Search Toolkit Book for CApplyRNAITSDlg

#include <gui/packages/pkg_sequence_edit/apply_rna_its_dlg.hpp>

Inheritance diagram for CApplyRNAITSDlg:

Collaboration diagram for CApplyRNAITSDlg:

Classes
struct	SRNAITSChoice

Public Types
enum	ERNA_ITSType { eRNA_ITS_unknown , eRNA_ITS_18S , eRNA_ITS_small , eRNA_ITS_18S_small , eRNA_ITS_Its1 , eRNA_ITS_58S , eRNA_ITS_Its2 , eRNA_ITS_28S , eRNA_ITS_26S , eRNA_ITS_25S , eRNA_ITS_large , eRNA_ITS_28S_large , eRNA_ITS_26S_large , eRNA_ITS_25S_large }

enum	ERNA_IGSType { eRNA_IGS_unknown , eRNA_IGS_16S , eRNA_IGS_16S_23S_Igs , eRNA_IGS_23S }

enum	EChoiceSet { eChoice_empty , eChoice_not_empty }

typedef vector< CConstRef< CSeq_feat > >	TVecConstSeqFeat

typedef vector< CRef< CSeq_feat > >	TVecSeqFeat

typedef vector< CConstRef< CSeq_id > >	TVecConstSeqId

Public Member Functions
	CApplyRNAITSDlg ()
	Constructors. More...

	CApplyRNAITSDlg (wxWindow parent, IWorkbench wb, wxWindowID id=10307, const wxString &caption=_("Apply rRNA_ITS"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL)

bool	Create (wxWindow *parent, wxWindowID id=10307, const wxString &caption=_("Apply rRNA_ITS"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL)
	Creation. More...

	~CApplyRNAITSDlg ()
	Destructor. More...

void	Init ()
	Initialises member variables. More...

void	CreateControls ()
	Creates the controls and sizers. More...

wxBitmap	GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...

wxIcon	GetIconResource (const wxString &name)
	Retrieves icon resources. More...

ERNA_ITSType	GetNextRNA_ITSChoice (ERNA_ITSType field_type)

ERNA_IGSType	GetNextRNA_IGSChoice (ERNA_IGSType field_type)

void	OnFirstChoiceSelected (wxCommandEvent &event)

void	OnAnyOtherChoiceSelected (wxCommandEvent &event)

void	OnITSRadioBoxSelected (wxCommandEvent &event)

void	OnCtrlFromKillFocus (wxFocusEvent &event)

void	OnCtrlToKillFocus (wxFocusEvent &event)

void	OnCloseWindow (wxCloseEvent &event)

void	OnGoClick (wxCommandEvent &event)

void	OnCancelClick (wxCommandEvent &event)

virtual CRef< CCmdComposite >	GetCommand ()
	CBulkCmdDlg pure virtual functions. More...

virtual string	GetErrorMessage ()

virtual void	SetRegistryPath (const string &reg_path)

virtual void	LoadSettings ()

virtual void	SaveSettings () const

void	Apply_RNAITS_ToBioseq (const CBioseq_Handle &bsh, CRef< CCmdComposite > composite, bool &modified, bool create_general_only)

void	Apply_RNAITS_ToBioseqSet (CSeq_entry_Handle entry, CRef< CCmdComposite > composite, bool &modified)

void	Apply_RNAITS_ToTSE (CRef< CCmdComposite > composite, bool &modified)

void	AddFeatures (const CBioseq_Handle &bsh, TVecConstSeqFeat &featlist, CRef< CCmdComposite > composite, bool &modified)

void	Propagate_RNAITSList (const CBioseq_Handle &bsh, TVecConstSeqFeat &featlist, CRef< CCmdComposite > composite, bool &modified, bool create_general_only)

TVecConstSeqFeat	GetRNAITSList_SeqCoordFromDlg (const CBioseq_Handle &bsh)

TVecConstSeqFeat	GetRNAITSList_AlignCoordFromDlg (const CBioseq_Handle &bsh)

TVecConstSeqFeat	ObtainRNAITSList (const CBioseq_Handle &bsh)

Public Member Functions inherited from CBulkCmdDlg
	CBulkCmdDlg ()
	Constructors. More...

	CBulkCmdDlg (IWorkbench *wb)

bool	Create (wxWindow *parent, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

bool	Create (wxWindow parent, IWorkbench wb, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

	~CBulkCmdDlg ()
	Destructor. More...

virtual void	OnChildChange (wxWindow *wnd)

virtual void	ExecuteCmd (CRef< CCmdComposite > cmd)

bool	GetTopLevelSeqEntryAndProcessor ()

TConstScopedObjects	GetSelectedObjects ()

void	UpdateChildrenFeaturePanels (wxSizer *sizer)

void	onCancelPressed (wxCommandEvent &event)

Public Member Functions inherited from IRegSettings
virtual	~IRegSettings ()

Static Public Member Functions
static bool	ShowToolTips ()
	Should we show tooltips? More...

static const string &	GetRNA_ITSName (ERNA_ITSType field_type)

static const string &	GetRNA_IGSName (ERNA_IGSType field_type)

static ERNA_ITSType	GetRNA_ITSTypeFromName (const string &label)

static ERNA_IGSType	GetRNA_IGSTypeFromName (const string &label)

Public Attributes
wxCheckBox *	m_5partial

wxCheckBox *	m_3partial

wxCheckBox *	m_AlignCoords

wxRadioBox *	m_ITSRadiobox

wxCheckBox *	m_LeaveUp

wxButton *	m_OK

wxButton *	m_Cancel

Private Member Functions
void	x_Set_ITSArray (wxArrayString &Its_tags)

void	x_Set_IGSArray (wxArrayString &Igs_tags)

TVecConstSeqFeat	x_UpdatePartials (TVecSeqFeat &featlist)
	if required, sets the first and last features incomplete More...

void	x_SetupAlnMgr (void)

bool	x_IsThereAlignment (void)

IAlnExplorer::TNumrow	x_GetRow (const CBioseq &bioseq)

SIZE_TYPE	x_BioseqInAlignments (const CBioseq_Handle &bsh)
	returns the number of dense-seg type alignment which the bioseq belongs to More...

vector< CConstRef< CSeq_align > >	x_GetAlignments (const CBioseq_Handle &bsh)
	obtains all dense-seg type alignments where this bioseq is present, in this seq-entry More...

TVecConstSeqId	x_SeqIdsAlignedWith (const CBioseq_Handle &bsh, const CSeq_align &align)
	obtains a vector of seqIds aligned with bsh through the given alignment - used for feature propagation More...

bool	x_WasPropagatedTo (const CBioseq_Handle &bsh)
	returns true if features were already propagated to the sequence More...

void	x_SaveAndDestroyFrame ()

Private Attributes
vector< SRNAITSChoice >	m_ChoiceList

int	m_Choice

string	m_RegPath

CRef< CAlnMap >	m_Alnmap

TVecConstSeqId	m_PropSeqids

Additional Inherited Members
Protected Member Functions inherited from CBulkCmdDlg
edit::EExistingText	x_GetExistingTextHandling (int num_conflicts, bool allow_multiple=false)

Protected Attributes inherited from CBulkCmdDlg
IWorkbench *	m_Workbench

ICommandProccessor *	m_CmdProccessor

objects::CSeq_entry_Handle	m_TopSeqEntry

CConstRef< objects::CSeq_submit >	m_SeqSubmit

string	m_ErrorMessage

Detailed Description

CApplyRNAITSDlg class declaration

Definition at line 84 of file apply_rna_its_dlg.hpp.

Member Typedef Documentation

◆ TVecConstSeqFeat

typedef vector<CConstRef<CSeq_feat> > CApplyRNAITSDlg::TVecConstSeqFeat

Definition at line 115 of file apply_rna_its_dlg.hpp.

◆ TVecConstSeqId

typedef vector<CConstRef<CSeq_id> > CApplyRNAITSDlg::TVecConstSeqId

Definition at line 117 of file apply_rna_its_dlg.hpp.

◆ TVecSeqFeat

typedef vector<CRef<CSeq_feat> > CApplyRNAITSDlg::TVecSeqFeat

Definition at line 116 of file apply_rna_its_dlg.hpp.

Member Enumeration Documentation

◆ EChoiceSet

enum CApplyRNAITSDlg::EChoiceSet

Enumerator
eChoice_empty
eChoice_not_empty

Definition at line 143 of file apply_rna_its_dlg.hpp.

◆ ERNA_IGSType

enum CApplyRNAITSDlg::ERNA_IGSType

Enumerator
eRNA_IGS_unknown
eRNA_IGS_16S
eRNA_IGS_16S_23S_Igs
eRNA_IGS_23S

Definition at line 136 of file apply_rna_its_dlg.hpp.

◆ ERNA_ITSType

enum CApplyRNAITSDlg::ERNA_ITSType

Enumerator
eRNA_ITS_unknown
eRNA_ITS_18S
eRNA_ITS_small
eRNA_ITS_18S_small
eRNA_ITS_Its1
eRNA_ITS_58S
eRNA_ITS_Its2
eRNA_ITS_28S
eRNA_ITS_26S
eRNA_ITS_25S
eRNA_ITS_large
eRNA_ITS_28S_large
eRNA_ITS_26S_large
eRNA_ITS_25S_large

Definition at line 119 of file apply_rna_its_dlg.hpp.

Constructor & Destructor Documentation

◆ CApplyRNAITSDlg() [1/2]

CApplyRNAITSDlg::CApplyRNAITSDlg ( )

Constructors.

Definition at line 149 of file apply_rna_its_dlg.cpp.

References Init().

◆ CApplyRNAITSDlg() [2/2]

CApplyRNAITSDlg::CApplyRNAITSDlg	(	wxWindow *	parent,
		IWorkbench *	wb,
		wxWindowID	id = `10307`,
		const wxString &	caption = `_("Apply rRNA_ITS")`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(400, 300)`,
		long	style = `wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL`
	)

Definition at line 154 of file apply_rna_its_dlg.cpp.

References Create(), Init(), NEditingStats::ReportUsage(), and ncbi::grid::netcache::search::fields::size.

◆ ~CApplyRNAITSDlg()

CApplyRNAITSDlg::~CApplyRNAITSDlg ( )

Destructor.

Definition at line 180 of file apply_rna_its_dlg.cpp.

Member Function Documentation

◆ AddFeatures()

void CApplyRNAITSDlg::AddFeatures	(	const CBioseq_Handle &	bsh,
		TVecConstSeqFeat &	featlist,
		CRef< CCmdComposite >	composite,
		bool &	modified
	)

Definition at line 868 of file apply_rna_its_dlg.cpp.

References CCmdComposite::AddCommand(), and CBioseq_Handle::GetSeq_entry_Handle().

Referenced by Apply_RNAITS_ToBioseq(), Apply_RNAITS_ToBioseqSet(), and Apply_RNAITS_ToTSE().

◆ Apply_RNAITS_ToBioseq()

void CApplyRNAITSDlg::Apply_RNAITS_ToBioseq	(	const CBioseq_Handle &	bsh,
		CRef< CCmdComposite >	composite,
		bool &	modified,
		bool	create_general_only
	)

Definition at line 890 of file apply_rna_its_dlg.cpp.

References AddFeatures(), GetRNAITSList_SeqCoordFromDlg(), m_AlignCoords, CBulkCmdDlg::m_ErrorMessage, ObtainRNAITSList(), Propagate_RNAITSList(), ToWxString(), and x_BioseqInAlignments().

Referenced by GetCommand().

◆ Apply_RNAITS_ToBioseqSet()

void CApplyRNAITSDlg::Apply_RNAITS_ToBioseqSet	(	CSeq_entry_Handle	entry,
		CRef< CCmdComposite >	composite,
		bool &	modified
	)

Definition at line 929 of file apply_rna_its_dlg.cpp.

References AddFeatures(), CSeq_inst_Base::eMol_na, CSeq_entry_Handle::IsSeq(), and ObtainRNAITSList().

Referenced by GetCommand().

◆ Apply_RNAITS_ToTSE()

void CApplyRNAITSDlg::Apply_RNAITS_ToTSE	(	CRef< CCmdComposite >	composite,
		bool &	modified
	)

Definition at line 940 of file apply_rna_its_dlg.cpp.

References AddFeatures(), CSeq_inst_Base::eMol_na, CBulkCmdDlg::m_TopSeqEntry, ObtainRNAITSList(), and ToWxString().

Referenced by GetCommand().

◆ Create()

bool CApplyRNAITSDlg::Create	(	wxWindow *	parent,
		wxWindowID	id = `10307`,
		const wxString &	caption = `_("Apply rRNA_ITS")`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(400, 300)`,
		long	style = `wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL`
	)

Creation.

Definition at line 164 of file apply_rna_its_dlg.cpp.

References CBulkCmdDlg::Create(), CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CApplyRNAITSDlg().

◆ CreateControls()

void CApplyRNAITSDlg::CreateControls ( )

Creates the controls and sizers.

Definition at line 198 of file apply_rna_its_dlg.cpp.

References _, eChoice_empty, CApplyRNAITSDlg::SRNAITSChoice::from, CBulkCmdDlg::GetTopLevelSeqEntryAndProcessor(), ID_APPLY, ID_CHECKBOX7, ID_CHECKBOX8, ID_CHECKBOX9, ID_CHOICE_FIFTH, ID_CHOICE_FIRST, ID_CHOICE_FOURTH, ID_CHOICE_SECOND, ID_CHOICE_THIRD, ID_CLOSEBTN, ID_LEAVE_DIALOG_UP, ID_RADIOBOX_ITS_IGS, ID_TEXTCTRL_FFROM, ID_TEXTCTRL_FIFROM, ID_TEXTCTRL_FITO, ID_TEXTCTRL_FOFROM, ID_TEXTCTRL_FOTO, ID_TEXTCTRL_FTO, ID_TEXTCTRL_SFROM, ID_TEXTCTRL_STO, ID_TEXTCTRL_TFROM, ID_TEXTCTRL_TTO, m_3partial, m_5partial, m_AlignCoords, m_Cancel, m_Choice, m_ChoiceList, m_ITSRadiobox, m_LeaveUp, m_OK, n, NULL, OnCtrlFromKillFocus(), OnCtrlToKillFocus(), CApplyRNAITSDlg::SRNAITSChoice::rnaType, CApplyRNAITSDlg::SRNAITSChoice::to, x_IsThereAlignment(), x_Set_IGSArray(), x_Set_ITSArray(), and x_SetupAlnMgr().

Referenced by Create().

◆ GetBitmapResource()

wxBitmap CApplyRNAITSDlg::GetBitmapResource ( const wxString & name )

Retrieves bitmap resources.

Get bitmap resources

Definition at line 492 of file apply_rna_its_dlg.cpp.

◆ GetCommand()

CRef< CCmdComposite > CApplyRNAITSDlg::GetCommand ( void )

virtual

◆ GetErrorMessage()

string CApplyRNAITSDlg::GetErrorMessage ( )

virtual

Implements CBulkCmdDlg.

Definition at line 766 of file apply_rna_its_dlg.cpp.

References CBulkCmdDlg::m_ErrorMessage.

Referenced by OnGoClick().

◆ GetIconResource()

wxIcon CApplyRNAITSDlg::GetIconResource ( const wxString & name )

Retrieves icon resources.

Get icon resources

Definition at line 505 of file apply_rna_its_dlg.cpp.

◆ GetNextRNA_IGSChoice()

CApplyRNAITSDlg::ERNA_IGSType CApplyRNAITSDlg::GetNextRNA_IGSChoice ( CApplyRNAITSDlg::ERNA_IGSType field_type )

Definition at line 748 of file apply_rna_its_dlg.cpp.

References eRNA_IGS_16S, eRNA_IGS_16S_23S_Igs, eRNA_IGS_23S, and eRNA_IGS_unknown.

Referenced by OnFirstChoiceSelected().

◆ GetNextRNA_ITSChoice()

CApplyRNAITSDlg::ERNA_ITSType CApplyRNAITSDlg::GetNextRNA_ITSChoice ( CApplyRNAITSDlg::ERNA_ITSType field_type )

Definition at line 710 of file apply_rna_its_dlg.cpp.

References eRNA_ITS_18S, eRNA_ITS_18S_small, eRNA_ITS_28S, eRNA_ITS_28S_large, eRNA_ITS_58S, eRNA_ITS_Its1, eRNA_ITS_Its2, eRNA_ITS_large, eRNA_ITS_small, eRNA_ITS_unknown, GetRNA_ITSTypeFromName(), m_ChoiceList, and ToStdString().

Referenced by OnFirstChoiceSelected().

◆ GetRNA_IGSName()

const string & CApplyRNAITSDlg::GetRNA_IGSName ( ERNA_IGSType field_type )

static

Definition at line 115 of file apply_rna_its_dlg.cpp.

References kEmptyStr.

Referenced by OnAnyOtherChoiceSelected(), and OnFirstChoiceSelected().

◆ GetRNA_IGSTypeFromName()

CApplyRNAITSDlg::ERNA_IGSType CApplyRNAITSDlg::GetRNA_IGSTypeFromName ( const string & label )

static

Definition at line 126 of file apply_rna_its_dlg.cpp.

References eRNA_IGS_unknown, and label.

Referenced by OnAnyOtherChoiceSelected(), and OnFirstChoiceSelected().

◆ GetRNA_ITSName()

const string & CApplyRNAITSDlg::GetRNA_ITSName ( ERNA_ITSType field_type )

static

Definition at line 84 of file apply_rna_its_dlg.cpp.

References kEmptyStr.

Referenced by OnAnyOtherChoiceSelected(), OnFirstChoiceSelected(), and x_Set_ITSArray().

◆ GetRNA_ITSTypeFromName()

CApplyRNAITSDlg::ERNA_ITSType CApplyRNAITSDlg::GetRNA_ITSTypeFromName ( const string & label )

static

Definition at line 95 of file apply_rna_its_dlg.cpp.

References eRNA_ITS_unknown, and label.

Referenced by GetNextRNA_ITSChoice(), OnAnyOtherChoiceSelected(), and OnFirstChoiceSelected().

◆ GetRNAITSList_AlignCoordFromDlg()

CApplyRNAITSDlg::TVecConstSeqFeat CApplyRNAITSDlg::GetRNAITSList_AlignCoordFromDlg ( const CBioseq_Handle & bsh )

Definition at line 1086 of file apply_rna_its_dlg.cpp.

References AddMiscRNA(), AddRibosomalRNA(), IAlnExplorer::eBackwards, eChoice_empty, IAlnExplorer::eForward, Error(), NStr::FindNoCase(), CBioseq_Handle::GetBioseqLength(), CBioseq_Handle::GetCompleteBioseq(), CException::GetMsg(), CAlnMap::GetSeqPosFromAlnPos(), NStr::IsBlank(), LOG_POST, m_Alnmap, m_ChoiceList, CBulkCmdDlg::m_ErrorMessage, max(), min(), NPOS, NStr::ReplaceInPlace(), row, NStr::StringToInt(), ToStdString(), x_GetRow(), and x_UpdatePartials().

Referenced by ObtainRNAITSList().

◆ GetRNAITSList_SeqCoordFromDlg()

CApplyRNAITSDlg::TVecConstSeqFeat CApplyRNAITSDlg::GetRNAITSList_SeqCoordFromDlg ( const CBioseq_Handle & bsh )

Definition at line 1172 of file apply_rna_its_dlg.cpp.

References AddMiscRNA(), AddRibosomalRNA(), eChoice_empty, Error(), NStr::FindNoCase(), CBioseq_Handle::GetBioseqLength(), CException::GetMsg(), NStr::IsBlank(), LOG_POST, m_ChoiceList, max(), min(), NPOS, NStr::ReplaceInPlace(), row, NStr::StringToInt(), ToStdString(), and x_UpdatePartials().

Referenced by Apply_RNAITS_ToBioseq(), and ObtainRNAITSList().

◆ Init()

void CApplyRNAITSDlg::Init ( void )

Initialises member variables.

Definition at line 184 of file apply_rna_its_dlg.cpp.

References LoadSettings(), m_3partial, m_5partial, m_AlignCoords, m_Alnmap, m_Choice, m_ITSRadiobox, m_LeaveUp, m_PropSeqids, NULL, and SetRegistryPath().

Referenced by CApplyRNAITSDlg().

◆ LoadSettings()

void CApplyRNAITSDlg::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 437 of file apply_rna_its_dlg.cpp.

References CGuiRegistry::GetInstance(), CRegistryReadView::GetInt(), CGuiRegistry::GetReadView(), kApplyChoice, m_Choice, and m_RegPath.

Referenced by Init().

◆ ObtainRNAITSList()

CApplyRNAITSDlg::TVecConstSeqFeat CApplyRNAITSDlg::ObtainRNAITSList ( const CBioseq_Handle & bsh )

Definition at line 880 of file apply_rna_its_dlg.cpp.

References GetRNAITSList_AlignCoordFromDlg(), GetRNAITSList_SeqCoordFromDlg(), and m_AlignCoords.

Referenced by Apply_RNAITS_ToBioseq(), Apply_RNAITS_ToBioseqSet(), and Apply_RNAITS_ToTSE().

◆ OnAnyOtherChoiceSelected()

void CApplyRNAITSDlg::OnAnyOtherChoiceSelected ( wxCommandEvent & event )

Definition at line 567 of file apply_rna_its_dlg.cpp.

References eChoice_empty, eChoice_not_empty, eRNA_IGS_unknown, eRNA_ITS_unknown, GetRNA_IGSName(), GetRNA_IGSTypeFromName(), GetRNA_ITSName(), GetRNA_ITSTypeFromName(), ID_CHOICE_FIFTH, ID_CHOICE_FOURTH, ID_CHOICE_SECOND, ID_CHOICE_THIRD, m_ChoiceList, m_ITSRadiobox, n, ToStdString(), ToWxString(), and rapidjson::value.

◆ OnCancelClick()

void CApplyRNAITSDlg::OnCancelClick ( wxCommandEvent & event )

Definition at line 462 of file apply_rna_its_dlg.cpp.

References x_SaveAndDestroyFrame().

◆ OnCloseWindow()

void CApplyRNAITSDlg::OnCloseWindow ( wxCloseEvent & event )

Definition at line 467 of file apply_rna_its_dlg.cpp.

References x_SaveAndDestroyFrame().

◆ OnCtrlFromKillFocus()

void CApplyRNAITSDlg::OnCtrlFromKillFocus ( wxFocusEvent & event )

Definition at line 615 of file apply_rna_its_dlg.cpp.

References _, eChoice_empty, Error(), CException::GetMsg(), LOG_POST, m_ChoiceList, NPOS, NStr::NumericToString(), NStr::StringToInt(), and ToStdString().

Referenced by CreateControls().

◆ OnCtrlToKillFocus()

void CApplyRNAITSDlg::OnCtrlToKillFocus ( wxFocusEvent & event )

Definition at line 651 of file apply_rna_its_dlg.cpp.

References _, eChoice_empty, Error(), CException::GetMsg(), LOG_POST, m_ChoiceList, NPOS, NStr::NumericToString(), NStr::StringToInt(), and ToStdString().

Referenced by CreateControls().

◆ OnFirstChoiceSelected()

void CApplyRNAITSDlg::OnFirstChoiceSelected ( wxCommandEvent & event )

Definition at line 514 of file apply_rna_its_dlg.cpp.

References _, eChoice_empty, eChoice_not_empty, eRNA_IGS_unknown, eRNA_ITS_unknown, GetNextRNA_IGSChoice(), GetNextRNA_ITSChoice(), GetRNA_IGSName(), GetRNA_IGSTypeFromName(), GetRNA_ITSName(), GetRNA_ITSTypeFromName(), m_ChoiceList, m_ITSRadiobox, n, ToStdString(), ToWxString(), and rapidjson::value.

◆ OnGoClick()

void CApplyRNAITSDlg::OnGoClick ( wxCommandEvent & event )

Definition at line 446 of file apply_rna_its_dlg.cpp.

References cmd, ICommandProccessor::Execute(), GetCommand(), GetErrorMessage(), NStr::IsBlank(), CBulkCmdDlg::m_CmdProccessor, m_LeaveUp, NULL, ToWxString(), and wxT.

◆ OnITSRadioBoxSelected()

void CApplyRNAITSDlg::OnITSRadioBoxSelected ( wxCommandEvent & event )

Definition at line 690 of file apply_rna_its_dlg.cpp.

References m_Choice, m_ChoiceList, m_ITSRadiobox, n, x_Set_IGSArray(), and x_Set_ITSArray().

◆ Propagate_RNAITSList()

void CApplyRNAITSDlg::Propagate_RNAITSList	(	const CBioseq_Handle &	bsh,
		TVecConstSeqFeat &	featlist,
		CRef< CCmdComposite >	composite,
		bool &	modified,
		bool	create_general_only
	)