Similar studies for GEO DataSets (Select 200129824) - GEO DataSets

Select item 2001298241.

ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Canis lupus familiaris

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL21400 GPL20988
36 Samples

Download data: BW, TXT

Series

Accession:: GSE129824

ID:: 200129824

PubMed Full text in PMC Similar studies

Select item 2001298232.

RNA-seq for MDCKII 3D and 2D epithelial morphogenesis.

(Submitter supplied) We performed time-course RNA-seq experiments for MDCKII 3D cell culture, and included seeding day0 cells and over-confluent 2D cells. To study how intracellular trafficking affects transcriptome changes, we also profiled trancriptome of DENND5A and AVL9 KD MDCKII cells by RNA-seq.

Organism:: Canis lupus familiaris

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL21400 GPL20988
29 Samples

Download data: TXT

Series

Accession:: GSE129823

ID:: 200129823

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001298223.

ATAC-seq for MDCKII 3D and 2D epithelial morphogenesis

(Submitter supplied) We performed ATAC-seq experiments for MDCKII 3D cells, confluent 2D cells as well as seeding day0 cells to study if transcriptome changes during epithelial morphogenesis is associated with chromatin changes.

Organism:: Canis lupus familiaris

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL21400
7 Samples

Download data: BW

Series

Accession:: GSE129822

ID:: 200129822

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001060854.

HNF1B controls epithelial organization and cell polarity during ureteric bud branching and collecting duct morphogenesis

(Submitter supplied) Kidney development depends critically on proper ureteric bud branching giving rise to the entire collecting duct system. The transcription factor HNF1B is required for the early steps of ureteric bud branching. Yet, the molecular and cellular events regulated by HNF1B are poorly understood. We report that specific removal of Hnf1b from the ureteric bud leads to defective cell-cell contacts and apico-basal polarity during the early branching events. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18635
4 Samples

Download data: TXT

Series

Accession:: GSE106085

ID:: 200106085

PubMed Similar studies SRA Run Selector

Select item 2001020865.

Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin

(Submitter supplied) Skin and its appendages such as hair follicle and sweat gland are formed by Keratin-5 expressing (Krt5+) epidermal cells that are specified from primitive, Keratin-8 expressing (Krt8+) ectodermal progenitors shortly after gastrulation. Here we show that transcription factor ∆Np63 is required for converting Krt8+ ectodermal progenitors to Krt5+ epidermal progenitors and priming the underlying dermal cells to form dermal condensate by activating the Wnt/ß-Catenin pathway. more...