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82 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			IDAT
GSE224850	H1FOO-DD promotes efficiency and uniformity in reprogramming to naive pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	168	BED IDAT MTX TSV TXT	Akira Kunitomi	May 01, 2024
GSE204813	Co-expression analysis reveals gene cluster associated with methylation of enhancers and chromosomal instability under TP63 and TRIM29 regulation.	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BW IDAT NARROWPEAK	Rinat I Sultanov	Mar 19, 2024
GSE253202	Altered DNA methylation underlies monocyte dysregulation and immune exhaustion memory in sepsis	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	75	BED BW IDAT	Blake Alexander Caldwell	Mar 05, 2024
GSE224459	TET1 catalytic activity is required for reprogrammign of imprinting control regions and the patterning of sperm-specific hypomethylated regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	63	BEDGRAPH BW CSV IDAT NARROWPEAK	Rexxi Diptya Prasasya	Feb 26, 2024
GSE237665	Select EZH2 inhibitors enhance the viral mimicry effects of DNMT inhibition through a mechanism involving Calcium-Calcineurin-NFAT signaling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	64	BW IDAT	Scott Rothbart	Feb 26, 2024
GSE131318	Metabolic changes during human adipocyte differentiation promote stable DNA hydroxymethylation and binding of acetylated NEIL1 to adipogenic enhancers	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	77	BW IDAT	Clarissa Feuerstein-Akgoz	Feb 01, 2024
GSE247428	CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	10	BIGWIG IDAT NARROWPEAK SF	Wolfgang Wagner	Nov 24, 2023
GSE202776	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer	Expression profiling by high throughput sequencing Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	386	BW IDAT NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE198232	Cytosolic pattern recognition receptors respond to EZH2-inhibition induced viral mimicry response that eliminates splenic B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Mus musculus	70	BW CSV IDAT TXT	Frederick Andrew Dick	Oct 18, 2023
GSE228665	Functional interrogation of twenty Type 2 Diabetes-associated genes using isogenic hESC-derived β-like cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing SNP genotyping by SNP array	Homo sapiens	139	IDAT TXT	Shuibing Chen	Oct 10, 2023
GSE211445	C99R mutation in IRF4 drives a novel gain of function binding and gene upregulation in classical Hodgkin lymphoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	63	IDAT	Pierre Daniel Cauchy	Jul 19, 2023
GSE182317	Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by genome tiling array Methylation profiling by array Other	Homo sapiens	171	HIC IDAT NARROWPEAK RDS TXT	Rico Hagelaar	Apr 29, 2023
GSE205283	β-catenin programs a tissue-specific epigenetic vulnerability in aggressive adrenocortical carcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Drosophila melanogaster Homo sapiens	48	BW IDAT TXT	Antonio Marcondes Lerario	Apr 25, 2023
GSE210277	Synthetic epigenetic reprogramming of mesenchymal to epithelial states using the CRISPR/dCas9 platform in triple negative breast cancer	Methylation profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	45	BROADPEAK BW IDAT NARROWPEAK	Joe Cursons	Apr 17, 2023
GSE224061	Epigenetic dosage identifies two major and functionally distinct β cell subtypes	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	80	BW IDAT	Luca Fagnocchi	Feb 16, 2023
GSE171153	Integration of human genetics with single cell accessible chromatin profiles across phenotypes identifies islet cell type-specific regulatory programs of type 2 diabetes progression	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by genome tiling array Expression profiling by high throughput sequencing	Homo sapiens	110	IDAT	Maike Sander	Feb 07, 2023
GSE198674	RNA mis-splicing sensitizes SETD2-mutant kidney cancer cells to DNMTi	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	132	BEDGRAPH BROADPEAK IDAT NARROWPEAK	Hyo Sik Jang	Jan 27, 2023
GSE207266	Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens Mus musculus	68	IDAT NARROWPEAK	Kyle S Smith	Sep 23, 2022
GSE155707	HDAC inhibition suppresses telomerase activity in neuroblastoma cells harboring TERT rearrangements	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	46	BED IDAT	January 3rd Weiner	Aug 04, 2022
GSE163331	GATA6 is predicted to regulate DNA methylation in an in vitro model of human hepatocyte differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by array	Homo sapiens	68	BED IDAT	Takahiro Suzuki	May 04, 2022