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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 05, 2024 |
| Title |
Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
Epigenetic treatment induces TE-chimeric antigens in glioblastoma stem cells
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| |
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| Overall design |
Methylation profiling by high throughput sequencing
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| |
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| Contributor(s) |
Jang HJ, Maeng JH, Xing X, Wang T |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Mar 09, 2023 |
| Last update date |
Jun 06, 2024 |
| Contact name |
Daofeng Li |
| E-mail(s) |
lidaof@gmail.com
|
| Phone |
(314) 286-0866
|
| Organization name |
Washington University in St. Louis
|
| Department |
Genetics
|
| Lab |
Ting Wang Lab
|
| Street address |
4515 McKinley Avenue
|
| City |
SAINT LOUIS |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (112)
|
| GSM7090808 |
B36 cells, WGBS, DMSO, BR2 |
| GSM7090809 |
B49 cells, WGBS, DACPano, BR1 |
| GSM7090810 |
B49 cells, WGBS, DACPano, BR2 |
| GSM7090811 |
B49 cells, WGBS, DMSO, BR1 |
| GSM7090812 |
B49 cells, WGBS, DMSO, BR2 |
| GSM7090813 |
B66 cells, WGBS, DACPano, BR1 |
| GSM7090814 |
B66 cells, WGBS, DACPano, BR2 |
| GSM7090815 |
B66 cells, WGBS, DMSO, BR1 |
| GSM7090816 |
B66 cells, WGBS, DMSO, BR2 |
| GSM7090817 |
hFB cells, WGBS, DACPano, BR1 |
| GSM7090818 |
hFB cells, WGBS, DACPano, BR2 |
| GSM7090819 |
hFB cells, WGBS, DMSO, BR1 |
| GSM7090820 |
hFB cells, WGBS, DMSO, BR2 |
| GSM7090821 |
NHA cells, WGBS, DACPano, BR1 |
| GSM7090822 |
NHA cells, WGBS, DACPano, BR2 |
| GSM7090823 |
NHA cells, WGBS, DMSO, BR1 |
| GSM7090824 |
NHA cells, WGBS, DMSO, BR2 |
| GSM7090825 |
qhFB cells, WGBS, DACPano, BR1 |
| GSM7090826 |
qhFB cells, WGBS, DACPano, BR2 |
| GSM7090827 |
qhFB cells, WGBS, DMSO, BR1 |
| GSM7090828 |
qhFB cells, WGBS, DMSO, BR2 |
| GSM7090829 |
qNHA cells, WGBS, DACPano, BR1 |
| GSM7090830 |
qNHA cells, WGBS, DACPano, BR2 |
| GSM7090831 |
qNHA cells, WGBS, DMSO, BR1 |
| GSM7090832 |
qNHA cells, WGBS, DMSO, BR2 |
| GSM7090833 |
B36 cells, ATAC, DACPano, BR1 |
| GSM7090834 |
B36 cells, ATAC, DACPano, BR2 |
| GSM7090835 |
B36 cells, ATAC, DMSO, BR1 |
| GSM7090836 |
B36 cells, ATAC, DMSO, BR2 |
| GSM7090837 |
B49 cells, ATAC, DACPano, BR1 |
| GSM7090838 |
B49 cells, ATAC, DACPano, BR2 |
| GSM7090839 |
B49 cells, ATAC, DMSO, BR1 |
| GSM7090840 |
B49 cells, ATAC, DMSO, BR2 |
| GSM7090841 |
B66 cells, ATAC, DACPano, BR1 |
| GSM7090842 |
B66 cells, ATAC, DACPano, BR2 |
| GSM7090843 |
B66 cells, ATAC, DMSO, BR1 |
| GSM7090844 |
B66 cells, ATAC, DMSO, BR2 |
| GSM7090845 |
hFB cells, ATAC, DACPano, BR1 |
| GSM7090846 |
hFB cells, ATAC, DACPano, BR2 |
| GSM7090847 |
hFB cells, ATAC, DMSO, BR1 |
| GSM7090848 |
hFB cells, ATAC, DMSO, BR2 |
| GSM7090849 |
NHA cells, ATAC, DACPano, BR1 |
| GSM7090850 |
NHA cells, ATAC, DACPano, BR2 |
| GSM7090851 |
NHA cells, ATAC, DMSO, BR1 |
| GSM7090852 |
NHA cells, ATAC, DMSO, BR2 |
| GSM7090853 |
qhFB cells, ATAC, DACPano, BR1 |
| GSM7090854 |
qhFB cells, ATAC, DACPano, BR2 |
| GSM7090855 |
qhFB cells, ATAC, DMSO, BR1 |
| GSM7090856 |
qhFB cells, ATAC, DMSO, BR2 |
| GSM7090857 |
qNHA cells, ATAC, DACPano, BR1 |
| GSM7090858 |
qNHA cells, ATAC, DACPano, BR2 |
| GSM7090859 |
qNHA cells, ATAC, DMSO, BR1 |
| GSM7090860 |
qNHA cells, ATAC, DMSO, BR2 |
| GSM7090861 |
B36 cells, nanoCAGE, DACPano, BR1 |
| GSM7090862 |
B36 cells, nanoCAGE, DACPano, BR2 |
| GSM7090863 |
B36 cells, nanoCAGE, DMSO, BR1 |
| GSM7090864 |
B36 cells, nanoCAGE, DMSO, BR2 |
| GSM7090865 |
B49 cells, nanoCAGE, DACPano, BR1 |
| GSM7090866 |
B49 cells, nanoCAGE, DACPano, BR2 |
| GSM7090867 |
B49 cells, nanoCAGE, DMSO, BR1 |
| GSM7090868 |
B49 cells, nanoCAGE, DMSO, BR2 |
| GSM7090869 |
B66 cells, nanoCAGE, DACPano, BR1 |
| GSM7090870 |
B66 cells, nanoCAGE, DACPano, BR2 |
| GSM7090871 |
B66 cells, nanoCAGE, DMSO, BR1 |
| GSM7090872 |
B66 cells, nanoCAGE, DMSO, BR2 |
| GSM7090873 |
hFB cells, nanoCAGE, DACPano, BR1 |
| GSM7090874 |
hFB cells, nanoCAGE, DACPano, BR2 |
| GSM7090875 |
hFB cells, nanoCAGE, DMSO, BR1 |
| GSM7090876 |
hFB cells, nanoCAGE, DMSO, BR2 |
| GSM7090877 |
NHA cells, nanoCAGE, DACPano, BR1 |
| GSM7090878 |
NHA cells, nanoCAGE, DACPano, BR2 |
| GSM7090879 |
NHA cells, nanoCAGE, DMSO, BR1 |
| GSM7090880 |
NHA cells, nanoCAGE, DMSO, BR2 |
| GSM7090881 |
qhFB cells, nanoCAGE, DACPano, BR1 |
| GSM7090882 |
qhFB cells, nanoCAGE, DACPano, BR2 |
| GSM7090883 |
qhFB cells, nanoCAGE, DMSO, BR1 |
| GSM7090884 |
qhFB cells, nanoCAGE, DMSO, BR2 |
| GSM7090885 |
qNHA cells, nanoCAGE, DACPano, BR1 |
| GSM7090886 |
qNHA cells, nanoCAGE, DACPano, BR2 |
| GSM7090887 |
qNHA cells, nanoCAGE, DMSO, BR1 |
| GSM7090888 |
qNHA cells, nanoCAGE, DMSO, BR2 |
| GSM7090889 |
B36 cells, mRNA-seq, DACPano, BR1 |
| GSM7090890 |
B36 cells, mRNA-seq, DACPano, BR2 |
| GSM7090891 |
B36 cells, mRNA-seq, DMSO, BR1 |
| GSM7090892 |
B36 cells, mRNA-seq, DMSO, BR2 |
| GSM7090893 |
B49 cells, mRNA-seq, DACPano, BR1 |
| GSM7090894 |
B49 cells, mRNA-seq, DACPano, BR2 |
| GSM7090895 |
B49 cells, mRNA-seq, DMSO, BR1 |
| GSM7090896 |
B49 cells, mRNA-seq, DMSO, BR2 |
| GSM7090897 |
B66 cells, mRNA-seq, DACPano, BR1 |
| GSM7090898 |
B66 cells, mRNA-seq, DACPano, BR2 |
| GSM7090899 |
B66 cells, mRNA-seq, DMSO, BR1 |
| GSM7090900 |
B66 cells, mRNA-seq, DMSO, BR2 |
| GSM7090901 |
hFB cells, mRNA-seq, DACPano, BR1 |
| GSM7090902 |
hFB cells, mRNA-seq, DACPano, BR2 |
| GSM7090903 |
hFB cells, mRNA-seq, DMSO, BR1 |
| GSM7090904 |
hFB cells, mRNA-seq, DMSO, BR2 |
| GSM7090905 |
NHA cells, mRNA-seq, DACPano, BR1 |
| GSM7090906 |
NHA cells, mRNA-seq, DACPano, BR2 |
| GSM7090907 |
NHA cells, mRNA-seq, DMSO, BR1 |
| GSM7090908 |
NHA cells, mRNA-seq, DMSO, BR2 |
| GSM7090909 |
qhFB cells, mRNA-seq, DACPano, BR1 |
| GSM7090910 |
qhFB cells, mRNA-seq, DACPano, BR2 |
| GSM7090911 |
qhFB cells, mRNA-seq, DMSO, BR1 |
| GSM7090912 |
qhFB cells, mRNA-seq, DMSO, BR2 |
| GSM7090913 |
qNHA cells, mRNA-seq, DACPano, BR1 |
| GSM7090914 |
qNHA cells, mRNA-seq, DACPano, BR2 |
| GSM7090915 |
qNHA cells, mRNA-seq, DMSO, BR1 |
| GSM7090916 |
qNHA cells, mRNA-seq, DMSO, BR2 |
|
| Relations |
| BioProject |
PRJNA942972 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE227059_RAW.tar |
14.2 Gb |
(http)(custom) |
TAR (of BED, BEDGRAPH, BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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