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Platform GPL108 Query DataSets for GPL108
Status Public on Apr 02, 2002
Title Yeast Splicing Chip v4.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
 
Description This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Keywords = Splicing
 
Contributor(s) Clark TA, Sugnet CW, Ares M
Submission date Mar 15, 2002
Last update date Nov 08, 2007
Contact name Manuel Ares
E-mail(s) ares@biology.ucsc.edu
Phone 831 459-4628
Organization name UC Santa Cruz
Street address
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Samples (12) GSM1500, GSM1501, GSM1502, GSM1503, GSM1504, GSM1505 
Series (1)
GSE34 Prp4-1 temperature shift

Data table header descriptions
ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Intron Is the Feature from an Intron-containing gene?
Block Block that the spot was printed in
Row Row within the block
Column Column within the block

Data table
ID Name ORF Type Intron Block Row Column
1 Cy3 Cy3 Pos. Control 1 1 1
2 Printing_Buffer Printing_Buffer Blank 1 1 2
3 MTR2_SJ1c YKL186C SJ yes 1 1 3
4 Printing_Buffer Printing_Buffer Blank 1 1 4
5 5.8s_rRNA 5.8s_rRNA rRNA 1 1 5
6 18s_rRNA 18s_rRNA rRNA 1 1 6
7 25s_rRNA 25s_rRNA rRNA 1 1 7
8 Printing_Buffer Printing_Buffer Blank 1 1 8
9 RPS26A_SJ YGL189C SJ yes 1 1 9
10 RPS29A_SJa YLR388w Negative yes 1 1 10
11 Printing_Buffer Printing_Buffer Blank 1 1 11
12 Printing_Buffer Printing_Buffer Blank 1 1 12
13 Printing_Buffer Printing_Buffer Blank 1 1 13
14 Printing_Buffer Printing_Buffer Blank 1 1 14
15 RPL26B_SJ YGR034W SJ yes 1 1 15
16 BioB BioB E.Coli 1 1 16
17 BioC BioC E.Coli 1 1 17
18 BioD BioD E.Coli 1 1 18
19 Cre Cre E.Coli 1 1 19
20 lamB lamB E.Coli 1 1 20

Total number of rows: 5760

Table truncated, full table size 211 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided
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