal epithelium cells with Kat2a/Kat2b DKO.

(Submitter supplied) dsRIP-seq was conducted to determine differential enrichment of dsRNA in whole intestinal epithelial cells between Kat2a/Kat2b DKO and controls.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21103
12 Samples

Download data: BW, TXT, XLSX

Series

Accession:: GSE235794

ID:: 200235794

PubMed Full text in PMC Similar studies

Select item 20023578913.

Transcriptomic changes in primary intestinal epithelium cells with Kat2a/Kat2b DKO.

(Submitter supplied) RNA-seq was conducted to determine differentially expressed genes in whole intestinal epithelial cells between Kat2a/Kat2b DKO and controls.