GEO Browser - GEO

Series

Samples

Platforms

DataSets

29 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Clostridioides difficile		TXT
GSE219066	Clostridioides difficile: R20291_pMTL84151 transconjugant (C) vs. R20291_pMTL84151-03890 (T1)	Expression profiling by array	Clostridioides difficile Clostridioides difficile R20291	6	TXT XLSX	JunJia Gong	Nov 30, 2023
GSE213005	A network of small RNAs regulates sporulation initiation in C. difficile	Other	Clostridioides difficile	8	TXT	Franziska Faber	Dec 31, 2022
GSE220119	HexSDF are Required for Synthesis of a Novel Glycolipid that Mediates Daptomycin and Bacitracin Resistance in C. difficile	Expression profiling by high throughput sequencing	Clostridioides difficile	6	TXT	Anthony Pannullo	Dec 10, 2022
GSE199109	The licorice metabolite enoxolone attenuates Clostridioides difficile pathophysiology by corrupting its metabolic and toxin production networks	Expression profiling by high throughput sequencing	Clostridioides difficile	6	TXT	Richard Lee	Mar 24, 2022
GSE85982	Clostridium difficile Biofilm with and without deoxycholate at 48H	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Aug 01, 2021
GSE149245	Comparison of the expression profiles of 630E strain and a sig54 mutant after 6h of growth	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Aug 28, 2020
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6	TXT	Evelyne Forano	Oct 01, 2019
GSE85980	Genome-wide comparison of gene expression between biofilm and planktonic growth	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Dec 25, 2018
GSE115638	The C. difficile clnRAB operon initiates adaptations to the host environment in response to LL-37	Expression profiling by high throughput sequencing	Clostridioides difficile	8	TXT SRA Run Selector	Gregory K Tharp	Jul 30, 2018
GSE114463	Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach	Expression profiling by high throughput sequencing	Clostridioides difficile	12	CSV TAB TXT SRA Run Selector	Michael Beckstette	Jul 15, 2018
GSE109453	Clostridium difficile response to iron limitation	Expression profiling by array	Clostridioides difficile Clostridioides difficile 630	18	TXT	Paul Carlson	Jan 20, 2018
GSE109175	Clostridium difficile response to oxygen	Expression profiling by array	Clostridioides difficile Clostridioides difficile 630	6	TXT	Paul Carlson	Jan 14, 2018
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE85981	Global transcriptional control by the alternative sigma factor SigB in Clostridium difficile	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Jul 07, 2017
GSE42469	Clostridium difficile C630E: growth in TY with 30 mM proline vs. growth in TY alone	Expression profiling by array	Clostridioides difficile	2	GPR TXT XLS	Monot Marc	Oct 01, 2015
GSE42471	Comparison of the expression profiles of the 630E (JIR8094) strain and a prdR mutant (LB-CD8) after 4h growth in TY supplemented with L-proline	Expression profiling by array	Clostridioides difficile	2	GPR TXT XLS	Monot Marc	Oct 01, 2015
GSE56818	Global transcriptional response of Clostridium difficile carrying the ϕCD38-2 prophage	Expression profiling by high throughput sequencing	Clostridioides difficile	4	TXT SRA Run Selector	Louis-Charles Fortier	Dec 22, 2014
GSE49168	Comparison of the expression profiles of 630E strain and a hfQ mutant after 7.5h of growth in Tyt	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Jul 15, 2014
GSE55273	Comparison of the expression profiles of 630E strain and an Hfq antisense after 7.5h of growth in Tyt	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Jul 15, 2014
GSE43198	Comparison of the expression profiles of the 630E strain and a sigE mutant after 14h of growth	Expression profiling by array	Clostridioides difficile	4	GPR TXT XLS	Monot Marc	Feb 20, 2014