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Platform GPL21747 Query DataSets for GPL21747
Status Public on Jan 01, 2017
Title Agilent-064096 SaMW2_exp_140130_2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Staphylococcus aureus subsp. aureus MW2
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16064096 or 2564096.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 19, 2016
Last update date Jan 01, 2017
Contact name Kentaro Oyama
Organization name Department of Oral Microbiology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan
Street address Sakuragaoka 8-35-1
City Kagoshima City
ZIP/Postal code 890-8544
Country Japan
 
Samples (7) GSM2128749, GSM2128750, GSM2128751, GSM2128752, GSM3770935, GSM3770936 
Series (2)
GSE80500 Effect of Glycyrrhetinic acid and its derivatives on antibacterial activity and virulence against Staphylococcus aureus
GSE131352 Sa MW2 vs SAN2

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Locus tag
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner pos
2 96 162 DarkCorner pos
3 96 160 DarkCorner pos
4 96 158 psma_tiling_029_F FALSE unmapped TTGATGTGAGGTGAGTCTTGTTAGTTTGTTGCAAATAAATGGTCTTGGTTTTTTGTATAG
5 96 156 MW2_CDS_10197 MW1922 FALSE unmapped TCCTGTATGTTACTGATACGAAGTATCTGAAATACAAATTTAACGGCATTACACACATGA
6 96 154 MW2_CDS_03839 MW0702 FALSE unmapped TGAAGTAAAAGGCGCGATTAAAAATCACATTATGCCAATGATTGAAAAGCAAATTACCGA
7 96 152 MW2_CDS_13720 MW2591 FALSE unmapped TGGTGAAGAAGCTTTTGAAGTCGTAATTGAAGCAATTAAAGGTGACAAAAAAGCATTTGT
8 96 150 MW2_CDS_05374 MW0996 FALSE unmapped GGAAGTCAAACGTTTGTAAACATTGGCGGTATTTCGGCAACAATTCCATTAACTGGTGTG
9 96 148 MW2_CDS_01886 MW0345 FALSE unmapped AGAGACCTTTAAATGAAAACCAAGTTCGTATAAATTTAGAAGGAACATACAGAGTTGCTG
10 96 146 MW2_CDS_06979 MW1303 FALSE unmapped ATTCTACAGATGTGGCCAAAGGTTATGATGTGCCAATATTCCATGTCAATGCAGATGACG
11 96 144 MW2_CDS_04525 MW0836 FALSE unmapped TGATGGAATAACATTCCACCGTGTCATTAATGACTTCATGATTCAAGGTGGCGATCCAAC
12 96 142 MW2_CDS_03712 MW0680 FALSE unmapped TGTGGGAGGCGGATTTGAATTAGATGCATGGTTAGGATCTAACTCAACCGACTTTAATGT
13 96 140 MW2_CDS_06098 MW1133 FALSE unmapped GCGTAATCCAGCAAACCCATTTACAACTTCTACATTACAACAAGAGGCGGCACGTAAATT
14 96 138 MW2_CDS_03609 MW0661 FALSE unmapped GTACTGCCACGGCATTTGATGAGGACTTAGCAACACGGGACGCTATAGAAAAAATAAAAT
15 96 136 MW2_CDS_03790 MW0693 FALSE unmapped TGACATGGTTGCAAACCCAAATGTTGAGAAAAAGAAAAAGAATGCGCGTGAAATGTTGAA
16 96 134 MW2_CDS_12256 MW2319 FALSE unmapped AAGAAGCCATTTCAGGCGTAAAACAAAGTGTTGTCATTCAAGTAGCGAAAGAATTTGCGC
17 96 132 MW2_CDS_03026 MW0556 FALSE unmapped TGCTATGCGAATCTAAAATCATCAATAAAAACCCCCAATATAGAATTATTAAATATAATG
18 96 130 MW2_CDS_02203 MW0407 FALSE unmapped TTTGGTAGTTTATTAAGTATTTGGGTGGCGCGTCATCGATACTCTAAGGGTTTTGCGGTA
19 96 128 agr_tiling 209_R FALSE unmapped ACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAA
20 96 126 MW2_CDS_12059 MW2284 FALSE unmapped GCCAAATGGACTTATACGTATGTATCTTAAAGATGCACACTACACCTATTCTTCTAGACG

Total number of rows: 15744

Table truncated, full table size 1613 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL21747_064096_D_GEO_20140130.txt.gz 491.6 Kb (ftp)(http) TXT
GPL21747_MW2_CDS_Probe_MINIMAL.XLS.gz 501.9 Kb (ftp)(http) XLS

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