GEO Browser - GEO

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51 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Strongylocentrotus purpuratus
GSE76067	Gene expression alterations in SoxC knockdown sea urchin embryos	Expression profiling by high throughput sequencing	Strongylocentrotus purpuratus	2	TXT SRA Run Selector	Robert C Angerer	Dec 16, 2015
GSE80012	Gene expression alteration in FoxQ2 knockdown sea uchin embryos	Expression profiling by array	Strongylocentrotus purpuratus	2	PAIR TXT	Robert C Angerer	Apr 07, 2016
GSE160460	PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)	Other	Strongylocentrotus purpuratus	10	BED BW SRA Run Selector	Cesar Arenas-Mena	Jun 03, 2021
GSE160461	PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Strongylocentrotus purpuratus	5	BED BIGWIG BW NARROWPEAK SRA Run Selector	Cesar Arenas-Mena	Jun 03, 2021
GSE160462	PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Strongylocentrotus purpuratus	6	BED BW SRA Run Selector	Cesar Arenas-Mena	Jun 03, 2021
GSE160463	PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos	Other Genome binding/occupancy profiling by high throughput sequencing	Strongylocentrotus purpuratus	21	BIGWIG BW NARROWPEAK	Cesar Arenas-Mena	Jun 03, 2021
GSE234139	Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Strongylocentrotus purpuratus	15	BED BW NARROWPEAK	Cesar Arenas-Mena	Jul 27, 2023
GSE234140	Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [PRO-seq]	Other Third-party reanalysis	Strongylocentrotus purpuratus	17	BED BW	Cesar Arenas-Mena	Jul 27, 2023
GSE234143	Widespread priming of transcriptional regulatory elements by incipient accessibility or Pol II pause in early embryos of the sea urchin Strongylocentrotus purpuratus	Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Strongylocentrotus purpuratus	32	BW NARROWPEAK	Cesar Arenas-Mena	Jul 27, 2023
GSE198320	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Strongylocentrotus purpuratus	10	BED TSV	Maria Ina Arnone	Aug 01, 2022
GSE240882	Molecular characterization of the sea urchin larva photosensory system: Insights into the evolution of a Go-Opsin positive neuronal population	Expression profiling by high throughput sequencing	Strongylocentrotus purpuratus	2	RDS	Maria Ina Arnone	Sep 13, 2023
GSE241045	Single-cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome	Expression profiling by high throughput sequencing	Strongylocentrotus purpuratus	6	RDS	Maria Ina Arnone	Aug 17, 2023
GSE195869	Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species	Methylation profiling by high throughput sequencing	Abronia anzuetoi Acanthosaura Acanthurus triostegus Accipiter gentilis Accipiter nisus Acinonyx Acomys Acryllium vulturinum Agapornis Agapornis canus Agapornis lilianae Agapornis personatus Agapornis taranta Ailurus fulgens Alectis ciliaris Alitta succinea Amandava subflava Amazona Amazona agilis Amblyglyphidodon leucogaster Ambystoma Ambystoma andersoni Ambystoma mexicanum Ammodytes dubius Ammodytes hexapterus Ammotragus Anas platyrhynchos Anoplopoma fimbria Antidorcas Antilope Aonyx cinereus Aotidae Aplonis panayensis Apodemus flavicollis Apodemus sylvaticus Apostichopus parvimensis Aptenodytes patagonicus Aquila heliaca Ara Ara ararauna Ardea Ariopsis felis Ascidiella aspersa Asio otus Astrochelys radiata Astrochelys yniphora Athene noctua Atherinomorus vaigiensis Axis axis Balearica pavonina Bathymaster signatus Batoidea Bison bonasus Boa constrictor Bodianus diana Boltenia echinata Boltenia ovifera Bos Boselaphus tragocamelus Bothriechis schlegelii Botryllus schlosseri Brachylophus Branchiostoma floridae Bubalus Bubo bubo Buteo Buteo buteo Buteo lagopus Bycanistes bucinator Cacatua alba Caiman yacare Callithrix jacchus Callocephalon fimbriatum Callorhinchus milii Caloenas nicobarica Calyptocephallela gayi Camelus dromedarius Camelus ferus Canis aureus Canis lupus Canis lupus familiaris Canis lupus lycaon Cantherhines pardalis Capra Capra aegagrus Capreolus capreolus Capricornis Capromyidae Capromys pilorides Carcharias taurus Cariamidae Carollia perspicillata Castoridae Casuarius casuarius Caviidae Cebinae Centropomus robalito Centropristis striata Centropyge heraldi Cephalopholis miniata Cercopithecus Cervidae Cervus elaphus Cervus nippon Chaetodon lineolatus Chaetodon lunula Chamaeleo calyptratus Chamaeleonidae Charadriidae Chauna torquata Cheilodipterus quinquelineatus Cheilopogon pinnatibarbatus californicus Chelydra serpentina Chiroxiphia pareola Chloris chloris Chloropsis Choerodon fasciatus Chromis punctipinnis Chrysopelea Ciconia ciconia Ciconiidae Ciona intestinalis Circus aeruginosus Circus cyaneus Cirrhilabrus lineatus Cirrhilabrus roseafascia Clavelina picta Clupea harengus Coccothraustes Coliiformes Colobus guereza Colobus polykomos Columba livia Columbidae Connochaetes Copsychus malabaricus Coracias cyanogaster Coracias garrulus Coris caudimacula Coris gaimard Cornufer guentheri Coronella austriaca Correlophus ciliatus Corucia zebrata Corvus Corvus corax Corvus corone Corvus frugilegus Coryphaenoides acrolepis Coturnix coturnix Coturnix delegorguei Cricetinae Cricetomyinae Cricetus Crocodylia Crotalus Cryptacanthodes maculatus Ctenochaetus striatus Cucumaria frondosa Cuora mccordi Cuora mouhotii Cyanocompsa brissonii Cyanoliseus patagonus Cyclopsitta diophthalma Cyclopterus lumpus Cyclura Cyclura cornuta Cygnus cygnus Cygnus melancoryphus Cynictis Cynomys Cynoscion regalis Cyprinus carpio Dama dama Danio rerio Dascyllus aruanus Dasypodidae Dendrocygna viduata Dinemellia Diodon hystrix Dolichotis Dolichotis patagonum Doryteuthis pealeii Dracaena guianensis Dromaius novaehollandiae Ducula bicolor Duttaphrynus melanostictus Echinarachnius parma Ecsenius Ecteinascidia turbinata Elephas maximus indicus Eliomys quercinus Elops affinis Embiotoca jacksoni Emydidae Equus Equus asinus asinus Equus zebra Erethizon Erinaceidae Erpeton Erythrura Esox lucius Eudyptes chrysocome Eunectes Euplectes Euplectes orix Eurypygidae Falco cherrug Falco peregrinus Falco tinnunculus Felis catus Felis silvestris Fistularia commersonii Folivora Fromia Fromia indica Furcifer pardalis Gadus chalcogrammus Gadus morhua Galeocerdo cuvier Gallicolumba Gallus Gallus gallus Garrulus glandarius Gekkonidae Geochelone Geoemyda spengleri Geopelia placida Geronticus eremita Giraffa giraffa Glis glis Glyptocephalus cynoglossus Glyptocephalus zachirus Graptemys Grus japonensis Grus paradisea Gymnothorax moringa Gypaetus Haemulon flavolineatum Haliaeetus albicilla Haliaeetus leucocephalus Halichoeres trimaculatus Halocynthia pyriformis Heleophrynidae Heloderma Hemilepidotus jordani Hemisphaeriodon Hemitragus Hemitripterus americanus Heterocephalus Hippoglossina oblonga Hippoglossoides elassodon Hippoglossoides platessoides Hippotragus Hippotragus equinus Histrio histrio Holothuria Holothuria atra Holothuria cinerascens Homarus americanus Hoplobatrachus tigerinus Hydrochoerus hydrochaeris Hypanus americanus Hypselecara coryphaenoides Hystricidae Iguanidae Illex illecebrosus Incilius alvarius Irena puella Jacanidae Jaculus Kobus Kobus leche Labroides bicolor Laemanctus Lagostomus maximus Lama glama Lampropeltis Lamprotornis chalcurus Leiocephalus Lemur Leontocebus fuscicollis Leontopithecus Leontopithecus chrysomelas Lepas anatifera Lepidopsetta polyxystra Leptailurus Leptoclinus maculatus Leptoptilos crumeniferus Lepus europaeus Lepus timidus Lethenteron camtschaticum Lethrinus atkinsoni Leucoraja erinacea Leucoraja ocellata Lissemys punctata Loligo vulgaris Lophius piscatorius Loriculus galgulus Loweina rara Loweina terminata Lumpenus lampretaeformis Lutjanus mahogoni Lutjanus quinquelineatus Lutra lutra Lynx lynx Lyrurus tetrix Lytechinus variegatus Macaca Macaca silenus Macaca sylvanus Macropodidae Macropus Macroscelidea Macroscelides proboscideus Magallana gigas Malacochersus Marmota Martes foina Meles meles Melopsittacus Merops apiaster Merops bullockoides Milvus milvus Mimus polyglottos Molgula citrina Monacanthidae Morone saxatilis Mullus surmuletus Mungos mungo Muntiacus Mus musculus Musophaga Musophagidae Mustela Mustela putorius Mustelidae Mustelus canis Mya arenaria Myocastor coypus Myoxocephalus octodecemspinosus Myzopsetta ferruginea Naja Nanger dama Nardoa novaecaledoniae Nasua Natrix tessellata Nectariniidae Negaprion brevirostris Neoniphon sammara Neurergus Notamacropus parma Notamacropus rufogriseus Nothobranchius furzeri Nyctereutes Nymphicus hollandicus Octopus vulgaris Onuxodon fowleri Ophioderma panamensis Ophiopteris papillosa Ophiothrix spiculata Oplurus Oryctolagus cuniculus Osteoglossum bicirrhosum Ostorhinchus aureus Ostorhinchus moluccensis Ostorhinchus rueppellii Ostrea edulis Otaria Ovis aries Ovis orientalis Oxycercichthys veliferus Oxycheilinus digramma Oxylebius pictus Pachyuromys Padda oryzivora Panthera leo Panthera onca Panthera pardus Panthera tigris Papio Papio hamadryas Paracanthurus hepatus Paracirrhites forsteri Paralichthys dentatus Parapercis xanthozona Paroedura picta Parupeneus spilurus Parus major Passer domesticus Patiria miniata Pelecanus Pelecanus crispus Penaeus Perdix perdix Petauridae Petaurus breviceps Phalacrocorax carbo Phascolarctos cinereus Phasianus colchicus Philomachus Phloeomys Phocidae Phodopus campbelli Phoenicopteriformes Photoblepharon palpebratum Phyllopteryx taeniolatus Picus viridis Pisaster brevispinus Pisaster giganteus Pithecia pithecia Pitta moluccensis Platax teira Plegadis falcinellus Pleoticus muelleri Pleurogrammus monopterygius Ploceus cucullatus Podothecus accipenserinus Pogona barbata Pollachius virens Polychrus marmoratus Polypedates otilophus Pomacentrus coelestis Pomatomus saltatrix Pongo Potamochoerus porcus Prionotus carolinus Pristigenys alta Probosciger aterrimus Procyon lotor Psammomys obesus Psarisomus dalhousiae Pseudanthias Pseudanthias ventralis Pseudobalistes fuscus Pseudomonacanthus peroni Psittacus Pterocaesio marri Pteropus Ptilinopus Ptilinopus pulchellus Puma concolor Pycnonotus barbatus Python molurus Python regius Pythonidae Pytilia melba Rangifer tarandus Rattus norvegicus Rattus rattus Recurvirostra avosetta Rhabdamia gracilis Rhacophorus reinwardtii Rhea americana Rhinecanthus aculeatus Rhinocerotidae Rhinogobiops nicholsii Rhinoptera bonasus Rhyticeros narcondami Riftia pachyptila Rollulus Rupicapra rupicapra Saccoglossus kowalevskii Saguinus Saguinus imperator Saguinus mystax Saguinus oedipus Saimiriinae Salmo salar Salmo trutta Salvelinus alpinus Salvelinus umbla Sarcophilus Sauromalus Scandentia Scincidae Sciurus vulgaris Scolopsis bilineata Scophthalmus aquosus Scopus umbretta Scyliorhinus retifer Sebastes atrovirens Sebastes borealis Sebastes caurinus Sebastes chrysomelas Sebastes constellatus Sebastes hopkinsi Sebastes miniatus Sebastes mystinus Sebastes norvegicus Sebastes ovalis Sebastes paucispinis Sebastes semicinctus Sebastolobus alascanus Semicossyphus pulcher Serinus Shinisaurus crocodilurus Spatula querquedula Spermophilus Spheniscus humboldti Sphoeroides maculatus Spinus spinus Squalus acanthias Stenotomus chrysops Stichopus chloronotus Strigiformes Strix aluco Strix uralensis Strongylocentrotus droebachiensis Strongylocentrotus purpuratus Struthio camelus Sturnus vulgaris Styela montereyensis Sufflamen chrysopterum Suricata Sus scrofa Sus scrofa domesticus Sylvia atricapilla Tamias Tamiops Tapirus Taurotragus Tayassuidae Terrapene Testudinidae Testudo hermanni Testudo kleinmanni Tetrao urogallus Tetrastes bonasia Theloderma Theropithecus gelada Thunnus albacares Thyonella gemmata Tiliqua rugosa Tiliqua scincoides Tinca tinca Tockus alboterminatus Tockus deckeni Tockus flavirostris Tockus nasutus Trachemys Trachemys scripta elegans Trachemys scripta scripta Trachyphonus erythrocephalus Tragelaphus angasii Tragelaphus spekii Tragulus javanicus Triglops scepticus Tringa totanus Trioceros jacksonii Tupaia Upupa epops Uraeginthus bengalus Uromastyx Uromastyx ocellata Urophycis tenuis Ursus Ursus arctos Vanellus armatus Varanus Varanus exanthematicus Varanus gouldii Varecia Vermilingua Vicugna Vicugna pacos Vidua paradisaea Vipera ammodytes Vipera berus Vulpes vulpes Xenagama wilmsi Xiphias gladius Yangochiroptera Yinpterochiroptera Zamenis longissimus Zaprora silenus Zenopsis conchifer Zoarces americanus Zosteropidae	3023	BED SRA Run Selector	Christoph Bock	Jun 18, 2022
GSE96940	The sea urchin larval response to immune challenge with Vibrio diazotrophicus	Expression profiling by high throughput sequencing	Strongylocentrotus purpuratus	4	TXT SRA Run Selector	Katherine Michele Buckley	Mar 24, 2017
GSE97448	Gene expression in tissues from an immune challenged adult sea urchin (Strongylocentrotus purpuratus)	Expression profiling by high throughput sequencing	Strongylocentrotus purpuratus	2	TXT SRA Run Selector	Katherine Michele Buckley	Apr 06, 2017
GSE97267	Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes	Expression profiling by high throughput sequencing	Danio rerio Strongylocentrotus purpuratus	8	TXT SRA Run Selector	Demian Burguera	Feb 14, 2018
GSE95651	Whole genome developmental time course of Tn5 transposon accessible chromatin patterns in sea urchin embryos	Genome binding/occupancy profiling by high throughput sequencing	Strongylocentrotus purpuratus	21	BED SRA Run Selector	Robert Andrew Cameron	Mar 03, 2017
GSE89862	Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata)	Genome binding/occupancy profiling by high throughput sequencing	Patiria miniata Strongylocentrotus purpuratus	4	BED BEDGRAPH SRA Run Selector	Gregory Cary	Dec 01, 2016
GSE89865	Genome-wide use of high and low affinity Tbrain transcription factor binding sites during echinoderm development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Patiria miniata Strongylocentrotus purpuratus	10	BED BEDGRAPH TXT	Gregory Cary	Dec 01, 2016
GSE223913	Pol II pausing is a milestone on the road to complex animals	Other	Capsaspora owczarzaki Creolimax fragrantissima Daphnia pulex Dictyostelium discoideum Dryas iulia Escherichia coli Haloferax mediterranei Mus musculus Nematostella vectensis Perkinsus marinus Sphaeroforma arctica Strongylocentrotus purpuratus	46		Alexandra Georgiana Chivu	Feb 05, 2024