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Platform GPL16238 Query DataSets for GPL16238
Status Public on Jan 24, 2013
Title [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [transcript-level]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix Inc
Manufacture protocol See Manufacturers website
 
 
Submission date Nov 02, 2012
Last update date Jan 24, 2013
Contact name Jian-Liang Li
Organization name NIEHS
Street address 111 TW Alexander Dr
City Durham
State/province NC
ZIP/Postal code 27709
Country USA
 
Samples (46) GSM1030049, GSM1030050, GSM1030051, GSM1030052, GSM1030053, GSM1030054 
Series (4)
GSE41996 Transcriptomic Analysis of PNN- and ESRP1-regulation in Human Corneal Epithelial Cells
GSE55940 Human transcriptome expression analysis of cervical cancer
GSE88948 LncRNA from metastatic clear cell renal cell carcinoma (ccRCC) compared with non-metastatic clear cell renal carcinoma
Relations
Alternative to GPL16254 (exon-level)

Data table header descriptions
ID probeset_id
CHR
RANGE_GB
SPOT_ID
RANGE_START
RANGE_END
RANGE_STRAND
transcript_id
public_transcript_id
gene_id
symbol
mapLocation
description
GO_biological_process
GO_molecular_function
GO_cellular_component
unigene_id
pubmed_id
transcript_count
exon_cluster_count
exon_count
psr_count
core_probeset_count
extended_probeset_count
core_probe_cout
extended_probe_count

Data table
ID CHR RANGE_GB SPOT_ID RANGE_START RANGE_END RANGE_STRAND transcript_id public_transcript_id gene_id symbol mapLocation description GO_biological_process GO_molecular_function GO_cellular_component unigene_id pubmed_id transcript_count exon_cluster_count exon_count psr_count core_probeset_count extended_probeset_count core_probe_cout extended_probe_count
TC0100001 chr1 NC_000001.9 1116 4272 + TR01010028 /// TR01010027 chr1.1.1 /// chr1.1.0 --- --- --- --- --- --- --- --- --- 2 2 4 5 5 15 48 15"
TC0100002 chr1 NC_000001.9 20405 20972 + TR01026467 chr1.3.554 --- --- --- --- --- --- --- --- --- 1 2 2 2 1 24 1 24"
TC0100003 chr1 NC_000001.9 42912 44799 + TR01003757 ENST00000359752 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 12 6 12"
TC0100004 chr1 NC_000001.9 52878 53750 + TR01008353 ENST00000379479 --- Q5VT23_HUMAN --- Olfactory receptor, family 4, subfamily G, member 11 pseudogene. [Source:Uniprot/SPTREMBL;Acc:Q5VT23] GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA GO:0001584 // rhodopsin-like receptor activity // IEA /// GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0016020 // membrane // IEA /// GO:0016021 // integral to membrane // IEA --- --- 1 1 1 1 1 1 11 1"
TC0100005 chr1 NC_000001.9 58954 59871 + TR01001831 NM_001005484 /// ENST00000326183 79501 OR4F5 1p36.33 olfactory receptor, family 4, subfamily F, member 5 GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA /// GO:0007608 // sensory perception of smell // IEA /// GO:0050896 // response to stimulus // IEA GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0005886 // plasma membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.554500 16710414 1 1 1 1 1 5 10 5"
TC0100006 chr1 NC_000001.9 310025 314825 + TR01024688 /// TR01024687 /// TR01024686 /// TR01024685 /// TR01024684 chr1.26.726 /// chr1.26.725 /// chr1.26.724 /// chr1.26.723 /// chr1.26.722 --- --- --- --- --- --- --- --- --- 5 7 8 7 2 79 6 79"
TC0100007 chr1 NC_000001.9 319647 324159 + TR01026196 /// TR01008351 ENST00000379473 /// chr1.29.727 --- --- --- --- --- --- --- --- --- 2 2 3 3 0 26 0 26"
TC0100008 chr1 NC_000001.9 357522 358460 + TR01008487 /// TR01001865 NM_001005277 /// NM_001005224 /// NM_001005221 /// ENST00000327169 729759 /// 81399 /// 26683 OR4F29 /// OR4F16 /// OR4F3 1p36.33 /// 5q35.3 olfactory receptor, family 4, subfamily F, member 29 /// olfactory receptor, family 4, subfamily F, member 16 /// olfactory receptor, family 4, subfamily F, member 3 GO:0007165 // signal transduction // IEA /// GO:0007186 // G-protein coupled receptor protein signaling pathway // IEA /// GO:0007608 // sensory perception of smell // IEA /// GO:0050896 // response to stimulus // IEA GO:0004872 // receptor activity // IEA /// GO:0004984 // olfactory receptor activity // IEA GO:0005886 // plasma membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.712091 /// Hs.632360 /// Hs.712091 14983052 /// 16421571 /// 16710414 /// 14983052 2 1 2 1 1 12 12 12"
TC0100009 chr1 NC_000001.9 410855 411702 + TR01026780 chr1.31.728 --- --- --- --- --- --- --- --- --- 1 2 2 2 2 24 17 24"
TC0100010 chr1 NC_000001.9 554676 554744 + TR01002919 ENST00000349070 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 3 12 3"
TC0100011 chr1 NC_000001.9 554815 554882 + TR01002964 ENST00000349504 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 7 9 7"
TC0100012 chr1 NC_000001.9 555925 555992 + TR01002589 ENST00000345345 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 12 6 12"
TC0100013 chr1 NC_000001.9 557932 557999 + TR01002671 ENST00000346390 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 10 6 10"
TC0100014 chr1 NC_000001.9 558707 558776 + TR01002847 ENST00000348304 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 12 3 12"
TC0100015 chr1 NC_000001.9 711269 711775 + TR01003656 ENST00000358533 --- --- --- --- --- --- --- --- --- 1 1 1 1 1 4 8 4"
TC0100016 chr1 NC_000001.9 742614 745077 + TR01001851 ENST00000326734 --- FA87B_HUMAN --- Protein FAM87B. [Source:Uniprot/SWISSPROT;Acc:Q8N852] --- --- GO:0016020 // membrane // IEA /// GO:0016021 // integral to membrane // IEA Hs.568078 /// Hs.690906 --- 1 2 2 2 2 3 17 3"
TC0100017 chr1 NC_000001.9 752910 779045 + TR01028654 /// TR01028653 /// TR01028652 /// TR01028651 /// TR01028650 /// TR01028649 /// TR01028648 /// TR01028647 /// TR01028646 /// TR01028645 /// TR01028644 /// TR01028643 /// TR01028642 /// TR01028641 /// TR01028640 chr1.43.743 /// chr1.43.742 /// chr1.43.741 /// chr1.43.740 /// chr1.43.739 /// chr1.43.738 /// chr1.43.737 /// chr1.43.736 /// chr1.43.735 /// chr1.43.734 /// chr1.43.733 /// chr1.43.732 /// chr1.43.731 /// chr1.43.730 /// chr1.43.729 --- --- --- --- --- --- --- --- --- 15 8 9 9 9 8 98 9"
TC0100018 chr1 NC_000001.9 781254 783614 + TR01001847 ENST00000326678 --- Q96BN7_HUMAN --- --- --- --- --- Hs.598729 --- 1 1 1 1 1 0 20 0"
TC0100019 chr1 NC_000001.9 850393 870375 + TR01028871 /// TR01028870 /// TR01028869 /// TR01009744 /// TR01002412 /// TR01002359 NM_152486 /// ENST00000342066 /// ENST00000341065 /// chr1.48.749 /// chr1.48.748 /// chr1.48.747 /// chr1.48.746 148398 SAMD11 1p36.33 sterile alpha motif domain containing 11 /// sterile alpha motif domain containing 11 [Source:RefSeq_peptide;Acc:NP_689699] --- GO:0005488 // binding // IEA GO:0005634 // nucleus // IEA Hs.335293 12477932 /// 14702039 /// 15146197 /// 15489334 /// 16710414 6 16 20 19 19 7 183 7"
TC0100020 chr1 NC_000001.9 885830 890962 + TR01029203 /// TR01029202 /// TR01009941 /// TR01008349 /// TR01002240 NM_198317 /// ENST00000379420 /// ENST00000338591 /// chr1.50.767 /// chr1.50.766 /// chr1.50.765 339451 KLHL17 1p36.33 kelch-like 17 (Drosophila) --- GO:0003779 // actin binding // IEA /// GO:0005515 // protein binding // IEA GO:0030054 // cell junction // IEA /// GO:0045202 // synapse // IEA /// GO:0045211 // postsynaptic membrane // IEA Hs.109212 12063253 /// 12477932 /// 16710414 5 12 17 13 13 24 110 24"

Total number of rows: 35123

Table truncated, full table size 29065 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16238_hGlue_3_0_v1.TC.mps.txt.gz 1.3 Mb (ftp)(http) TXT
GPL16238_hGlue_3_0_v1.TC_Annov.csv.gz 6.9 Mb (ftp)(http) CSV
GPL16238_hGlue_3_0_v1.TConly.mps.txt.gz 1.2 Mb (ftp)(http) TXT

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