GEO DataSets

(Submitter supplied) To identify genes express in earliest stage of fruiting body initiation in Coprinopsis cinerea, strain #326 (AmutBmut haploid fruiting strain), genes expressed at 0, 0.5, 1, 3h after light exposure were compared by Super-SAGE Approximately, 1 million tags were sequenced from each mycelial sample to obtain 65,535 unique tags. First, we made matches between the tags and predicted genes of the WT strain, and 24.4% tags matched to predicted genes. more...

Organism:

Coprinopsis cinerea

Type:

Expression profiling by SAGE

Platform:

GPL23540

4 Samples

Download data

(Submitter supplied) Large scale assessment of the transcriptomes of the vegetative mycelium and primordium will facilitate the generation of a more comprehensive picture of the fruiting process in basidiomycetes. We coupled 5'-Serial Analysis of Gene Expression (5'-SAGE) to high-throughput pyrosequencing from 454 Life Sciences to analyze the transcriptomes and identify up-regulated genes (URGs) among vegetative mycelium (Myc) and stage 1 primordium (S1-Pri) of Coprinopsis cinerea during fruiting body development. more...

Organism:

Coprinopsis cinerea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16031

2 Samples

Download data: TXT

(Submitter supplied) Mating compatibility in C. cinerea is controlled by two loci, A and B. Following fusion of undifferentiated hyphal cells, a complex program is initiated which results in the maintenance of one nucleus from each parent in every cell (the dikaryon). We identified downstream targets of the A locus (A on), the B locus (B on), and both loci (Aon Bon) using strains in which the two pathways are activated separately, and a dikaryotic strain. more...

Organism:

Coprinopsis cinerea

Type:

Expression profiling by array

Platform:

GPL7697

12 Samples

Download data: GPR

(Submitter supplied) Chinese cordyceps is of particular interest for its confined distribution, mysterious lifecycle, ecological importance and developmental biology. The large scale artificial cultivation of this fungus has been succeeded in China until recently but with low efficiency and high cost being ascribed to too much unsolved biological issues, such as gene expression during development and the sexuality reproduction. more...

Organism:

Ophiocordyceps sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25863

18 Samples

Download data: XLS

(Submitter supplied) The genome of V. volvacea revealed 47 genes encoding homeobox transcription factors. Of them, 8 differentially expressed homeobox transcription factors were obtained by comparing the gene expression during primordia and elongation formation. Furthermore, quantitative real-time PCR was performed on selected genes with different expression levels to demonstrate the utility of digital gene expression for gene expression profiles during fruiting body formation. more...

Organism:

Volvariella volvacea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16412

5 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rickenella mellea; Phanerodontia chrysosporium; Schizophyllum commune; Lentinus tigrinus; Coprinopsis cinerea

Type:

Expression profiling by high throughput sequencing

5 related Platforms

92 Samples

Download data: CSV

(Submitter supplied) The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. more...

Organism:

Phanerodontia chrysosporium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25555

8 Samples

Download data: CSV

(Submitter supplied) The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. more...

Organism:

Schizophyllum commune

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26056

14 Samples

Download data: CSV

(Submitter supplied) The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. more...

Organism:

Rickenella mellea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26055

14 Samples

Download data: CSV

(Submitter supplied) The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. more...

Organism:

Lentinus tigrinus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26054

27 Samples

Download data: CSV

(Submitter supplied) The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. more...

Organism:

Coprinopsis cinerea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26053

29 Samples

Download data: CSV

(Submitter supplied) Sclerotial formation is one of the most important phases during the morel life cycle, and previous reports indicated that reactive oxygen species (ROS) play an important role in sclerotial formation. However, the mechanisms of ROS response in sclerotial initiation (SI) stage are poorly understood.

Organism:

Morchella importuna

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28806

4 Samples

Download data: XLSX