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Status
Public on Jan 16, 2012
Title
Agilent-037237 P.falciparum_Pf3D7v7.1_Transcriptome_apimito
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Plasmodium falciparum Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
DesignID: 037237
Submission date
Jan 15, 2012
Last update date
Jan 24, 2019
Contact name
Bjorn FC Kafsack
Organization name
Weill Cornell Medicine
Department
Microbiology & Immunology
Street address
1300 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Samples (492)
GSM1627532 , GSM1627533 , GSM1627534 , GSM1627535 , GSM1627536 , GSM1627537
GSM1627538 ,
GSM1627539 ,
GSM1627540 ,
GSM1627541 ,
GSM1627542 ,
GSM1627543 ,
GSM1627544 ,
GSM1627545 ,
GSM1627546 ,
GSM1627547 ,
GSM1627548 ,
GSM1627549 ,
GSM1627550 ,
GSM1627551 ,
GSM1627552 ,
GSM1627553 ,
GSM1627554 ,
GSM1627555 ,
GSM1627556 ,
GSM1627557 ,
GSM1627558 ,
GSM1627559 ,
GSM1627560 ,
GSM1627561 ,
GSM1627562 ,
GSM1627563 ,
GSM1627564 ,
GSM1627565 ,
GSM1627566 ,
GSM1627567 ,
GSM1627568 ,
GSM1627569 ,
GSM1627570 ,
GSM1627571 ,
GSM1627572 ,
GSM1627573 ,
GSM1627574 ,
GSM1627575 ,
GSM1627576 ,
GSM1627577 ,
GSM1627578 ,
GSM1627579 ,
GSM1627580 ,
GSM1627581 ,
GSM1627582 ,
GSM1627583 ,
GSM1627584 ,
GSM1627585 ,
GSM1627586 ,
GSM1627587 ,
GSM1627588 ,
GSM1627589 ,
GSM1627590 ,
GSM1627591 ,
GSM1627592 ,
GSM1627593 ,
GSM1627594 ,
GSM1627595 ,
GSM1627596 ,
GSM1627597 ,
GSM1627598 ,
GSM1627599 ,
GSM1627600 ,
GSM1627601 ,
GSM1627602 ,
GSM1627603 ,
GSM1627604 ,
GSM1627605 ,
GSM1627606 ,
GSM1627607 ,
GSM1627608 ,
GSM1627609 ,
GSM1627610 ,
GSM1627611 ,
GSM1627612 ,
GSM1627613 ,
GSM1627614 ,
GSM1627615 ,
GSM1627616 ,
GSM1627617 ,
GSM1627618 ,
GSM1627619 ,
GSM1627620 ,
GSM1627621 ,
GSM1627622 ,
GSM1627623 ,
GSM1627624 ,
GSM1627625 ,
GSM1627626 ,
GSM1627627 ,
GSM1627628 ,
GSM1627629 ,
GSM1627630 ,
GSM1627631 ,
GSM1627632 ,
GSM1627633 ,
GSM1627634 ,
GSM1627635 ,
GSM1627636 ,
GSM1627637 ,
GSM1627638 ,
GSM1627639 ,
GSM1627640 ,
GSM1627641 ,
GSM1627642 ,
GSM1627643 ,
GSM1627644 ,
GSM1627645 ,
GSM1627646 ,
GSM1627647 ,
GSM1627648 ,
GSM1627649 ,
GSM1627650 ,
GSM1627651 ,
GSM1627652 ,
GSM1627653 ,
GSM1627654 ,
GSM1627655 ,
GSM1627656 ,
GSM1627657 ,
GSM1627658 ,
GSM1627659 ,
GSM1627660 ,
GSM1627661 ,
GSM1627662 ,
GSM1627663 ,
GSM1627664 ,
GSM1627665 ,
GSM1627666 ,
GSM1627667 ,
GSM1627668 ,
GSM1627669 ,
GSM1627670 ,
GSM1627671 ,
GSM1627672 ,
GSM1627673 ,
GSM1627674 ,
GSM1627675 ,
GSM1868527 ,
GSM1868528 ,
GSM1868529 ,
GSM1868530 ,
GSM1868531 ,
GSM1868532 ,
GSM1868533 ,
GSM1868534 ,
GSM1868535 ,
GSM1868536 ,
GSM1868537 ,
GSM1868538 ,
GSM1868539 ,
GSM1868540 ,
GSM1868541 ,
GSM1868542 ,
GSM1868543 ,
GSM1868544 ,
GSM1868545 ,
GSM1868546 ,
GSM1868547 ,
GSM1868548 ,
GSM1868549 ,
GSM1868550 ,
GSM1868551 ,
GSM1868552 ,
GSM1868553 ,
GSM1868554 ,
GSM1868555 ,
GSM1868556 ,
GSM1868557 ,
GSM1868558 ,
GSM1868559 ,
GSM1868560 ,
GSM1868561 ,
GSM1868562 ,
GSM1868563 ,
GSM1868564 ,
GSM1868565 ,
GSM1868566 ,
GSM1868567 ,
GSM1868568 ,
GSM1868569 ,
GSM1868570 ,
GSM1868571 ,
GSM1868572 ,
GSM1868573 ,
GSM1868574 ,
GSM2059878 ,
GSM2059879 ,
GSM2059880 ,
GSM2059881 ,
GSM2059882 ,
GSM2059883 ,
GSM2059884 ,
GSM2059885 ,
GSM2059886 ,
GSM2059887 ,
GSM2059888 ,
GSM2059889 ,
GSM2059890 ,
GSM2059891 ,
GSM2059892 ,
GSM2059893 ,
GSM2059934 ,
GSM2059935 ,
GSM2059936 ,
GSM2059937 ,
GSM2059938 ,
GSM2059939 ,
GSM2059940 ,
GSM2059941 ,
GSM2059942 ,
GSM2059943 ,
GSM2059944 ,
GSM2059945 ,
GSM2059946 ,
GSM2059947 ,
GSM2059948 ,
GSM2059949 ,
GSM2232132 ,
GSM2232133 ,
GSM2232134 ,
GSM2232135 ,
GSM2232136 ,
GSM2232137 ,
GSM2232138 ,
GSM2232139 ,
GSM2232140 ,
GSM2516156 ,
GSM2516157 ,
GSM2516158 ,
GSM2516159 ,
GSM2516160 ,
GSM2516161 ,
GSM2516162 ,
GSM2516163 ,
GSM2516164 ,
GSM2516165 ,
GSM2516166 ,
GSM2516167 ,
GSM2516168 ,
GSM2516169 ,
GSM2516170 ,
GSM2516171 ,
GSM2516172 ,
GSM2516173 ,
GSM2516174 ,
GSM2516175 ,
GSM2516176 ,
GSM2516177 ,
GSM2516178 ,
GSM2516179 ,
GSM2516180 ,
GSM2516181 ,
GSM2516182 ,
GSM2516183 ,
GSM2636264 ,
GSM2636265 ,
GSM2636266 ,
GSM2636267 ,
GSM2636268 ,
GSM2636269 ,
GSM2636270 ,
GSM2636271 ,
GSM2636272 ,
GSM2636273 ,
GSM2636274 ,
GSM2636275 ,
GSM2691388 ,
GSM2691389 ,
GSM2691390 ,
GSM2691391 ,
GSM2691392 ,
GSM2691393 ,
GSM2691394 ,
GSM2691395 ,
GSM2691396 ,
GSM2691397 ,
GSM2752507 ,
GSM2752508 ,
GSM2809639 ,
GSM2809640 ,
GSM2809641 ,
GSM2809642 ,
GSM2809643 ,
GSM2809644 ,
GSM2809645 ,
GSM2809646 ,
GSM2809647 ,
GSM2809648 ,
GSM2809649 ,
GSM2809650 ,
GSM2809651 ,
GSM2809652 ,
GSM2809653 ,
GSM2809654 ,
GSM3423448 ,
GSM3423449 ,
GSM3423450 ,
GSM3423451 ,
GSM3423452 ,
GSM3423453 ,
GSM3423454 ,
GSM3423455 ,
GSM3423456 ,
GSM3423457 ,
GSM3423458 ,
GSM3423459 ,
GSM3423460 ,
GSM3423461 ,
GSM3423462 ,
GSM3423463 ,
GSM3423464 ,
GSM3423465 ,
GSM3423466 ,
GSM3423467 ,
GSM3423468 ,
GSM3423469 ,
GSM3431185 ,
GSM3431186 ,
GSM3431187 ,
GSM3431188 ,
GSM3431189 ,
GSM3431190 ,
GSM3431191 ,
GSM3431192 ,
GSM3431193 ,
GSM3431194 ,
GSM3431195 ,
GSM3431196 ,
GSM3431197 ,
GSM3431198 ,
GSM3431199 ,
GSM3431200 ,
GSM3431201 ,
GSM3431202 ,
GSM3431203 ,
GSM3431204 ,
GSM3431205 ,
GSM3431206 ,
GSM3438411 ,
GSM3438412 ,
GSM3438413 ,
GSM3438414 ,
GSM3438415 ,
GSM3438416 ,
GSM3438417 ,
GSM3438418 ,
GSM3438419 ,
GSM3438420 ,
GSM3438421 ,
GSM3438422 ,
GSM4039309 ,
GSM4039310 ,
GSM4039311 ,
GSM4039312 ,
GSM4039313 ,
GSM4039314 ,
GSM4039315 ,
GSM4039316 ,
GSM4039317 ,
GSM4039318 ,
GSM4039319 ,
GSM4039320 ,
GSM4617755 ,
GSM4617756 ,
GSM4617757 ,
GSM4617758 ,
GSM4617759 ,
GSM4617760 ,
GSM4617761 ,
GSM4617762 ,
GSM4617763 ,
GSM4617764 ,
GSM4617765 ,
GSM4617766 ,
GSM4617767 ,
GSM4617768 ,
GSM4617769 ,
GSM4617770 ,
GSM4617771 ,
GSM4617772 ,
GSM4617773 ,
GSM4617774 ,
GSM4617775 ,
GSM4617776 ,
GSM4617777 ,
GSM4617778 ,
GSM4764649 ,
GSM4764650 ,
GSM4818499 ,
GSM4818500 ,
GSM4818501 ,
GSM4818502 ,
GSM4818503 ,
GSM4818504 ,
GSM4818505 ,
GSM4818506 ,
GSM4818507 ,
GSM4818508 ,
GSM4886576 ,
GSM4886577 ,
GSM4886578 ,
GSM4886579 ,
GSM4886580 ,
GSM4886581 ,
GSM4886582 ,
GSM4886583 ,
GSM4886584 ,
GSM4886585 ,
GSM4886586 ,
GSM4886587 ,
GSM4886588 ,
GSM4886589 ,
GSM4886590 ,
GSM4886591 ,
GSM4886592 ,
GSM4886593 ,
GSM4886594 ,
GSM4886595 ,
GSM4886596 ,
GSM4886597 ,
GSM4886598 ,
GSM4886599 ,
GSM4886600 ,
GSM4886601 ,
GSM4886602 ,
GSM4886603 ,
GSM4886604 ,
GSM4886605 ,
GSM4886606 ,
GSM4886607 ,
GSM4886608 ,
GSM4886609 ,
GSM4886610 ,
GSM4886611 ,
GSM4886612 ,
GSM4886613 ,
GSM4886614 ,
GSM4886615 ,
GSM4886616 ,
GSM4886617 ,
GSM4886618 ,
GSM4886619 ,
GSM4974249 ,
GSM4974250 ,
GSM4974251 ,
GSM4974252 ,
GSM5091985 ,
GSM5091986 ,
GSM5091987 ,
GSM5091988 ,
GSM5091989 ,
GSM5091990 ,
GSM5091991 ,
GSM5091992 ,
GSM5091993 ,
GSM5091994 ,
GSM5091995 ,
GSM5091996 ,
GSM6134907 ,
GSM6134908 ,
GSM6134909 ,
GSM6134910 ,
GSM6134911 ,
GSM6134912 ,
GSM6134913 ,
GSM6134914 ,
GSM6134915 ,
GSM6134916 ,
GSM6134917 ,
GSM6134918 ,
GSM6134919 ,
GSM6134920 ,
GSM6214046 ,
GSM6214047 ,
GSM6214048 ,
GSM6214049 ,
GSM6214050 ,
GSM6214051 ,
GSM6214052 ,
GSM6214053 ,
GSM6214054 ,
GSM6214055 ,
GSM6214056 ,
GSM6214057 ,
GSM6214058 Series (28)
GSE66669 Plasmodium falciparum whole-genome real-time transcription and decay
GSE72695 Capturing the dynamic RNA landscape of the malaria parasite P. falciparum
GSE77807 PfAP2-I-GFP-msp5MUT vs PfAP2-I-GFP 3D7 [timecourse 1]
GSE77809 PfAP2-I-GFP-msp5MUT vs PfAP2-I-GFP 3D7 [timecourse 2]
GSE77810 PfAP2-I-GFP-msp5MUT vs PfAP2-I-GFP 3D7
GSE84342 Plasmodium falciparum blood stage parasites: control vs PfTRF-depleted parasites
GSE95547 Transgenic Plasmodium falciparum blood stage parasites 3D7/GDV1-GFP-DD: control (-Shield-1;3D7/GDV1-GFP-DDOFF) vs GDV1-overexpressing (+Shield-1;3D7/GDV1-GFP-DDON) parasites
GSE95548 Transgenic Plasmodium falciparum blood stage parasites F12/GDV1-GFP-DD: control (-Shield-1;F12/GDV1-GFP-DDOFF) vs GDV1-overexpressing (+Shield-1;F12/GDV1-GFP-DDON) parasites
GSE95549 Transcriptional response to conditional over-expression of GDV1 in Plasmodium falciparum 3D7 wild type and F12 mutant parasites
GSE99223 Transcriptional profiling defines histone acetylation as a regulator of gene expression during human-to-mosquito transmission of the malaria parasite Plasmodium falciparum
GSE100692 Global transcriptomic changes of Plasmodium falciparum asexual parasites and late gametocytes after treatment with MMV390048 or MMV642943
GSE103012 A seven-helix protein acts as a key regulator of translation during human-to-mosquito transmission of Plasmodium falciparum
GSE104889 PFNF54-Pfs16-GFP-LUC gametocyte time course from commitment to maturity
GSE120990 PfAP2-G DD +Shld1 vs. -Shld1 expression timecourse
GSE121312 PfAP2-G target gene promoter mutants expression timecourse
GSE121505 The high resolution transcriptome of Plasmodium falciparum gametocytes
GSE125566 Regulation of sexual differentiation is linked to invasion in malaria parasites
GSE136008 The G9a histone methyltransferase inhibitor BIX-01294 modulates gene expression during gametocyte development and transmission
GSE152536 Whole genome transcriptome profiling of P. falciparum sexually comitted ring stage parasite from malaria patient's peripheral blood
GSE157420 Global transcriptomic changes in P. falciparum NF54 gametocytes treated with the histone demethylase inhibitor ML324
GSE159061 Transgenic Plasmodium falciparum parasites line 3D7/DDGFP-PfAP2-HC: transcriptional differences between 3D7/DDGFP-PfAP2-HC control parasites (cultured in presence of Shield-1; ON) vs PfAP2-HC-depleted parasites (cultured in absence of Shield-1; OFF)
GSE160923 Plasmodium falciparum PfAP2-G2 KO asexual microarray timecourse
GSE160924 Plasmodium falciparum PfAP2-G2 KO gametocyte microarray timecourse
GSE160937 The PfAP2-G2 transcription factor is a critical regulator of gametocyte maturation
GSE163189 Global transcriptional response of P. falciparum NF54 early gametocytes treated with the Jumonji histone demethylase inhibitor JIB-04
GSE167068 PFNF54-Pfs16-GFP-LUC gametocytes treated at early stage or late stage development with compound MMV666810 or MMV674850
GSE202876 Identification of antimalarial compounds that inhibit Apicomplexan AP2 transcription factor proteins in the human malaria parasite Plasmodium falciparum
GSE205515 Piperaquine-resistant PfCRT mutations differentially impact drug transport, hemoglobin catabolism and parasite physiology in Plasmodium falciparum asexual blood stages
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
ORF ORF Name
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING ORF CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID 1
96
164
GE_BrightCorner
pos
control
2
96
162
DarkCorner
pos
control
3
96
160
DarkCorner
pos
control
4
96
158
PFL0815W_v7.1_P1/3
FALSE
PFL0815w
PFL0815w unmapped
DNA-binding chaperone, putative
TGAGTGGATGTAATTTAATATGGTTAGATAAAGCAACCAAAAAGAGGAGCAAGGATATAT
PFL0815W_v7.1_P1/3
5
96
156
PFB0495W_v7.1_P3/4
FALSE
PFB0495w
PFB0495w unmapped
conserved Plasmodium protein, unknown function
GAAAGTTTACAGAGTGAGTTTGAAAAAGTAACAAAAACTAGTAAAAAGGGAGGTATACAT
PFB0495W_v7.1_P3/4
6
96
154
PF13_0050_v7.1_P1/4
FALSE
PF13_0050
PF13_0050 unmapped
HORMA domain protein, putative
AAACAAATGAATATCCACCTGAAAACAACCTTCTATTAAACAGTAACGATATATACCCTC
PF13_0050_v7.1_P1/4
7
96
152
PF14_0416_v7.1_P1/2
FALSE
PF14_0416
PF14_0416 unmapped
zinc finger protein, putative
AAAAAAGATAGTTTAGCAAAAAACAAATATACTGGGTTATATGGACCTGTACGTAGTAGT
PF14_0416_v7.1_P1/2
8
96
150
PF11_0120_v7.1_P1/1
FALSE
PF11_0120
PF11_0120 unmapped
conserved Plasmodium protein, unknown function
CGAATTATCATGGCCTTGAAAAATCATTAAGAAGACGAGGAGGTAAGATAAAAACTATTT
PF11_0120_v7.1_P1/1
9
96
148
PFI1280C_v7.1_P5/9
FALSE
PFI1280c
PFI1280c unmapped
protein kinase, putative
CTTGTTGATTGTAACAACAGATCATTGATGAATAAAAATGTAATGGATTTTGCACATATG
PFI1280C_v7.1_P5/9
10
96
146
MAL8P1.65_v7.1_P4/4
FALSE
MAL8P1.65
MAL8P1.65 unmapped
DNA helicase, putative
ATTTGGCGGAAATAACGAATTGTTACAAACAGCTCTAATCAAGAACATGCATATGATTAT
MAL8P1.65_v7.1_P4/4
11
96
144
PF10_0356_v7.1_P3/4
FALSE
PF10_0356
PF10_0356 unmapped
liver stage antigen 1
AGCTAAGGAAAAGTTACAGGGGCAGCATAGCGATTTAGAACGAACGAAGGCATCTAAAGA
PF10_0356_v7.1_P3/4
12
96
142
PFD0265W_v7.1_P8/9
FALSE
PFD0265w
PFD0265w unmapped
pre-mRNA splicing factor, putative
CAAATAAAAACATCGTAACAACACAACCACATCATATATGGCCTTCGTTTAATAATAACC
PFD0265W_v7.1_P8/9
13
96
140
PF11_0123_v7.1_P2/3
FALSE
PF11_0123
PF11_0123 unmapped
conserved Plasmodium protein, unknown function
CAAAAGATTCAGAAAAAGAAGAGGGAAAAATAGTCACACATTTTATTTACAACATGTCGG
PF11_0123_v7.1_P2/3
14
96
138
PFE1170W_v7.1_P2/2
FALSE
PFE1170w
PFE1170w unmapped
DnaJ protein, putative
TCAAACCATAAAGGGAGTTTGTAAAAAGGTTTTTACTGATATGGGAGTGGATGAAAATAT
PFE1170W_v7.1_P2/2
15
96
136
PFB0080C_v7.1_P1/2
FALSE
PFB0080c
PFB0080c unmapped
Plasmodium exported protein (PHISTb), unknown function
ATGAGACTAATAGTGAGCTTAGAATACATACTATTTGGCATAATGTAATGAAGAGTGAGA
PFB0080C_v7.1_P1/2
16
96
134
PF14_0045_v7.1_P1/3
FALSE
PF14_0045
PF14_0045 unmapped
conserved Plasmodium protein, unknown function
GTAAGAATCACATCAGATATTACAAACCCAACATCCACTTTTACAAATGTGGTTGATATA
PF14_0045_v7.1_P1/3
17
96
132
PFL2245W_v7.1_P1/1
FALSE
PFL2245w
PFL2245w unmapped
signal recognition particle receptor, beta subunit
AATTTTTTAGATTTGAAAAAGCTCCTTGCCATATTGAATTGTGTAGTGCTTCTGTGAAGA
PFL2245W_v7.1_P1/1
18
96
130
PF11_0482_v7.1_P2/4
FALSE
PF11_0482
PF11_0482 unmapped
conserved Plasmodium protein, unknown function
CAGAATGACAACACAAATAATGACAGTGGAGGAAAAAAGAAATATAGGAGACTTTTGAAA
PF11_0482_v7.1_P2/4
19
96
128
PF13_0354_v7.1_P3/4
FALSE
PF13_0354
PF13_0354 unmapped
alanine--tRNA ligase, putative
GTATTAACAGAAAAGTATACGAACAGTGGAAAATCATCTAAGACGCATGAAGGAAATAAT
PF13_0354_v7.1_P3/4
20
96
126
EGFP_MUT_v7.1_P1/1
FALSE
eGFP_mut2
eGFP_mut2 unmapped
eGFP_mut2
CATTGTGTGAGTTATAGTTGTATTCCAATTTGTGTCCAAGAATGTTTCCATCTTCTTTAA
EGFP_MUT_v7.1_P1/1
15744 2804 Kbytes .Supplementary file Size Download File type/resource GPL15130_bkafsack_Pfalciparum_v7.1__GEO_037237.txt.gz
692.2 Kb
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