GEO DataSets

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of T. denticola infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Treponema denticola; Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

10 Samples

Download data: CSV

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of T. denticola infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Treponema denticola; Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

40 Samples

Download data

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of T. denticola infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Treponema denticola; Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

10 Samples

Download data: CSV

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of T. denticola infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Treponema denticola; Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

10 Samples

Download data: CSV

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of T. denticola infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Treponema denticola; Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

10 Samples

Download data: CSV

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of Tannerella forsythia infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Mus musculus

Type:

Non-coding RNA profiling by array

Platform:

GPL23053

40 Samples

Download data: RCC, TXT

(Submitter supplied) Individual miRNA analyzed were successfully constructed through nanostring technology of a total of 577 mouse miRNAs in 20 number of SHAM mice and 20 number of Streptococcus gordonii infected mice, which have been euthanized on the end of 16 weeks infection study.

Organism:

Mus musculus

Type:

Expression profiling by array

Platform:

GPL33511

40 Samples

Download data: RCC

(Submitter supplied) We report the application of high throughput Illumina sequencing for profiling of small RNAs in saliva of patients who were diagnosed with chronic periodontitis as compared to healthy controls. To date, there is no published literature on salivary microRNA profiling done using the high throughput next-generation sequencing analysis in patients diagnosed with chronic periodontitis. Also, this is the first study of its kind done in an Indian population. more...

Organism:

Homo sapiens

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL11154

2 Samples

Download data: TXT

(Submitter supplied) Transcriptome of T. denticola ATCC 35405 exposed to cannabadiol (5 ug/ml) vs solvent control (methanol)

Organism:

Treponema denticola ATCC 35405

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33272

6 Samples

Download data: TXT

(Submitter supplied) Background: T-cell intracellular antigen (TIA) proteins function as regulators of cell homeostasis. These proteins control gene expression globally at multiple levels in response to dynamic regulatory changes and environmental stresses. Herein we identified a micro(mi)RNA signature associated to transiently TIA-depleted HeLa cells and analyzed the potential role of miRNAs combining genome-wide analysis data on mRNA and miRNA profiles. more...

Organism:

Human alphaherpesvirus 1; Human betaherpesvirus 5; human gammaherpesvirus 4; Betapolyomavirus macacae; Homo sapiens; Murid betaherpesvirus 1; Rattus norvegicus; JC polyomavirus; Murid gammaherpesvirus 4; Betapolyomavirus hominis; Mus musculus; Human immunodeficiency virus 1; Human gammaherpesvirus 8

Type:

Non-coding RNA profiling by array

Platform:

GPL13273

3 Samples

Download data: TXT

(Submitter supplied) Genital C. trachomatis (CT) infection may cause pelvic inflammatory disease (PID) that can lead to tubal factor infertility (TFI). Understanding the pathogenesis of chlamydial complications including the pathophysiological processes within the female host genital tract is of immense importance in preventing adverse pathology. In this study, we tested the hypothesis that the miRNA profile of a acute primary chlamydial infection characterized by temporary inflammation versus the profile associated with chronic genital chlamydial infections that might precipitate PID or TFI will be different. more...

Organism:

Mus musculus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19057

74 Samples

Download data: XLS, XLSX

(Submitter supplied) The present study aimed to compare the miRNA expression profile in individuals with chronic (CP) and aggressive (AP) periodontitis. Eighteen non-smokers individuals (CP = 9 and AP = 9) without any history of systemic diseases or previous periodontal therapy were selected at the Clinics of Periodontology from the Federal University of Minas Gerais. Gingival tissue samples were collected during the initial periodontal therapy. more...

Organism:

Homo sapiens

Type:

Other

Platform:

GPL22992

18 Samples

Download data: TXT

(Submitter supplied) MicroRNAs (miRNAs) are non-protein-coding small RNAs in the size range 19–25 nucleotides (nt) that are cleaved from 70-100 nt hairpin pre-miRNA precursors.MiRNAs bind to complementary sequences in the 3′-untranslated regions of their target mRNAs and induce mRNA degradation or translational repression. Recent intensive studies have revealed that miRNAs play important roles in a large number of biological processes, including cellular differentiation, proliferation and death. more...

Organism:

Homo sapiens

Type:

Non-coding RNA profiling by array

Platform:

GPL18116

17 Samples

Download data: GPR

(Submitter supplied) Using Next Generation Sequencing (NGS) we profiled miRNA expression in the retina and choroid during degenerative and NV phases of oxygen-induced retinopathy (OIR).

Organism:

Rattus norvegicus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL20084

12 Samples

Download data: XLSX

(Submitter supplied) Purpose: The goal of this study is to explore the role of miRNAs in dairy cow response to E. coli and S. aureus, mastitis causing pathogens, is not well understood. Results: The global expression of miRNAs in bovine mammary epithelial cells (MAC-T cells) challenged with heat-inactivated Staphylococcus aureus (S. aureus) or Escherichia coli (E. coli) bacteria (treatments: 6, 12, 24 and 48 hr) and without challenge (control: 0, 6, 12, 24 and 48 hr) was profiled using next-generation-sequencing. more...

Organism:

Bos taurus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17875

13 Samples

Download data: TXT

(Submitter supplied) Bovine Rotavirus (BRV) causes massive economic losses in the livestock industry worldwide. MA-104 cell line has become a convenient tool for discover BRV–host interactions. Notwithstanding, the role of miRNAs in MA-104 cells during BRV infection is still ambiguous. In our study, we performed Illumina RNA sequencing analysis of miRNA libraries of BRV-infected and mock-infected MA-104 cells (at different time points 0 hpi (just after adsorption time (90 min)), 6 hpi, 12 hpi, 24 hpi, 36 hpi and 48 hpi), and the total clean reads 74701041 and 74184124 were obtained from BRV-infected and uninfected cells, respectively. more...

Organism:

Macaca mulatta

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL27943

36 Samples

Download data: XLS

(Submitter supplied) The purpose of this study was to determine, at a global level, the transcriptomic responses of human gingival keratinocytes to T. denticola infection to better understand the disruption of normal barrier immunity that leads to the development of periodontal disease.

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18573

12 Samples

Download data: CSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL16791

90 Samples

Download data

(Submitter supplied) Background As the fetal heart develops, cardiomyocyte proliferation potential decreases while fatty acid oxidative capacity increases, a highly regulated transition known as cardiac maturation. Small noncoding RNAs, such as microRNAs (miRNAs), contribute to the establishment and control of tissue-specific transcriptional programs. However, small RNA expression dynamics and genome wide miRNA regulatory networks controlling maturation of the human fetal heart remain poorly understood. more...

Organism:

Homo sapiens

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL16791

37 Samples

Download data: TXT

(Submitter supplied) Background As the fetal heart develops, cardiomyocyte proliferation potential decreases while fatty acid oxidative capacity increases, a highly regulated transition known as cardiac maturation. Small noncoding RNAs, such as microRNAs (miRNAs), contribute to the establishment and control of tissue-specific transcriptional programs. However, small RNA expression dynamics and genome wide miRNA regulatory networks controlling maturation of the human fetal heart remain poorly understood. more...

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16791

53 Samples

Download data: TXT