#include <gui/packages/pkg_sequence_edit/exon_from_cds.hpp>

Inheritance diagram for CExonFromCds:

Collaboration diagram for CExonFromCds:

Public Member Functions
	CExonFromCds ()
	Constructors. More...

	CExonFromCds (wxWindow parent, IWorkbench wb, CSeqFeatData::ESubtype subtype, const string &title, wxWindowID id=wxID_ANY, const wxString &caption=_("Exon From CDS"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(900, 500), long style=wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL)

bool	Create (wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Exon From CDS"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(900, 500), long style=wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL)
	Creation. More...

	~CExonFromCds ()
	Destructor. More...

void	Init ()
	Initialises member variables. More...

void	CreateControls ()
	Creates the controls and sizers. More...

void	ProcessUpdateFeatEvent (wxCommandEvent &event)

wxBitmap	GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...

wxIcon	GetIconResource (const wxString &name)
	Retrieves icon resources. More...

virtual CRef< CCmdComposite >	GetCommand ()

virtual string	GetErrorMessage ()

Public Member Functions inherited from CBulkCmdDlg
	CBulkCmdDlg ()
	Constructors. More...

	CBulkCmdDlg (IWorkbench *wb)

bool	Create (wxWindow *parent, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

bool	Create (wxWindow parent, IWorkbench wb, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

	~CBulkCmdDlg ()
	Destructor. More...

virtual void	OnChildChange (wxWindow *wnd)

virtual void	ExecuteCmd (CRef< CCmdComposite > cmd)

bool	GetTopLevelSeqEntryAndProcessor ()

TConstScopedObjects	GetSelectedObjects ()

void	UpdateChildrenFeaturePanels (wxSizer *sizer)

void	onCancelPressed (wxCommandEvent &event)

Static Public Member Functions
static bool	ShowToolTips ()
	Should we show tooltips? More...

Private Member Functions
void	AddIntron (CSeq_entry_Handle seh, CRef< CCmdComposite > cmd, int intron_start, int intron_stop, bool intron_fuzz_start, bool intron_fuzz_stop, CRef< CSeq_id > id, TSeqPos seq_length, int exon_number, bool minus_strand)

Private Attributes
string	m_ErrorMessage

CStringConstraintPanel *	m_StringConstraintPanel

COkCancelPanel *	m_OkCancel

wxCheckBox *	m_Introns

wxTextCtrl *	m_Number

int	m_ExonNum

CFieldChoicePanel *	m_FieldType

CSeqFeatData::ESubtype	m_Type

string	m_Title

Additional Inherited Members
Protected Member Functions inherited from CBulkCmdDlg
edit::EExistingText	x_GetExistingTextHandling (int num_conflicts, bool allow_multiple=false)

Protected Attributes inherited from CBulkCmdDlg
IWorkbench *	m_Workbench

ICommandProccessor *	m_CmdProccessor

objects::CSeq_entry_Handle	m_TopSeqEntry

CConstRef< objects::CSeq_submit >	m_SeqSubmit

string	m_ErrorMessage

Detailed Description

Definition at line 84 of file exon_from_cds.hpp.

Constructor & Destructor Documentation

◆ CExonFromCds() [1/2]

CExonFromCds::CExonFromCds ( )

Constructors.

CExonFromCds type definition

CExonFromCds event table definition

CExonFromCds constructors

Definition at line 85 of file exon_from_cds.cpp.

References Init().

◆ CExonFromCds() [2/2]

CExonFromCds::CExonFromCds	(	wxWindow *	parent,
		IWorkbench *	wb,
		CSeqFeatData::ESubtype	subtype,
		const string &	title,
		wxWindowID	id = `wxID_ANY`,
		const wxString &	caption = `_("Exon From CDS")`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(900, 500)`,
		long	style = `wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL`
	)

Definition at line 90 of file exon_from_cds.cpp.

References Create(), Init(), m_Title, and ncbi::grid::netcache::search::fields::size.

◆ ~CExonFromCds()

CExonFromCds::~CExonFromCds ( )

Destructor.

CExonFromCds destructor

Definition at line 123 of file exon_from_cds.cpp.

Member Function Documentation

◆ AddIntron()

void CExonFromCds::AddIntron	(	CSeq_entry_Handle	seh,
		CRef< CCmdComposite >	cmd,
		int	intron_start,
		int	intron_stop,
		bool	intron_fuzz_start,
		bool	intron_fuzz_stop,
		CRef< CSeq_id >	id,
		TSeqPos	seq_length,
		int	exon_number,
		bool	minus_strand
	)

private

Definition at line 330 of file exon_from_cds.cpp.

References CSeq_feat::AddQualifier(), cmd, eExtreme_Positional, eNa_strand_minus, CSeq_feat_Base::GetLocation(), NStr::IntToString(), CSeq_loc::IsPartialStart(), CSeq_loc::IsPartialStop(), CSeq_feat_Base::SetData(), CSeq_loc::SetInt(), CSeq_feat_Base::SetLocation(), CSeq_feat_Base::SetPartial(), CSeq_loc::SetPartialStart(), CSeq_loc::SetPartialStop(), and CSeq_loc::SetStrand().

Referenced by GetCommand().

◆ Create()

bool CExonFromCds::Create	(	wxWindow *	parent,
		wxWindowID	id = `wxID_ANY`,
		const wxString &	caption = `_("Exon From CDS")`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(900, 500)`,
		long	style = `wxCAPTION\|wxRESIZE_BORDER\|wxSYSTEM_MENU\|wxCLOSE_BOX\|wxTAB_TRAVERSAL`
	)

Creation.

CExonFromCds creator

Definition at line 102 of file exon_from_cds.cpp.

References CBulkCmdDlg::Create(), CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CExonFromCds().

◆ CreateControls()

void CExonFromCds::CreateControls ( )

Creates the controls and sizers.

Control creation for CExonFromCds

Definition at line 148 of file exon_from_cds.cpp.

References _, CFieldNamePanel::eFieldType_CDSGeneProt, CBulkCmdDlg::GetTopLevelSeqEntryAndProcessor(), m_FieldType, m_Introns, m_Number, m_OkCancel, m_StringConstraintPanel, CFieldChoicePanel::SetFieldType(), wxFIXED_MINSIZE, and wxID_ANY.

Referenced by Create().

◆ GetBitmapResource()

wxBitmap CExonFromCds::GetBitmapResource ( const wxString & name )

Retrieves bitmap resources.

Get bitmap resources

Definition at line 214 of file exon_from_cds.cpp.

◆ GetCommand()

CRef< CCmdComposite > CExonFromCds::GetCommand ( void )

virtual

Implements CBulkCmdDlg.

Definition at line 244 of file exon_from_cds.cpp.

References AddIntron(), CSeq_feat::AddQualifier(), cmd, CSeq_loc_CI::eEmpty_Skip, eExtreme_Positional, eNa_strand_minus, CSeq_loc_CI::eOrder_Biological, fi, CMiscSeqTableColumn::GetApplyObjects(), CBioseq_Handle::GetBioseqLength(), CFieldChoicePanel::GetFieldName(), CRange_Base::GetFrom(), CSeq_loc::GetId(), CSeq_feat_Base::GetLocation(), CStringConstraintPanel::GetStringConstraint(), CRange_Base::GetTo(), NStr::IntToString(), CSeq_loc::IsPartialStart(), CSeq_loc::IsPartialStop(), m_FieldType, m_Introns, m_Number, m_StringConstraintPanel, m_Title, CBulkCmdDlg::m_TopSeqEntry, m_Type, CSeq_feat_Base::SetData(), CSeq_loc::SetInt(), CSeq_feat_Base::SetLocation(), CSeq_feat_Base::SetPartial(), CSeq_loc::SetPartialStart(), CSeq_loc::SetPartialStop(), and CSeq_loc::SetStrand().

◆ GetErrorMessage()

string CExonFromCds::GetErrorMessage ( )

virtual

Implements CBulkCmdDlg.

Definition at line 238 of file exon_from_cds.cpp.

References m_ErrorMessage.

◆ GetIconResource()

wxIcon CExonFromCds::GetIconResource ( const wxString & name )

Retrieves icon resources.

Get icon resources

Definition at line 227 of file exon_from_cds.cpp.

◆ Init()

void CExonFromCds::Init ( void )

Initialises member variables.

Member initialisation

Definition at line 134 of file exon_from_cds.cpp.

References m_ErrorMessage, m_OkCancel, m_StringConstraintPanel, and NULL.

Referenced by CExonFromCds().

◆ ProcessUpdateFeatEvent()

void CExonFromCds::ProcessUpdateFeatEvent ( wxCommandEvent & event )

◆ ShowToolTips()

bool CExonFromCds::ShowToolTips ( )

static

Should we show tooltips?

Definition at line 205 of file exon_from_cds.cpp.

Member Data Documentation

◆ m_ErrorMessage

string CExonFromCds::m_ErrorMessage

private

Definition at line 124 of file exon_from_cds.hpp.

Referenced by GetErrorMessage(), and Init().

◆ m_ExonNum

int CExonFromCds::m_ExonNum

private

Definition at line 129 of file exon_from_cds.hpp.

◆ m_FieldType

CFieldChoicePanel* CExonFromCds::m_FieldType

private

Definition at line 130 of file exon_from_cds.hpp.

Referenced by CreateControls(), and GetCommand().

◆ m_Introns

wxCheckBox* CExonFromCds::m_Introns

private

Definition at line 127 of file exon_from_cds.hpp.

Referenced by CreateControls(), and GetCommand().

◆ m_Number

wxTextCtrl* CExonFromCds::m_Number

private

Definition at line 128 of file exon_from_cds.hpp.

Referenced by CreateControls(), and GetCommand().

◆ m_OkCancel

COkCancelPanel* CExonFromCds::m_OkCancel

private

Definition at line 126 of file exon_from_cds.hpp.

Referenced by CreateControls(), and Init().

◆ m_StringConstraintPanel

CStringConstraintPanel* CExonFromCds::m_StringConstraintPanel

private

Definition at line 125 of file exon_from_cds.hpp.

Referenced by CreateControls(), GetCommand(), and Init().

◆ m_Title

string CExonFromCds::m_Title

private

Definition at line 132 of file exon_from_cds.hpp.

Referenced by CExonFromCds(), and GetCommand().

◆ m_Type

CSeqFeatData::ESubtype CExonFromCds::m_Type

private

Definition at line 131 of file exon_from_cds.hpp.

Referenced by GetCommand().

The documentation for this class was generated from the following files:

include/gui/packages/pkg_sequence_edit/exon_from_cds.hpp
src/gui/packages/pkg_sequence_edit/exon_from_cds.cpp

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CExonFromCds() [1/2]

◆ CExonFromCds() [2/2]

◆ ~CExonFromCds()

Member Function Documentation

◆ AddIntron()

◆ Create()

◆ CreateControls()

◆ GetBitmapResource()

◆ GetCommand()

◆ GetErrorMessage()

◆ GetIconResource()

◆ Init()

◆ ProcessUpdateFeatEvent()

◆ ShowToolTips()

Member Data Documentation

◆ m_ErrorMessage

◆ m_ExonNum

◆ m_FieldType

◆ m_Introns

◆ m_Number

◆ m_OkCancel

◆ m_StringConstraintPanel

◆ m_Title

◆ m_Type