51 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterStrongylocentrotus purpuratus
GSE73545
The evolution of DNA methylation inheritance and programming in animals
22 jiang liu Nov 17, 2019
GSE89862
Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata)
4 Gregory Cary Dec 01, 2016
GSE89865
Genome-wide use of high and low affinity Tbrain transcription factor binding sites during echinoderm development
10 Gregory Cary Dec 01, 2016
GSE95651
Whole genome developmental time course of Tn5 transposon accessible chromatin patterns in sea urchin embryos
  • Link icon Strongylocentrotus purpuratus
21 Robert Andrew Cameron Mar 03, 2017
GSE96927
Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage
  • Link icon Strongylocentrotus purpuratus
10 Charles A Ettensohn Apr 01, 2018
GSE131370
Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis
  • Link icon Strongylocentrotus purpuratus
2 Jian Ming Khor Jul 10, 2019
GSE160460
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)
  • Link icon Strongylocentrotus purpuratus
10 Cesar Arenas-Mena Jun 03, 2021
GSE160461
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq)
  • Link icon Strongylocentrotus purpuratus
5 Cesar Arenas-Mena Jun 03, 2021
GSE160462
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)
  • Link icon Strongylocentrotus purpuratus
6 Cesar Arenas-Mena Jun 03, 2021
GSE169227
Global patterns of enhancer activity during sea urchin embryogenesis assessed by eRNA profiling
  • Link icon Strongylocentrotus purpuratus
9 Jian Ming Khor Jun 30, 2021
GSE188331
Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq
15 Ksenia Skvortsova Nov 08, 2021
GSE188333
Base-resolution DNA methylation maps of purple sea urchin (Strongylocentrotus purpuratus)
  • Link icon Strongylocentrotus purpuratus
8 Ksenia Skvortsova Nov 08, 2021
GSE188334
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues
31 Ksenia Skvortsova Nov 08, 2021
GSE195869
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species
3023 Christoph Bock Jun 18, 2022
GSE198320
An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens
  • Link icon Strongylocentrotus purpuratus
10 Maria Ina Arnone Aug 01, 2022
GSE234139
Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [ATAC-seq]
  • Link icon Strongylocentrotus purpuratus
15 Cesar Arenas-Mena Jul 27, 2023
GSE234140
Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [PRO-seq]
  • Link icon Strongylocentrotus purpuratus
17 Cesar Arenas-Mena Jul 27, 2023
GSE66900
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
63 Carlos Gómez May 18, 2015
GSE169088
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
32 Olga Dudchenko Apr 23, 2021
GSE160463
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos
  • Link icon Strongylocentrotus purpuratus
21 Cesar Arenas-Mena Jun 03, 2021