Search Toolkit Book for CPC_Atoms
#include <objects/pcsubstance/PC_Atoms.hpp>
Inheritance diagram for CPC_Atoms:
Collaboration diagram for CPC_Atoms:
Public Member Functions | |
| CPC_Atoms (void) | |
| ~CPC_Atoms (void) | |
| Public Member Functions inherited from CPC_Atoms_Base | |
| CPC_Atoms_Base (void) | |
| virtual | ~CPC_Atoms_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetAid (void) const |
| [Note: Parallel Arrays must be kept Synchronized] Atom Identifiers (vector) Note: Atom ID's must be greater than "0" Check if a value has been assigned to Aid data member. More... | |
| bool | CanGetAid (void) const |
| Check if it is safe to call GetAid method. More... | |
| void | ResetAid (void) |
| Reset Aid data member. More... | |
| const TAid & | GetAid (void) const |
| Get the Aid member data. More... | |
| TAid & | SetAid (void) |
| Assign a value to Aid data member. More... | |
| bool | IsSetElement (void) const |
| Atomic Numbers (vector) Check if a value has been assigned to Element data member. More... | |
| bool | CanGetElement (void) const |
| Check if it is safe to call GetElement method. More... | |
| void | ResetElement (void) |
| Reset Element data member. More... | |
| const TElement & | GetElement (void) const |
| Get the Element member data. More... | |
| TElement & | SetElement (void) |
| Assign a value to Element data member. More... | |
| bool | IsSetLabel (void) const |
| Independent Arrays of ID-Value Pairs (Technically allows multiple values per Atom) Atom labels Check if a value has been assigned to Label data member. More... | |
| bool | CanGetLabel (void) const |
| Check if it is safe to call GetLabel method. More... | |
| void | ResetLabel (void) |
| Reset Label data member. More... | |
| const TLabel & | GetLabel (void) const |
| Get the Label member data. More... | |
| TLabel & | SetLabel (void) |
| Assign a value to Label data member. More... | |
| bool | IsSetIsotope (void) const |
| Isotopic Information Check if a value has been assigned to Isotope data member. More... | |
| bool | CanGetIsotope (void) const |
| Check if it is safe to call GetIsotope method. More... | |
| void | ResetIsotope (void) |
| Reset Isotope data member. More... | |
| const TIsotope & | GetIsotope (void) const |
| Get the Isotope member data. More... | |
| TIsotope & | SetIsotope (void) |
| Assign a value to Isotope data member. More... | |
| bool | IsSetCharge (void) const |
| Formal Charges Check if a value has been assigned to Charge data member. More... | |
| bool | CanGetCharge (void) const |
| Check if it is safe to call GetCharge method. More... | |
| void | ResetCharge (void) |
| Reset Charge data member. More... | |
| const TCharge & | GetCharge (void) const |
| Get the Charge member data. More... | |
| TCharge & | SetCharge (void) |
| Assign a value to Charge data member. More... | |
| bool | IsSetRadical (void) const |
| Radical Information Check if a value has been assigned to Radical data member. More... | |
| bool | CanGetRadical (void) const |
| Check if it is safe to call GetRadical method. More... | |
| void | ResetRadical (void) |
| Reset Radical data member. More... | |
| const TRadical & | GetRadical (void) const |
| Get the Radical member data. More... | |
| TRadical & | SetRadical (void) |
| Assign a value to Radical data member. More... | |
| bool | IsSetSource (void) const |
| E.g. More... | |
| bool | CanGetSource (void) const |
| Check if it is safe to call GetSource method. More... | |
| void | ResetSource (void) |
| Reset Source data member. More... | |
| const TSource & | GetSource (void) const |
| Get the Source member data. More... | |
| TSource & | SetSource (void) |
| Assign a value to Source data member. More... | |
| bool | IsSetComment (void) const |
| Atom Comments Check if a value has been assigned to Comment data member. More... | |
| bool | CanGetComment (void) const |
| Check if it is safe to call GetComment method. More... | |
| void | ResetComment (void) |
| Reset Comment data member. More... | |
| const TComment & | GetComment (void) const |
| Get the Comment member data. More... | |
| TComment & | SetComment (void) |
| Assign a value to Comment data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CPC_Atoms_Base | Tparent |
Private Member Functions | |
| CPC_Atoms (const CPC_Atoms &value) | |
| CPC_Atoms & | operator= (const CPC_Atoms &value) |
Additional Inherited Members | |
| Public Types inherited from CPC_Atoms_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_aid , e_element , e_label , e_isotope , e_charge , e_radical , e_source , e_comment } |
| typedef vector< int > | TAid |
| typedef vector< int > | TElement |
| typedef list< CRef< CPC_AtomString > > | TLabel |
| typedef list< CRef< CPC_AtomInt > > | TIsotope |
| typedef list< CRef< CPC_AtomInt > > | TCharge |
| typedef list< CRef< CPC_AtomRadical > > | TRadical |
| typedef list< CRef< CPC_AtomSource > > | TSource |
| typedef list< CRef< CPC_AtomString > > | TComment |
| typedef Tparent::CMemberIndex< E_memberIndex, 9 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CPC_Atoms –.
Definition at line 65 of file PC_Atoms.hpp.
The documentation for this class was generated from the following files:
- include/objects/pcsubstance/PC_Atoms.hpp
- src/objects/pcsubstance/PC_Atoms.cpp
