GEO Browser - GEO

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358 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Plasmodium falciparum
GSE28287	Plasmodium falciparum CNV-SNP chip optimization	Genome variation profiling by genome tiling array	Plasmodium falciparum	44	BASES PAIR	Michael Ferdig	Apr 01, 2011
GSE33002	A major genome region underlying artemisinin resistance in malaria	Genome variation profiling by genome tiling array	Plasmodium falciparum	167	BASES	Michael Ferdig	May 01, 2012
GSE58402	Ribosome Profiling in P. falciparum asexual blood stages	Expression profiling by high throughput sequencing Other	Plasmodium falciparum	10	BED TXT WIG SRA Run Selector	Joseph DeRisi	Dec 01, 2014
GSE63369	A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	39	BED SRA Run Selector	Krishanpal Karmodiya	Sep 23, 2015
GSE85478	Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	24	BED XLSX SRA Run Selector	Xueqing Maggie Lu	May 10, 2017
GSE104075	Chromatin accessibility based characterization of gene regulatory network of P. falciparum blood stage development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	26	BED BEDGRAPH SRA Run Selector	Christa Toenhake	Apr 11, 2018
GSE108716	Genome-wide mapping of RNAPII and its phosphoisoforms in Plasmodium falciparum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	30	BED BEDGRAPH BW NARROWPEAK TXT XLS SRA Run Selector	Mark Stephen Featherstone	Dec 30, 2020
GSE109599	Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	17	BED BEDGRAPH TXT SRA Run Selector	Jose Luis Ruiz Rodriguez	Jul 06, 2018
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE120448	PfAP2-G ChIP-seq in committed schizonts, sexual rings, and stage I gametocytes	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	12	BED BIGWIG SRA Run Selector	Manuel Llinas	Feb 11, 2019
GSE120488	PfAP2-G and PfAP2-I ChIP-seq in schizonts	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	6	BED BIGWIG SRA Run Selector	Manuel Llinas	Feb 11, 2019
GSE125566	Regulation of sexual differentiation is linked to invasion in malaria parasites	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	62	BED BIGWIG TXT	Manuel Llinas	Feb 08, 2019
GSE134268	PfAP2-G ChIP-seq in stage I gametocytes derived via next cycle conversion (NCC) and same cycle conversion (SCC)	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	8	BED BIGWIG SRA Run Selector	Manuel Llinas	Jul 17, 2019
GSE135002	Conditional expression of PfAP2-G for controlled massive sexual conversion in Plasmodium falciparum. [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	8	BED BEDGRAPH FASTA SRA Run Selector	Oriol Llorà-Batlle	Jun 10, 2020
GSE141759	HMGB1 is required for virulence gene expression via configuration of genome architecture in Plasmodium falciparum [HiC]	Other	Plasmodium falciparum	8	BED MATRIX SRA Run Selector	meng liu	Apr 14, 2021
GSE141760	HMGB1 is required for virulence gene expression via configuration of genome architecture in Plasmodium falciparum [HM-ChIP]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	12	BED SRA Run Selector	meng liu	Apr 14, 2021
GSE141761	HMGB1 is required for virulence gene expression via configuration of genome architecture in Plasmodium falciparum [TF ChIP]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	6	BED BW SRA Run Selector	meng liu	Apr 14, 2021
GSE149773	A transcriptional repressor programs gametocytogenesis in human malaria parasites (PfAP2-G5) [ChIP-Seq TF]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	18	BED BW SRA Run Selector	Shijun Shen	Aug 03, 2021
GSE166390	Expression patterns of Plasmodium falciparum clonally variant genes at the onset of a blood infection in non-immune humans [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	4	BED NARROWPEAK SRA Run Selector	Anastasia Pickford	Jul 01, 2021
GSE180437	Roles of PfAP2-EXP2 in Plasmodium falciparum blood-stage development [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	3	BED BW SRA Run Selector	Mei Jiang	Feb 02, 2022