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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus laevis		BED
GSE77365	Wnt/β-catenin in Xenopus laevis gastrulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	12	BED TXT	Richard Harland	Apr 25, 2016
GSE75164	Sperm is epigenetically programmed to regulate gene transcription in embryo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Xenopus laevis	106	BED BW TSV TXT SRA Run Selector	Charles Bradshaw	Mar 22, 2016
GSE92382	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	22	BED TXT SRA Run Selector	Simon van Heeringen	Sep 28, 2017
GSE89271	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	17	BED TXT SRA Run Selector	Ian K Quigley	Oct 29, 2016
GSE64551	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	14	BED TXT SRA Run Selector	Ian K Quigley	Nov 04, 2015
GSE59309	Multicilin drives centriole biogenesis via E2f proteins	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	22	BED TXT SRA Run Selector	Ian K Quigley	Jul 10, 2014
GSE153058	Identification and characterization of centromeric sequences in Xenopus laevis	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	15	BED BW FA SRA Run Selector	Owen Kabnick Smith	Jun 24, 2020
GSE78176	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	14	BED SRA Run Selector	Ian K Quigley	Feb 23, 2016
GSE92366	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	77	BED XLS SRA Run Selector	Angela Simeone	Mar 31, 2017
GSE87652	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	20	BED SRA Run Selector	Aaron M Zorn	Feb 28, 2017
GSE112249	Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	4	BED BW SRA Run Selector	Richard Harland	Mar 22, 2019
GSE77363	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	6	BED SRA Run Selector	Richard Harland	Apr 25, 2016
GSE280790	Foxi1 regulates multiple steps of mucociliary development and ionocyte specification through transcriptional and epigenetic mechanisms	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	6	BED BEDGRAPH BIGWIG	Peter Walentek	Nov 03, 2024
GSE115224	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	6	BED SRA Run Selector	Lei Li	Jan 16, 2019
GSE125982	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Xenopus laevis	36	BED BROADPEAK NARROWPEAK SRA Run Selector	Angela Simeone	Jun 05, 2020
GSE237049	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Xenopus laevis	9	BED BEDGRAPH	Roman R Stocsits	Oct 25, 2023
GSE237051	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus Xenopus laevis	28	BED BEDGRAPH HIC	Roman R Stocsits	Oct 25, 2023
GSE76059	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	11	BED SRA Run Selector	Simon van Heeringen	Oct 28, 2016
GSE138905	ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	6	BED SRA Run Selector	Peter S Klein	Feb 26, 2020
GSE76363	3D chromosomal capture of X. laevis	Other	Xenopus laevis	4	BED SRA Run Selector	Ian K Quigley	Dec 29, 2015