Similar studies for GEO DataSets (Select 200149668) - GEO DataSets

(Submitter supplied) We used 10x Genomics and Drop-seq single-cell RNA-seq to identify the cell type composition of the Harpegnathos brain and study how it changes during the process of adult caste transition (from worker to pseudo-queen), aging, and brain injury.

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
42 Samples

Download data: TXT

Series

Accession:: GSE135513

ID:: 200135513

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001128437.

RNA-seq from Harpegnathos tissues and brain regions

(Submitter supplied) Transcriptome sequencing of Harpegnathos ovary, fat body, antenna, non-visual brain, optic lobe, and retina

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
18 Samples

Download data: RPKM

Series

Accession:: GSE112843

ID:: 200112843

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001026058.

RNA-seq from Camponotus and Harpegnathos ants for genome annotation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Harpegnathos saltator; Camponotus floridanus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL22089 GPL20286
47 Samples

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Series

Accession:: GSE102605

ID:: 200102605

PubMed Full text in PMC Similar studies

Select item 2000838079.

Caste-specific gene expression in ants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Harpegnathos saltator; Monomorium pharaonis; Camponotus floridanus

Type:: Expression profiling by high throughput sequencing

4 related Platforms
152 Samples

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Series

Accession:: GSE83807

ID:: 200083807

PubMed Full text in PMC Similar studies

Select item 20008379810.

Brain RNA-seq 120 days after worker-gamergate transitions in Harpegnathos ants

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and 120 days later mRNA from their brains was sequenced to determine changes in gene expressioin

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
47 Samples

Download data: TXT, XLSX

Series

Accession:: GSE83798

ID:: 200083798

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20010260411.

Whole body RNA-seq from developmental stages of Harpegnathos ants

(Submitter supplied) RNA from Harpegnathos embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae, adult workers, and males was sequenced to look for gene expression changes throughout development.

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
14 Samples

Download data: RPKM

Series

Accession:: GSE102604

ID:: 200102604

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20010260312.

Whole body RNA-seq from developmental stages of Camponotus ants

(Submitter supplied) RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.

Organism:: Camponotus floridanus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20286
15 Samples

Download data: RPKM

Series

Accession:: GSE102603

ID:: 200102603

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20015275913.

Bulk RNA-seq data to assess an improved zebrafish transcriptome annotation

(Submitter supplied) oligo-dT and random primed RNA-seq libraries were used to test an improved annotation of the zebrafish transcriptome

Organism:: Danio rerio

Type:: Expression profiling by high throughput sequencing

Platform:: GPL14875
12 Samples

Download data: CSV

Series

Accession:: GSE152759

ID:: 200152759

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003157714.

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Harpegnathos saltator; Camponotus floridanus

Type:: Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing

4 related Platforms
47 Samples

Download data: BEDGRAPH, FA

Series

Accession:: GSE31577

ID:: 200031577

PubMed Full text in PMC Similar studies

Select item 20003157615.

Single base resolution methylome of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep BS-Seq of two Ants: Camponotus floridanus and Harpegnathos saltator.

Organism:: Camponotus floridanus; Harpegnathos saltator

Type:: Methylation profiling by high throughput sequencing

4 related Platforms
39 Samples

Download data: TXT

Series

Accession:: GSE31576

ID:: 200031576

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003134616.

Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:: Harpegnathos saltator; Camponotus floridanus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL14137 GPL14138
4 Samples

Download data: BEDGRAPH

Series

Accession:: GSE31346

ID:: 200031346

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003134417.

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:: Harpegnathos saltator; Camponotus floridanus

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL14138 GPL14137
4 Samples

Download data: FA

Series

Accession:: GSE31344

ID:: 200031344

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20009913018.

Brain RNA-seq one day after knockdown of the corazonin receptor in Harpegnathos ants

(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of knockding down the corazonin receptor in the ant brain.

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
36 Samples

Download data: TXT

Series

Accession:: GSE99130

ID:: 200099130

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20008380619.

Brain RNA-seq one day intra-head injection of corazonin or control peptide in Harpegnathos ants.

(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of corazonin in the brain.

Organism:: Harpegnathos saltator

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22089
23 Samples

Download data: TXT, XLSX

Series

Accession:: GSE83806

ID:: 200083806

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20008380420.

Brain RNA-seq during the worker-gamergate transitions in Harpegnathos ants

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and mRNA from their brains was sequenced to determine changes in gene expression at different time points (0, 6, 13, and 110 days after transition onset)