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Links from GEO DataSets

Items: 20

1.

RNA-seq from Harpegnathos tissues and brain regions

(Submitter supplied) Transcriptome sequencing of Harpegnathos ovary, fat body, antenna, non-visual brain, optic lobe, and retina
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
18 Samples
Download data: RPKM
Series
Accession:
GSE112843
ID:
200112843
2.

Harpegnathos saltator RNA-seq and Iso-Seq

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL30014 GPL22089
28 Samples
Download data: FASTA, GTF
Series
Accession:
GSE172309
ID:
200172309
3.

Transcriptome Iso-Seq from Harpegnathos

(Submitter supplied) RNA from brain and fat body/ovary (combined) was sequenced to use in Harpegnathos annotation improvement.
Organism:
Harpegnathos saltator
Type:
Other
Platform:
GPL30014
2 Samples
Download data
Series
Accession:
GSE172308
ID:
200172308
4.

RNA-seq from Harpegnathos worker brains

(Submitter supplied) This RNA-seq was done separate from any annotation and used to calculate the % of reads mapping to features.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
26 Samples
Download data: TXT
Series
Accession:
GSE172307
ID:
200172307
5.

Social reprogramming in ants induces longevity-associated glia remodeling

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Drosophila melanogaster; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL19132 GPL22089
49 Samples
Download data
Series
Accession:
GSE149668
ID:
200149668
6.

Single-cell RNA sequencing of Harpegnathos saltator brains

(Submitter supplied) We used 10x Genomics and Drop-seq single-cell RNA-seq to identify the cell type composition of the Harpegnathos brain and study how it changes during the process of adult caste transition (from worker to pseudo-queen), aging, and brain injury.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
42 Samples
Download data: TXT
Series
Accession:
GSE135513
ID:
200135513
7.

RNA-seq from Camponotus and Harpegnathos ants for genome annotation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22089 GPL20286
47 Samples
Download data
Series
Accession:
GSE102605
ID:
200102605
8.

Whole body RNA-seq from developmental stages of Harpegnathos ants

(Submitter supplied) RNA from Harpegnathos embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae, adult workers, and males was sequenced to look for gene expression changes throughout development.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
14 Samples
Download data: RPKM
Series
Accession:
GSE102604
ID:
200102604
9.

Whole body RNA-seq from developmental stages of Camponotus ants

(Submitter supplied) RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20286
15 Samples
Download data: RPKM
Series
Accession:
GSE102603
ID:
200102603
10.

Caste-specific gene expression in ants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camponotus floridanus; Monomorium pharaonis; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
4 related Platforms
152 Samples
Download data
Series
Accession:
GSE83807
ID:
200083807
11.

Brain RNA-seq 120 days after worker-gamergate transitions in Harpegnathos ants

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and 120 days later mRNA from their brains was sequenced to determine changes in gene expressioin
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
47 Samples
Download data: TXT, XLSX
Series
Accession:
GSE83798
ID:
200083798
12.

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
4 related Platforms
47 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE31577
ID:
200031577
13.

Single base resolution methylome of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep BS-Seq of two Ants: Camponotus floridanus and Harpegnathos saltator.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing
4 related Platforms
39 Samples
Download data: TXT
Series
Accession:
GSE31576
ID:
200031576
14.

Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL14137 GPL14138
4 Samples
Download data: BEDGRAPH
Series
Accession:
GSE31346
ID:
200031346
15.

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL14138 GPL14137
4 Samples
Download data: FA
Series
Accession:
GSE31344
ID:
200031344
16.

High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
20 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE22680
ID:
200022680
17.

Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10644 GPL10645
10 Samples
Download data: FA
Series
Accession:
GSE22679
ID:
200022679
18.

Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
10 Samples
Download data: BEDGRAPH
Series
Accession:
GSE22678
ID:
200022678
19.

Bulk RNA-seq data to assess an improved zebrafish transcriptome annotation

(Submitter supplied) oligo-dT and random primed RNA-seq libraries were used to test an improved annotation of the zebrafish transcriptome
Organism:
Danio rerio
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14875
12 Samples
Download data: CSV
Series
Accession:
GSE152759
ID:
200152759
20.

Brain RNA-seq one day after knockdown of the corazonin receptor in Harpegnathos ants

(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of knockding down the corazonin receptor in the ant brain.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
36 Samples
Download data: TXT
Series
Accession:
GSE99130
ID:
200099130
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