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Links from GEO DataSets

Items: 20

1.

Next Generation Sequencing Facilitates Quantitative Analysis of NC and shMETTL14 Transcriptomes

(Submitter supplied) The goals of this study are to compare the differentially expressed genes between NC and shMETTL14 groups
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20795
4 Samples
Download data: TXT
2.

MeRIP sequencing of human osteosarcoma cells

(Submitter supplied) The goals of this study are to compare the differential m6A peaks between NC and shMETTL14 groups
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL20795
8 Samples
Download data: TXT
3.

Transcriptome analysis after METTL14 overexpression in ocular melanoma cells

(Submitter supplied) In order to study the mechanism of METTL14 and the development of ocular melanoma, we established a model of overexpression of METTL14 in ocular melanoma. The results showed that the expression of FAT4 was increased after METTL14 overexpression. In order to reveal the interaction between METTL14 and FAT4 and to further explore the relationship between the expression level of METTL14 and the survival time of ocular melanoma patients provides new ideas for the treatment of malignant tumors.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24676
6 Samples
Download data: TXT
Series
Accession:
GSE215095
ID:
200215095
4.

Histone acetylation modification analysis in uveal melanoma cells and normal melanocytes

(Submitter supplied) In order to study the histone modification differences in uveal melanoma cells and normal melanocytes.
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL24676
6 Samples
Download data: BW, NARROWPEAK
Series
Accession:
GSE214464
ID:
200214464
5.

Transcriptome analysis after treating with LBH589 in ocular melanoma cells

(Submitter supplied) In order to study the mechanism of histone acetylation affecting development of ocular melanoma, we treated ocular melanoma cells with histone deacetylatase inhibitor LBH589. The results showed that the METTL14 was increased after LBH589 treatment. The study aims to reveal the interaction between histone acetylation and m6A modification, and to further explore the relationship between the expression level of METTL14 and the survival time of ocular melanoma patients, hopefully providing new ideas for the treatment of malignant tumors.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24676
6 Samples
Download data: TXT
Series
Accession:
GSE214457
ID:
200214457
6.

Global N6-methyladenosine RNA profiling reveals CSF1R as a target of METTL14 in non-small cell lung cancer.

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing; Other
Platform:
GPL21290
18 Samples
Download data: BW, TXT
Series
Accession:
GSE179659
ID:
200179659
7.

Global N6-methyladenosine RNA profiling reveals CSF1R as a target of METTL14 in non-small cell lung cancer [RIP-seq]

(Submitter supplied) Non-small cell lung cancer (NSCLC) is a common type of lung cancer, characterized by a poor prognosis. N6-methyladenosine (m6A) emerges as one of the most important modification of RNA, and m6A modifier METTL14 were reported to play pivotal role in multiple cancer types. However, there are limited number of studies of METTL14 in lung cancer and there still lacks systematic investigation of the function, clinical significance and targets of METTL14 in NSCLC. more...
Organism:
Homo sapiens
Type:
Other
Platform:
GPL21290
2 Samples
Download data: BW, TXT
8.

Global N6-methyladenosine RNA profiling reveals CSF1R as a target of METTL14 in non-small cell lung cancer [meRIP-seq]

(Submitter supplied) Non-small cell lung cancer (NSCLC) is a common type of lung cancer, characterized by a poor prognosis. N6-methyladenosine (m6A) emerges as one of the most important modification of RNA, and m6A modifier METTL14 were reported to play pivotal role in multiple cancer types. However, there are limited number of studies of METTL14 in lung cancer and there still lacks systematic investigation of the function, clinical significance and targets of METTL14 in NSCLC. more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL21290
16 Samples
Download data: BW, TXT
9.

MeRIP-seq of K1 PTC cells

(Submitter supplied) Exploring the target genes of m6A modification downstream of FTO that play a regulatory role in glycolytic metabolism of PTC.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL20301
12 Samples
Download data: XLSX
10.

Attenuation of IFN signaling due to M6A modification of the host epitranscriptome promotes EBV lytic reactivation

(Submitter supplied) N6-methyladenosine (m6A) modification is one of the most abundant post-transcriptional modifications that plays an important role in many pathophysiological conditions including host-pathogen interactions. A number of viruses were previously shown to manipulate the cellular m6A machinery usurping its function to their benefit during the course of their life cycle. Previously, we reported that EBV reprograms the host m6A system to regulate the stability of the viral transcripts and drive viral-mediated tumorigenesis by hijacking the functions of methyltransferase METTL14. more...
Organism:
Homo sapiens
Type:
Other
Platform:
GPL16791
16 Samples
Download data: NARROWPEAK, TXT
Series
Accession:
GSE210618
ID:
200210618
11.

RNA Methyltransferase METTL14 Promotes Breast Cancer Growth and Progression

(Submitter supplied) We investigated the role of RNA N6-adenosine methyltransferase protein METTL14 that supports breast cancer growth and progression, and we showed METTL14 knockdown inhibited long-term survival, migration as well as invasion of breast cancer cells.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL11154
4 Samples
Download data: TXT
12.

Analysis of gene expression, motif and pattern of m6A modified region and m6A enrichment level in Ocular melanoma and Melanocyte cell lines. Gene expressin analysis of METTL3 knock down in PIG1, ALKBH5 knock down and HINT2 over expression in OCM1.

(Submitter supplied) Dynamic N6-methyladenosine (m6A) RNA modification installed and erased by N6-methyltransferases and demethylases regulates gene expression, alternative splicing and cell fate. Ocular melanoma, comprising uveal melanoma (UM) and conjunctival melanoma (CM), is the most common primary eye tumor in adults and the 2nd most common melanoma. However, the functional role of m6A modification in ocular melanoma remains unclear. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL20301 GPL20795
42 Samples
Download data: XLS, XLSX
13.

Transcriptomic profiling of mouse neural stem cells after hypoxia/reoxygenation

(Submitter supplied) Ischemia-reperfusion injury to the central nervous system (CNS) often causes severe complications. Hypoxia/reoxygenation (H/R) is one of the most common and detrimental internal environmental changes experienced by local cells and is often used to simulate the process of ischemia-reperfusion in vitro. The activation of endogenous neural stem cells (NSCs) is considered a promising therapeutic strategy for nerve repair after injury. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24247
6 Samples
Download data: TXT
Series
Accession:
GSE221842
ID:
200221842
14.

Comprehensive analysis of the transcriptome-wide m6A methylation in mouse neural stem cells after hypoxia/reoxygenation

(Submitter supplied) Ischemia-reperfusion injury to the central nervous system (CNS) often causes severe complications. Hypoxia/reoxygenation (H/R) is one of the most common and detrimental internal environmental changes experienced by local cells and is often used to simulate the process of ischemia-reperfusion in vitro. The activation of endogenous neural stem cells (NSCs) is considered a promising therapeutic strategy for nerve repair after injury. more...
Organism:
Mus musculus
Type:
Other
Platform:
GPL24247
12 Samples
Download data: TXT
Series
Accession:
GSE221841
ID:
200221841
15.

Alteration of N6-Methyladenosine mRNAMethylation in an hiPSC-CMs Model of TKI-induced cardiotoxicity

(Submitter supplied) We performed a genome-wide analysis of m6A mRNA methylation in SUN-treated human pluripotent stem cells induced myocardial cells (hiPSC-CMs) by methylated RNA immunoprecipitation sequencing (MeRIP-seq).
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL24676
12 Samples
Download data: TXT, XLS
Series
Accession:
GSE192913
ID:
200192913
16.

N6-methyladenosine methyltransferase METTL14-mediated autophagy in malignant development of oral squamous cell carcinoma

(Submitter supplied) N6-methyladenosine (m6A) is the most abundant internal mRNA modification in eukaryotes and is related to stability, localization, or translation efficiency in tumorigenesis. Autophagy plays an important role in the occurrence and development of tumours. However, the relationship between m6A and autophagy remains unclear. In this study, we used a rapamycin-induced autophagy model of oral squamous cell carcinoma (OSCC) cells, and observed increased m6A RNA methylation. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL24676
12 Samples
Download data: TXT, XLS
17.

METTL14 facilitates global genome repair and suppresses skin tumorigenesis

(Submitter supplied) Global genome repair (GGR), a subpathway of nucleotide excision repair (NER), corrects bulky helix-distorting DNA lesions across the whole genome, and is essential for preventing mutagenesis and skin cancer. Here we show that METTL14 (methyltransferase-like 14), a critical component of the m6A RNA methyltransferase complex, promotes GGR through regulating m6A mRNA methylation-mediated DDB2 translation and suppresses UV-induced skin tumorigenesis. more...
Organism:
Homo sapiens
Type:
Other
Platform:
GPL11154
12 Samples
Download data: BW
18.

A longitudinal m6A epi-transcriptome profile during porcine development of prenatal skeletal muscles

(Submitter supplied) By comparative epigenomics, our study has revealed the critical role of m6A in prenatal skeletal muscle development.
Organism:
Sus scrofa
Type:
Other
Platform:
GPL19176
44 Samples
Download data: TXT
Series
Accession:
GSE141943
ID:
200141943
19.

METTL3 promotes carcinogenesis in colorectal cancer

(Submitter supplied) To elucidate whether METTL3 plays a role in colorectal cancer tumorigenesis, a RNA-seq analysis was performed to compare the gene expression profiles of METTL3-KO and wild-type HCT116 cells.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21290
6 Samples
Download data: TXT
20.

Long noncoding RNA lnc-H2AFV-1 promotes cell growth by regulating aberrant N6-methyladenosine RNA modification in head and neck squamous cell carcinoma

(Submitter supplied) Head and neck squamous cell carcinoma (HNSCC) is the most common malignant tumor in the oral and maxillofacial regions, and long noncoding RNAs (lncRNAs) play crucial roles in the occurrence and progression of HNSCC. in our study, quantified m6A RNA methylation and dot blot assays revealed that total m6A methylation in HNSCC cells was accompanied by lnc-H2AFV-1 expression. Western blotting showed that the expression of methyltransferase-like 3 (METTL3) and 14 (METTL14) was consistent with that of lnc-H2AFV-1, whereas the expression of demethylase fat mass and obesity-associated (FTO) was contrary to that of lnc-H2AFV-1. more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL20795
4 Samples
Download data: BIGWIG
Series
Accession:
GSE196769
ID:
200196769
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