Search Toolkit Book for CPhyloNodeData

#include <gui/widgets/phylo_tree/phylo_tree_node.hpp>

Collaboration diagram for CPhyloNodeData:

Public Types
enum	TSelectedState { eNotSelected , eSelected , eTraced , eShared }

enum	TDisplayChildren { eShowChildren , eHideChildren }

enum	TBoundingState { eUnBounded , eBounded }

typedef objects::CNode::TId	TID

typedef string	TLabel

typedef float	TDistance

typedef int	TClusterID

typedef vector< int >	TSelClusterIDs

typedef CBioTreeFeatureList	TNodeFeaturesType

typedef CVect2< float >	TPoint

typedef pair< int, int >	TIndex

typedef string	TColor

Public Member Functions
	CPhyloNodeData ()

	CPhyloNodeData (const CPhyloNodeData &rhs)

	~CPhyloNodeData ()

CPhyloNodeData &	operator= (const CPhyloNodeData &rhs)

void	Init (const CBioTreeFeatureDictionary &dict, CRgbaGradColorTable *t)

void	Sync (CBioTreeFeatureDictionary &dict)

const CRef< objects::CSeq_id > &	GetSeqID () const

void	SetSeqID (objects::CSeq_id *sid)

CBioTreeFeatureList &	GetBioTreeFeatureList ()

const CBioTreeFeatureList &	GetBioTreeFeatureList () const

void	SetBioTreeFeatureList (const CBioTreeFeatureList &btcfl)

int	GetNumLeaves () const

void	SetNumLeaves (int x_ln)

int	GetNumLeavesEx () const

void	SetNumLeavesEx (int x_ln)

int	GetPrimaryCluster () const
	With selection clusters a node may have multiple cluster ids. More...

size_t	GetNumClusters () const
	Return total # of applicable clusters - selection + m_ClusterID. More...

TClusterID	GetClusterID (void) const

void	SetClusterID (TClusterID x_id)

int	GetPamlCounter () const

void	SetPamlCounter (int x_ctr)

TID	GetId () const

void	SetId (TID x_id)

TDistance	GetDistance () const

void	SetDistance (TDistance x_dist)

TDistance	GetDistanceFromRoot () const

void	SetDistanceFromRoot (TDistance x_dist)

TDistance	GetMaxChildDistance () const

void	SetMaxChildDistance (TDistance x_dist)

void	SetLabel (const TLabel &x_label)

const TLabel &	GetLabel () const

void	Set (TID x_id, TDistance x_dist, const TLabel &x_label)

TPoint &	XY ()

float &	X ()

float &	Y ()

TPoint	XY () const

float	X () const

float	Y () const

TIndex &	IDX ()

const TIndex &	IDX () const

TSelectedState	GetSelectedState () const

void	SetSelectedState (TSelectedState x_state)

CPhyloTreeScheme::TPhyloTreeColors	GetColoration () const

void	SetColoration (CPhyloTreeScheme::TPhyloTreeColors ct)

TDisplayChildren	GetDisplayChildren () const

void	SetDisplayChildren (TDisplayChildren show)

TBoundingState	GetBoundedDisplay () const

short	GetNodeEdColorIdx () const

short	GetNodeFgColorIdx () const

short	GetClusterColorIdx () const

short	GetLabelFgColorIdx () const

short	GetLabelBgColorIdx ()

void	SetNodeFgColorIdx (short idx)

void	SetNodeEdgeColorIdx (short idx)

void	SetClusterColorIdx (short idx)

void	SetLabelColorIdx (short idx)

void	SetLabelBgColorIdx (short idx)

void	SetLabelRect (const CGlRect< float > &r)

CGlRect< float >	GetLabelRect () const

void	SetNodeOffset (const CVect2< float > &o)

CVect2< float >	GetNodeOffset () const

void	SetNodePixelOffset (const CVect2< float > &o)

CVect2< float >	GetNodePixelOffset () const

bool	HasSelClusters () const

TSelClusterIDs &	GetSelClusters ()

void	SetSelClusters (const TSelClusterIDs &sc)

void	SetMarkerColors (const string &str)

string	GetMarkerColorsAsString ()

bool	HasNodeMarker () const

vector< CRgbaColor > &	GetMarkerColors ()

float	GetMarkerSize () const

void	SetMarkerSize (float f)

CSubtreeBoundary *	GetSubtreeBoundary ()
	Gets current boundary or creates a new one if m_Boundary is NULL. More...

void	DeleteSubtreeBoundary ()
	Deletes current boundary (if not NULL). More...

float	GetNodeSize () const

void	SetNodeSize (float x_sz)

float	GetAngle (void) const

void	SetAngle (float angle)

float	GetDrawAngle (void) const

void	SetDrawAngle (float angle)

float	GetEdgeScore () const

void	SetEdgeScore (float s)

void	SetFeature (CBioTreeFeatureDictionary &dict, const string &name, const string &value)

void	RemoveFeature (CBioTreeFeatureDictionary &dict, const string &name)

void	InitFeatures (const CBioTreeFeatureDictionary &dict, CRgbaGradColorTable *t)

float	GetScaledAngle (const CVect3< float > &scale, float a, bool for_label=true) const
	Utility to get screen rotation angle after scaling. More...

CVect2< float >	GetNodePosEx (const CVect3< float > &scale, CPhyloTreeScheme *scheme, float &node_size, float size_scaler=1.0f) const
	Get modified center of node position - this works for collapsed nodes in rotated layouts and with offsets between label and node. More...

void	Render (const CGlPane &pane, const CGlTextureFont &font, CRgbaGradColorTable *color_table, const CVect3< float > &scale, bool truncate_labels, TModelUnit max_len=-1.0f)
	Draw the label using scale to compute its offset from m_BasePos. More...

void	RenderRotated (const CGlPane &pane, const CGlTextureFont &font, CRgbaGradColorTable *color_table, const CVect3< float > &scale, float orig_angle, bool truncate_labels)
	Draw the label and rotate it to match m_Angle (radial text) This form does not support label truncation. More...

CVect2< float >	GetTextOut (CGlPane &pane, const CGlTextureFont &font, const CVect3< float > &scale, bool truncate_labels, string &text_out)
	Return the drawing position and (possibly truncated) text. More...

void	GetLabelRect (const CVect2< float > &scale, CVect2< float > &lower_left, CVect2< float > &upper_right, bool rotated=false)
	Find the rectangle for the label given the current zoom level (scale) More...

bool	PointInTextBox (const CVect2< float > &scale, CVect2< float > pt, bool rotated=false)
	Return true if pt is inside of this nodes text box. More...

CGlRect< float >	GetLabelRect (const CVect2< float > &scale, bool rotated)
	Find the rectangle for the label in pixel coordinates, taking rotation into account. More...

void	GetBoundingRect (const CVect2< float > &scale, CVect2< float > &lower_left, CVect2< float > &upper_right, bool rotated=false)
	Find the rectangle for the node and label combined given the current zoom level (scale) More...

CVect4< CVect2< float > >	GetRotatedTextBox (const CVect3< float > &scale, float &angle, float orig_angle=0.0f) const
	Return text box (m_LabelRect) rotated to align with radial edges. More...

CVect2< float >	GetRotatedTextPos (const CVect3< float > &scale, float &angle) const
	Return the text starting point rotated to align with radial edges. More...

float	GetMinX (const CVect2< float > &scale)
	Return labels minimal X coordinate. More...

float	GetDefaultNodeSize (const CPhyloTreeScheme *scheme) const
	Get modified node size - includes scaled (BOA) size. More...

float	GetNodeLayoutSize (const CPhyloTreeScheme *scheme) const
	Get modified node size - use this instead of GetDefaultNodeSize when doing layout (doesn't go to 0 if leaf node size does) This is basically the height of the node for layout purposes. More...

float	GetNodeWidthScaler (const CPhyloTreeScheme *scheme) const
	Get modified node width (length) for collapsed nodes. Default is 1. More...

float	GetNodeOverhang (const CVect2< float > &scale) const
	Get extenstion of node beyond end of edge in pixels. More...

void	SetVisible (bool b)
	Flag to renderer to determine whether to draw label. More...

bool	GetVisible () const

void	SetDisplayLabel (const string &t)
	set/get label text More...

const string &	GetDisplayLabel () const

void	SetNodeDisplaySize (float s)
	set/get node size (this is the result of GetDefaultNodeSize()) More...

float	GetNodeDisplaySize () const

void	SetEdgeColorGradient (bool g)
	Enable or disable gradient coloring of edges between nodes. More...

bool	GetEdgeColorGradient () const

void	SetNodeDisplayColor (const CRgbaColor &c)
	Set/get node color. More...

CRgbaColor	GetNodeDisplayColor () const

void	SetTextDisplayColor (const CRgbaColor &c)
	Set/get text color. More...

CRgbaColor	GetTextDisplayColor () const

void	SetAlreadyDrawn (bool b)
	Flag set after each drawing and cleared when rendering frame done. More...

bool	GetAlreadyDrawn () const

Static Public Attributes
static const TColor	TNoColor = ""

Protected Member Functions
string	x_GetParameter (const string &features, const string &parm)

bool	x_HasExtendedParms () const

Protected Attributes
CRef< objects::CSeq_id >	m_SeqID

CBioTreeFeatureList	m_Features

int	m_NumLeaves

int	m_NumLeavesEx

int	m_PamlCounter

TClusterID	m_ClusterID

TID	m_ID

TDistance	m_Distance

TDistance	m_DistanceFromRoot

TDistance	m_MaxChildDistance

TPoint	m_XY

TIndex	m_IDX

float	m_Angle

float	m_DrawAngle

float	m_EdgeScore

CGlRect< float >	m_LabelRect

CVect2< float >	m_NodeOffset

CVect2< float >	m_NodePixelOffset
	Pixel offset to apply the node. More...

TSelectedState	m_Selected

CPhyloTreeScheme::TPhyloTreeColors	m_ColorType

SExtendedNodeParms *	m_ExtendedParms

CRgbaColor	m_NodeColor
	Current node color. More...

CRgbaColor	m_FgColor
	Current text color. More...

TLabel	m_Label
	Full label. More...

string	m_Text
	Text to render. More...

float	m_Size

float	m_NodeSize
	Scaled node size. More...

float	m_NodeWidth
	This is computed by GetNodeWidthScaler(..) for collapsed nodes and we need to hang onto it for node label positioning. More...

short	m_NodeEdColorIdx
	Node colors defined by scheme. More...

short	m_NodeFgColorIdx

short	m_ClusterColorIdx

short	m_LabelFgColorIdx
	Label color. More...

short	m_LabelBgColorIdx

bool	m_EdgeColorGradient
	Controls use of gradient coloring for edges - if false, edges will be a single color, if true the edge will transition from child to parent color. More...

bool	m_Children
	expand-collapse state (expanded==true) More...

bool	m_Visible
	True if node is visible. More...

bool	m_AlreadyDrawn
	Text is alpha-blended so we add a flag to prevent drawing multiple times. More...

Detailed Description

Definition at line 82 of file phylo_tree_node.hpp.

Member Typedef Documentation

◆ TClusterID

typedef int CPhyloNodeData::TClusterID

Definition at line 87 of file phylo_tree_node.hpp.

◆ TColor

typedef string CPhyloNodeData::TColor

Definition at line 110 of file phylo_tree_node.hpp.

◆ TDistance

typedef float CPhyloNodeData::TDistance

Definition at line 86 of file phylo_tree_node.hpp.

◆ TID

typedef objects::CNode::TId CPhyloNodeData::TID

Definition at line 84 of file phylo_tree_node.hpp.

◆ TIndex

typedef pair<int, int> CPhyloNodeData::TIndex

Definition at line 109 of file phylo_tree_node.hpp.

◆ TLabel

typedef string CPhyloNodeData::TLabel

Definition at line 85 of file phylo_tree_node.hpp.

◆ TNodeFeaturesType

typedef CBioTreeFeatureList CPhyloNodeData::TNodeFeaturesType

Definition at line 89 of file phylo_tree_node.hpp.

◆ TPoint

typedef CVect2<float> CPhyloNodeData::TPoint

Definition at line 108 of file phylo_tree_node.hpp.

◆ TSelClusterIDs

typedef vector<int> CPhyloNodeData::TSelClusterIDs

Definition at line 88 of file phylo_tree_node.hpp.

Member Enumeration Documentation

◆ TBoundingState

enum CPhyloNodeData::TBoundingState

Enumerator
eUnBounded
eBounded

Definition at line 103 of file phylo_tree_node.hpp.

◆ TDisplayChildren

enum CPhyloNodeData::TDisplayChildren

Enumerator
eShowChildren
eHideChildren

Definition at line 98 of file phylo_tree_node.hpp.

◆ TSelectedState

enum CPhyloNodeData::TSelectedState

Enumerator
eNotSelected
eSelected
eTraced
eShared

Definition at line 91 of file phylo_tree_node.hpp.

Constructor & Destructor Documentation

◆ CPhyloNodeData() [1/2]

CPhyloNodeData::CPhyloNodeData ( )

inline

Definition at line 115 of file phylo_tree_node.hpp.

◆ CPhyloNodeData() [2/2]

CPhyloNodeData::CPhyloNodeData ( const CPhyloNodeData & rhs )

Definition at line 160 of file phylo_tree_node.cpp.

◆ ~CPhyloNodeData()

CPhyloNodeData::~CPhyloNodeData ( )

Definition at line 211 of file phylo_tree_node.cpp.

References m_ExtendedParms, and NULL.

Member Function Documentation

◆ DeleteSubtreeBoundary()

void CPhyloNodeData::DeleteSubtreeBoundary ( )

Deletes current boundary (if not NULL).

Definition at line 341 of file phylo_tree_node.cpp.

References SExtendedNodeParms::m_Boundary, m_ExtendedParms, NULL, and x_HasExtendedParms().

Referenced by InitFeatures().

◆ GetAlreadyDrawn()

bool CPhyloNodeData::GetAlreadyDrawn ( ) const

inline

Definition at line 391 of file phylo_tree_node.hpp.

References m_AlreadyDrawn.

◆ GetAngle()

float CPhyloNodeData::GetAngle ( void ) const

inline

Definition at line 267 of file phylo_tree_node.hpp.

References m_Angle.

Referenced by CCalcRadialTree::operator()(), Render(), IPhyloTreeRender::x_AddCollapsedGeomNode(), and IPhyloTreeRender::x_AddCollapsedTextureNode().

◆ GetBioTreeFeatureList() [1/2]

CBioTreeFeatureList & CPhyloNodeData::GetBioTreeFeatureList ( )

Definition at line 606 of file phylo_tree_node.cpp.

References m_Features.

Referenced by CPhyloTreeWidget::OnExportSelection(), visitor_paste_subtree::operator()(), CVisitorAccumulateProperty::operator()(), and CPhyloSelectionSetMgr::SetSelectionSetProperty().

◆ GetBioTreeFeatureList() [2/2]

const CBioTreeFeatureList& CPhyloNodeData::GetBioTreeFeatureList ( ) const

inline

Definition at line 157 of file phylo_tree_node.hpp.

References m_Features.

◆ GetBoundedDisplay()

CPhyloNodeData::TBoundingState CPhyloNodeData::GetBoundedDisplay ( ) const

Definition at line 322 of file phylo_tree_node.cpp.

References eBounded, eUnBounded, SExtendedNodeParms::m_Boundary, m_ExtendedParms, NULL, and x_HasExtendedParms().

Referenced by CCalcCircularTree::operator()(), CCalcBoundary::operator()(), CCalcRadialTree::operator()(), CCalcRectangularTree::operator()(), and CCalcSlantedTree::operator()().

◆ GetBoundingRect()

void CPhyloNodeData::GetBoundingRect	(	const CVect2< float > &	scale,
		CVect2< float > &	lower_left,
		CVect2< float > &	upper_right,
		bool	rotated = `false`
	)

Find the rectangle for the node and label combined given the current zoom level (scale)

Definition at line 1162 of file phylo_tree_node.cpp.

References abs, GetLabelRect(), m_NodeOffset, m_NodeSize, max(), min(), CVect2< T >::X(), X(), CVect2< T >::Y(), and Y().

◆ GetClusterColorIdx()

short CPhyloNodeData::GetClusterColorIdx ( ) const

inline

Definition at line 229 of file phylo_tree_node.hpp.

References m_ClusterColorIdx.

◆ GetClusterID()

TClusterID CPhyloNodeData::GetClusterID ( void ) const

inline

Definition at line 175 of file phylo_tree_node.hpp.

References m_ClusterID.

Referenced by Sync().

◆ GetColoration()

CPhyloTreeScheme::TPhyloTreeColors CPhyloNodeData::GetColoration ( ) const

inline

Definition at line 219 of file phylo_tree_node.hpp.

References m_ColorType.

◆ GetDefaultNodeSize()

float CPhyloNodeData::GetDefaultNodeSize ( const CPhyloTreeScheme * scheme ) const

Get modified node size - includes scaled (BOA) size.

Definition at line 1188 of file phylo_tree_node.cpp.

References eHideChildren, CPhyloTreeScheme::GetBoaNodes(), GetDisplayChildren(), CPhyloTreeScheme::GetLeafNodeSize(), CPhyloTreeScheme::GetMaxNodeSize(), CPhyloTreeScheme::GetMaxNumChildren(), CPhyloTreeScheme::GetMinNodeSize(), CPhyloTreeScheme::GetMinNumChildren(), GetNodeSize(), CPhyloTreeScheme::GetNodeSize(), GetNumLeaves(), GetNumLeavesEx(), log, and min().

Referenced by IPhyloTreeRender::GetDefaultNodeSize(), GetNodeLayoutSize(), GetNodePosEx(), and GetNodeWidthScaler().

◆ GetDisplayChildren()

TDisplayChildren CPhyloNodeData::GetDisplayChildren ( ) const

inline

Definition at line 222 of file phylo_tree_node.hpp.

References eHideChildren, eShowChildren, and m_Children.

Referenced by CPhyloTreeNode::Expanded(), GetDefaultNodeSize(), GetNodeOverhang(), GetNodePosEx(), GetNodeWidthScaler(), and Sync().

◆ GetDisplayLabel()

const string& CPhyloNodeData::GetDisplayLabel ( ) const

inline

Definition at line 371 of file phylo_tree_node.hpp.

References m_Text.

◆ GetDistance()

TDistance CPhyloNodeData::GetDistance ( ) const

inline

Definition at line 184 of file phylo_tree_node.hpp.

References fabs, and m_Distance.

Referenced by CCalcCircularTree::operator()(), CPhyloTreeDataSource::ReRootEdge(), CPhyloTreeDataSource::ReRootMidpoint(), Sync(), CPhyloTreeMaxDirectChildDist::x_OnStep(), CPhyloTreeMaxChildDist::x_OnStep(), CPhyloTreeDistFromRoot::x_OnStep(), and CPhyloTreeMidpointDist::x_OnStep().

◆ GetDistanceFromRoot()

TDistance CPhyloNodeData::GetDistanceFromRoot ( ) const

inline

Definition at line 187 of file phylo_tree_node.hpp.

References fabs, and m_DistanceFromRoot.

◆ GetDrawAngle()

float CPhyloNodeData::GetDrawAngle ( void ) const

inline

Definition at line 270 of file phylo_tree_node.hpp.

References m_DrawAngle.

◆ GetEdgeColorGradient()

bool CPhyloNodeData::GetEdgeColorGradient ( ) const

inline

Definition at line 379 of file phylo_tree_node.hpp.

References m_EdgeColorGradient.

◆ GetEdgeScore()

float CPhyloNodeData::GetEdgeScore ( ) const

inline

Definition at line 273 of file phylo_tree_node.hpp.

References m_EdgeScore.

Referenced by IPhyloTreeRender::GetEdgeColor().

◆ GetId()

TID CPhyloNodeData::GetId ( void ) const

inline

Definition at line 181 of file phylo_tree_node.hpp.

References m_ID.

Referenced by CTreeQueryExec::EvalNext(), CPhyloTreeDataSource::ExecuteStringQuery(), CPhyloTreeNode::IsUnused(), visitor_copy_subtree::operator()(), visitor_paste_subtree::operator()(), and IPhyloTreeRender::TTHH_NeedTooltip().

◆ GetLabel()

const TLabel& CPhyloNodeData::GetLabel ( void ) const

inline

Definition at line 194 of file phylo_tree_node.hpp.

References m_Label.

Referenced by Sync().

◆ GetLabelBgColorIdx()

short CPhyloNodeData::GetLabelBgColorIdx ( )

inline

Definition at line 231 of file phylo_tree_node.hpp.

References m_LabelBgColorIdx.

◆ GetLabelFgColorIdx()

short CPhyloNodeData::GetLabelFgColorIdx ( ) const

inline

Definition at line 230 of file phylo_tree_node.hpp.

References m_LabelFgColorIdx.

◆ GetLabelRect() [1/3]

CGlRect<float> CPhyloNodeData::GetLabelRect ( ) const

inline

Definition at line 240 of file phylo_tree_node.hpp.

References m_LabelRect.

Referenced by GetBoundingRect(), GetLabelRect(), GetMinX(), GetRotatedTextBox(), GetRotatedTextPos(), GetTextOut(), CPhyloTreeWidget::IterateSelection(), PointInTextBox(), and Render().

◆ GetLabelRect() [2/3]

CGlRect< float > CPhyloNodeData::GetLabelRect	(	const CVect2< float > &	scale,
		bool	rotated
	)

Find the rectangle for the label in pixel coordinates, taking rotation into account.

Definition at line 1115 of file phylo_tree_node.cpp.

References a, CGlRect< T >::Bottom(), GetLabelRect(), CGlRect< T >::Left(), m_Angle, max(), min(), r(), CGlRect< T >::Right(), CGlRect< T >::SetBottom(), CGlRect< T >::SetLeft(), CGlRect< T >::SetRight(), CGlRect< T >::SetTop(), CGlRect< T >::Top(), CVect2< T >::X(), CGlPoint< T >::X(), CVect2< T >::Y(), and CGlPoint< T >::Y().

◆ GetLabelRect() [3/3]

void CPhyloNodeData::GetLabelRect	(	const CVect2< float > &	scale,
		CVect2< float > &	lower_left,
		CVect2< float > &	upper_right,
		bool	rotated = `false`
	)

Find the rectangle for the label given the current zoom level (scale)

Definition at line 1045 of file phylo_tree_node.cpp.

References GetLabelRect(), GetRotatedTextBox(), max(), min(), r(), CVect2< T >::X(), CVect4< T >::X(), X(), CVect2< T >::Y(), CVect4< T >::Y(), and Y().

◆ GetMarkerColors()

vector< CRgbaColor > & CPhyloNodeData::GetMarkerColors ( )

Definition at line 249 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_MarkerColors, and x_HasExtendedParms().

Referenced by InitFeatures().

◆ GetMarkerColorsAsString()

string CPhyloNodeData::GetMarkerColorsAsString ( )

Definition at line 307 of file phylo_tree_node.cpp.

References i, m_ExtendedParms, SExtendedNodeParms::m_MarkerColors, string, and x_HasExtendedParms().

◆ GetMarkerSize()

float CPhyloNodeData::GetMarkerSize ( ) const

Definition at line 257 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_MarkerSize, and x_HasExtendedParms().

◆ GetMaxChildDistance()

TDistance CPhyloNodeData::GetMaxChildDistance ( ) const

inline

Definition at line 190 of file phylo_tree_node.hpp.

References fabs, and m_MaxChildDistance.

◆ GetMinX()

float CPhyloNodeData::GetMinX ( const CVect2< float > & scale )

Return labels minimal X coordinate.

Definition at line 1183 of file phylo_tree_node.cpp.

References GetLabelRect(), CVect2< T >::X(), and X().

◆ GetNodeDisplayColor()

CRgbaColor CPhyloNodeData::GetNodeDisplayColor ( ) const

inline

Definition at line 383 of file phylo_tree_node.hpp.

References m_NodeColor.

◆ GetNodeDisplaySize()

float CPhyloNodeData::GetNodeDisplaySize ( ) const

inline

Definition at line 375 of file phylo_tree_node.hpp.

References m_NodeSize.

◆ GetNodeEdColorIdx()

short CPhyloNodeData::GetNodeEdColorIdx ( ) const

inline

Definition at line 227 of file phylo_tree_node.hpp.

References m_NodeEdColorIdx.

◆ GetNodeFgColorIdx()

short CPhyloNodeData::GetNodeFgColorIdx ( ) const

inline

Definition at line 228 of file phylo_tree_node.hpp.

References m_NodeFgColorIdx.

◆ GetNodeLayoutSize()

float CPhyloNodeData::GetNodeLayoutSize ( const CPhyloTreeScheme * scheme ) const

Get modified node size - use this instead of GetDefaultNodeSize when doing layout (doesn't go to 0 if leaf node size does) This is basically the height of the node for layout purposes.

Definition at line 1226 of file phylo_tree_node.cpp.

References GetDefaultNodeSize(), CPhyloTreeScheme::GetNodeSize(), max(), and ncbi::grid::netcache::search::fields::size.

Referenced by IPhyloTreeRender::GetNodeLayoutSize().

◆ GetNodeOffset()

CVect2<float> CPhyloNodeData::GetNodeOffset ( ) const

inline

Definition at line 243 of file phylo_tree_node.hpp.

References m_NodeOffset.

◆ GetNodeOverhang()

float CPhyloNodeData::GetNodeOverhang ( const CVect2< float > & scale ) const

Get extenstion of node beyond end of edge in pixels.

In circular views, this takes tfhe offset into the circle into account as well.

Definition at line 1272 of file phylo_tree_node.cpp.

References abs, eShowChildren, GetDisplayChildren(), CGlRect< T >::Left(), CVect2< T >::Length(), m_LabelRect, m_NodeOffset, m_NodePixelOffset, m_NodeWidth, min(), CGlRect< T >::Right(), CVect2< T >::X(), and CVect2< T >::Y().

Referenced by GetRotatedTextBox().

◆ GetNodePixelOffset()

CVect2<float> CPhyloNodeData::GetNodePixelOffset ( ) const

inline

Definition at line 246 of file phylo_tree_node.hpp.

References m_NodePixelOffset.

◆ GetNodePosEx()

CVect2< float > CPhyloNodeData::GetNodePosEx	(	const CVect3< float > &	scale,
		CPhyloTreeScheme *	scheme,
		float &	node_size,
		float	size_scaler = `1.0f`
	)		const

Get modified center of node position - this works for collapsed nodes in rotated layouts and with offsets between label and node.

Definition at line 683 of file phylo_tree_node.cpp.

References a, eShowChildren, GetDefaultNodeSize(), GetDisplayChildren(), GetScaledAngle(), m_Angle, m_NodeOffset, m_XY, CVect2< T >::X(), CVect3< T >::X(), CVect2< T >::Y(), and CVect3< T >::Y().

◆ GetNodeSize()

float CPhyloNodeData::GetNodeSize ( ) const

inline

Definition at line 264 of file phylo_tree_node.hpp.

References m_Size.

Referenced by GetDefaultNodeSize().

◆ GetNodeWidthScaler()

float CPhyloNodeData::GetNodeWidthScaler ( const CPhyloTreeScheme * scheme ) const

Get modified node width (length) for collapsed nodes. Default is 1.

Definition at line 1237 of file phylo_tree_node.cpp.

References eHideChildren, CPhyloTreeScheme::GetBoaNodes(), GetDefaultNodeSize(), GetDisplayChildren(), CPhyloTreeScheme::GetMaxBranchDist(), CPhyloTreeScheme::GetMaxNodeSize(), CPhyloTreeScheme::GetMaxNumChildren(), CPhyloTreeScheme::GetMinNodeSize(), CPhyloTreeScheme::GetMinNumChildren(), log, m_MaxChildDistance, and m_NodeWidth.

Referenced by CPhyloCircularCladogram::GetNodeLabelDist(), IPhyloTreeRender::GetNodeLabelDist(), IPhyloTreeRender::x_AddCollapsedGeomNode(), and IPhyloTreeRender::x_AddCollapsedTextureNode().

◆ GetNumClusters()

size_t CPhyloNodeData::GetNumClusters ( ) const

Return total # of applicable clusters - selection + m_ClusterID.

Definition at line 628 of file phylo_tree_node.cpp.

References HasSelClusters(), m_ClusterID, m_ExtendedParms, and SExtendedNodeParms::m_SelClusters.

◆ GetNumLeaves()

int CPhyloNodeData::GetNumLeaves ( ) const

inline

Definition at line 161 of file phylo_tree_node.hpp.

References m_NumLeaves.

Referenced by GetDefaultNodeSize(), and CPhyloTreeLabel::x_GenerateAutoLabel().

◆ GetNumLeavesEx()

int CPhyloNodeData::GetNumLeavesEx ( ) const

inline

Definition at line 164 of file phylo_tree_node.hpp.

References m_NumLeavesEx.

Referenced by CTreeGraphicsModel::EnableCircularLabelTrimming(), GetDefaultNodeSize(), and CCalcRadialTree::operator()().

◆ GetPamlCounter()

int CPhyloNodeData::GetPamlCounter ( ) const

inline

Definition at line 178 of file phylo_tree_node.hpp.

References m_PamlCounter.

◆ GetPrimaryCluster()

int CPhyloNodeData::GetPrimaryCluster ( ) const

With selection clusters a node may have multiple cluster ids.

Return highest-priority cluster (first selection cluster, if present, m_ClusterID otherwise)

Definition at line 616 of file phylo_tree_node.cpp.

References HasSelClusters(), m_ClusterID, m_ExtendedParms, and SExtendedNodeParms::m_SelClusters.

◆ GetRotatedTextBox()

CVect4< CVect2< float > > CPhyloNodeData::GetRotatedTextBox	(	const CVect3< float > &	scale,
		float &	angle,
		float	orig_angle = `0.0f`
	)		const

Return text box (m_LabelRect) rotated to align with radial edges.

Definition at line 942 of file phylo_tree_node.cpp.

References GetLabelRect(), GetNodeOverhang(), GetScaledAngle(), m_Angle, r(), result, CVect2< T >::Set(), CVect2< T >::X(), CVect3< T >::X(), X(), CGlPoint< T >::X(), CVect2< T >::Y(), CVect3< T >::Y(), Y(), and CGlPoint< T >::Y().

Referenced by GetLabelRect(), and RenderRotated().

◆ GetRotatedTextPos()

CVect2< float > CPhyloNodeData::GetRotatedTextPos	(	const CVect3< float > &	scale,
		float &	angle
	)		const

Return the text starting point rotated to align with radial edges.

Definition at line 977 of file phylo_tree_node.cpp.

References GetLabelRect(), GetScaledAngle(), m_Angle, r(), result, CVect2< T >::X(), CVect3< T >::X(), X(), CVect2< T >::Y(), CVect3< T >::Y(), and Y().

◆ GetScaledAngle()

float CPhyloNodeData::GetScaledAngle	(	const CVect3< float > &	scale,
		float	a,
		bool	for_label = `true`
	)		const

Utility to get screen rotation angle after scaling.

Definition at line 666 of file phylo_tree_node.cpp.

References a, CVect3< T >::X(), and CVect3< T >::Y().

Referenced by GetNodePosEx(), GetRotatedTextBox(), and GetRotatedTextPos().

◆ GetSelClusters()

CPhyloNodeData::TSelClusterIDs & CPhyloNodeData::GetSelClusters ( )

Definition at line 225 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_SelClusters, and x_HasExtendedParms().

Referenced by InitFeatures(), CPhyloSelectionSetMgr::SetSelectionSetProperty(), and Sync().

◆ GetSelectedState()

TSelectedState CPhyloNodeData::GetSelectedState ( ) const

inline

Definition at line 216 of file phylo_tree_node.hpp.

References m_Selected.

◆ GetSeqID()

const CRef<objects::CSeq_id>& CPhyloNodeData::GetSeqID ( ) const

inline

Definition at line 153 of file phylo_tree_node.hpp.

References m_SeqID.

◆ GetSubtreeBoundary()

CSubtreeBoundary * CPhyloNodeData::GetSubtreeBoundary ( )

Gets current boundary or creates a new one if m_Boundary is NULL.

Definition at line 330 of file phylo_tree_node.cpp.

References SExtendedNodeParms::m_Boundary, m_ExtendedParms, NULL, and x_HasExtendedParms().

Referenced by InitFeatures().

◆ GetTextDisplayColor()

CRgbaColor CPhyloNodeData::GetTextDisplayColor ( ) const

inline

Definition at line 387 of file phylo_tree_node.hpp.

References m_FgColor.

◆ GetTextOut()

CVect2< float > CPhyloNodeData::GetTextOut	(	CGlPane &	pane,
		const CGlTextureFont &	font,
		const CVect3< float > &	scale,
		bool	truncate_labels,
		string &	text_out
	)

Return the drawing position and (possibly truncated) text.

Definition at line 998 of file phylo_tree_node.cpp.

References GetLabelRect(), CGlPane::GetViewport(), m_Text, CGlPane::ProjectX(), r(), CGlTextureFont::Truncate(), CGlPane::UnProjectX(), CGlRect< T >::Width(), CVect2< T >::X(), CVect3< T >::X(), X(), CVect2< T >::Y(), CVect3< T >::Y(), and Y().

◆ GetVisible()

bool CPhyloNodeData::GetVisible ( void ) const

inline

Definition at line 367 of file phylo_tree_node.hpp.

References m_Visible.

◆ HasNodeMarker()

bool CPhyloNodeData::HasNodeMarker ( ) const

Definition at line 241 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_MarkerColors, and x_HasExtendedParms().

Referenced by InitFeatures().

◆ HasSelClusters()

bool CPhyloNodeData::HasSelClusters ( ) const

Definition at line 217 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_SelClusters, and x_HasExtendedParms().

Referenced by GetNumClusters(), GetPrimaryCluster(), InitFeatures(), and Sync().

◆ IDX() [1/2]

TIndex& CPhyloNodeData::IDX ( )

inline

Definition at line 213 of file phylo_tree_node.hpp.

References m_IDX.

Referenced by NodeIdxSort::operator()(), and CPhyloTreeLabel::x_GenerateAutoLabel().

◆ IDX() [2/2]

const TIndex& CPhyloNodeData::IDX ( ) const

inline

Definition at line 214 of file phylo_tree_node.hpp.

References m_IDX.

◆ Init()

void CPhyloNodeData::Init	(	const CBioTreeFeatureDictionary &	dict,
		CRgbaGradColorTable *	t
	)

Definition at line 532 of file phylo_tree_node.cpp.

References CBioTreeFeatureList::GetFeatureValue(), CSeqUtils::GetGIString(), CBioTreeFeatureDictionary::GetId(), InitFeatures(), m_Features, PHYLO_FEAT_SEQID, SetSeqID(), and t.

◆ InitFeatures()

void CPhyloNodeData::InitFeatures	(	const CBioTreeFeatureDictionary &	dict,
		CRgbaGradColorTable *	t
	)

Definition at line 385 of file phylo_tree_node.cpp.

References arr, CSubtreeBoundary::CreateShapes(), DeleteSubtreeBoundary(), EDGE_GRADIENT, eHideChildren, eShowChildren, NStr::fConvErr_NoThrow, CBioTreeFeatureList::GetFeatureValue(), CBioTreeFeatureDictionary::GetId(), GetMarkerColors(), GetSelClusters(), GetSubtreeBoundary(), HasNodeMarker(), HasSelClusters(), i, m_EdgeColorGradient, m_ExtendedParms, m_Features, SExtendedNodeParms::m_SelClusters, PHYLO_EDGE_COLOR, PHYLO_FEAT_CLUSTERID, PHYLO_FEAT_DIST, PHYLO_LABEL_BGCOLOR, PHYLO_LABEL_COLOR, PHYLO_NODE_BOUNDED, PHYLO_NODE_COLLAPSED, PHYLO_NODE_COLOR, PHYLO_NODE_MARKER, PHYLO_NODE_SIZE, PHYLO_SELECT_CLUSTERS, SetClusterID(), SetDisplayChildren(), SetDistance(), SetLabelBgColorIdx(), SetLabelColorIdx(), SetMarkerColors(), SetNodeEdgeColorIdx(), SetNodeFgColorIdx(), SetNodeSize(), ncbi::grid::netcache::search::fields::size, NStr::Split(), NStr::StringToDouble(), NStr::StringToInt(), t, and true.

Referenced by Init().

◆ operator=()

CPhyloNodeData & CPhyloNodeData::operator= ( const CPhyloNodeData & rhs )

Definition at line 166 of file phylo_tree_node.cpp.

References m_Angle, m_Children, m_ClusterColorIdx, m_ClusterID, m_ColorType, m_Distance, m_DistanceFromRoot, m_DrawAngle, m_EdgeColorGradient, m_ExtendedParms, m_Features, m_FgColor, m_ID, m_IDX, m_Label, m_LabelBgColorIdx, m_LabelFgColorIdx, m_LabelRect, m_MaxChildDistance, m_NodeColor, m_NodeEdColorIdx, m_NodeFgColorIdx, m_NodeOffset, m_NodePixelOffset, m_NodeWidth, m_NumLeaves, m_NumLeavesEx, m_PamlCounter, m_Selected, m_SeqID, m_Size, m_XY, and NULL.

◆ PointInTextBox()

bool CPhyloNodeData::PointInTextBox	(	const CVect2< float > &	scale,
		CVect2< float >	pt,
		bool	rotated = `false`
	)

Return true if pt is inside of this nodes text box.

Definition at line 1081 of file phylo_tree_node.cpp.

References a, GetLabelRect(), m_DrawAngle, r(), CVect2< T >::X(), X(), CVect2< T >::Y(), and Y().

◆ RemoveFeature()

void CPhyloNodeData::RemoveFeature	(	CBioTreeFeatureDictionary &	dict,
		const string &	name
	)

Definition at line 374 of file phylo_tree_node.cpp.

References CBioTreeFeatureDictionary::GetId(), CBioTreeFeatureDictionary::HasFeature(), m_Features, and CBioTreeFeatureList::RemoveFeature().

Referenced by CPhyloTreeNode::ExpandCollapse(), and Sync().

◆ Render()

void CPhyloNodeData::Render	(	const CGlPane &	pane,
		const CGlTextureFont &	font,
		CRgbaGradColorTable *	color_table,
		const CVect3< float > &	scale,
		bool	truncate_labels,
		TModelUnit	max_len = `-1.0f`
	)

Draw the label using scale to compute its offset from m_BasePos.

Definition at line 711 of file phylo_tree_node.cpp.

References IRender::Begin(), IRender::BlendFunc(), IRender::Color4fv(), IGlFont::eMetric_CharHeight, IRender::Enable(), IRender::End(), GetAngle(), CRgbaGradColorTable::GetColor(), CRgbaColor::GetColorArray(), GetGl(), GetLabelRect(), CGlTextureFont::GetMetric(), CGlPane::GetScaleX(), CGlPane::GetScaleY(), CGlPane::GetViewport(), m_AlreadyDrawn, m_FgColor, m_LabelBgColorIdx, m_Text, m_Visible, min(), IRender::PolygonMode(), CGlPane::ProjectX(), r(), SetDrawAngle(), CGlTextureFont::TextOut(), CGlTextureFont::TextWidth(), CGlTextureFont::Truncate(), IRender::Vertex2d(), CGlRect< T >::Width(), CVect3< T >::X(), X(), CVect3< T >::Y(), and Y().

◆ RenderRotated()

void CPhyloNodeData::RenderRotated	(	const CGlPane &	pane,
		const CGlTextureFont &	font,
		CRgbaGradColorTable *	color_table,
		const CVect3< float > &	scale,
		float	orig_angle,
		bool	truncate_labels
	)

Draw the label and rotate it to match m_Angle (radial text) This form does not support label truncation.

Definition at line 806 of file phylo_tree_node.cpp.

References IRender::Begin(), CGlTextureFont::BeginText(), IRender::BlendFunc(), IRender::Color4fv(), delta(), IRender::Enable(), IRender::End(), CGlTextureFont::EndText(), CRgbaGradColorTable::GetColor(), CRgbaColor::GetColorArray(), GetGl(), GetRotatedTextBox(), CGlPane::GetViewport(), CGlRect< T >::Height(), i, CVect2< T >::Length(), m_AlreadyDrawn, m_FgColor, m_LabelBgColorIdx, m_Text, m_Visible, max(), min(), IRender::PolygonMode(), CGlPane::Project(), CGlPane::ProjectX(), CGlPane::ProjectY(), SetDrawAngle(), CGlTextureFont::TextWidth(), CGlTextureFont::Truncate(), IRender::Vertex2f(), CGlRect< T >::Width(), CGlTextureFont::WriteText(), X(), CGlPoint< T >::X(), Y(), and CGlPoint< T >::Y().

◆ Set()

void CPhyloNodeData::Set	(	TID	x_id,
		TDistance	x_dist,
		const TLabel &	x_label
	)

inline

Definition at line 196 of file phylo_tree_node.hpp.

References m_Distance, m_ID, and m_Label.

Referenced by CPhyloTreeNode::CPhyloTreeNode().

◆ SetAlreadyDrawn()

void CPhyloNodeData::SetAlreadyDrawn ( bool b )

inline

Flag set after each drawing and cleared when rendering frame done.

Definition at line 390 of file phylo_tree_node.hpp.

References b, and m_AlreadyDrawn.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ SetAngle()

void CPhyloNodeData::SetAngle ( float angle )

inline

Definition at line 268 of file phylo_tree_node.hpp.

References m_Angle.

Referenced by CCalcSlantedTree::operator()().

◆ SetBioTreeFeatureList()

void CPhyloNodeData::SetBioTreeFeatureList ( const CBioTreeFeatureList & btcfl )

Definition at line 611 of file phylo_tree_node.cpp.

References m_Features.

◆ SetClusterColorIdx()

void CPhyloNodeData::SetClusterColorIdx ( short idx )

inline

Definition at line 235 of file phylo_tree_node.hpp.

References m_ClusterColorIdx.

◆ SetClusterID()

void CPhyloNodeData::SetClusterID ( TClusterID x_id )

inline

Definition at line 176 of file phylo_tree_node.hpp.

References m_ClusterID.

Referenced by InitFeatures().

◆ SetColoration()

void CPhyloNodeData::SetColoration ( CPhyloTreeScheme::TPhyloTreeColors ct )

inline

Definition at line 220 of file phylo_tree_node.hpp.

References m_ColorType.

◆ SetDisplayChildren()

void CPhyloNodeData::SetDisplayChildren ( TDisplayChildren show )

inline

Definition at line 223 of file phylo_tree_node.hpp.

References eShowChildren, and m_Children.

Referenced by CPhyloTreeNode::ExpandCollapse(), and InitFeatures().

◆ SetDisplayLabel()

void CPhyloNodeData::SetDisplayLabel ( const string & t )

inline

set/get label text

Definition at line 370 of file phylo_tree_node.hpp.

References m_Text, and t.

◆ SetDistance()

void CPhyloNodeData::SetDistance ( TDistance x_dist )

inline

Definition at line 185 of file phylo_tree_node.hpp.

References m_Distance.

Referenced by InitFeatures(), CPhyloTreeDataSource::ReRoot(), CPhyloTreeDataSource::ReRootEdge(), CPhyloTreeDataSource::ReRootMidpoint(), and CPhyloTree::x_ConvertUpstream().

◆ SetDistanceFromRoot()

void CPhyloNodeData::SetDistanceFromRoot ( TDistance x_dist )

inline

Definition at line 188 of file phylo_tree_node.hpp.

References m_DistanceFromRoot.

◆ SetDrawAngle()

void CPhyloNodeData::SetDrawAngle ( float angle )

inline

Definition at line 271 of file phylo_tree_node.hpp.

References m_DrawAngle.

Referenced by Render(), and RenderRotated().

◆ SetEdgeColorGradient()

void CPhyloNodeData::SetEdgeColorGradient ( bool g )

inline

Enable or disable gradient coloring of edges between nodes.

Definition at line 378 of file phylo_tree_node.hpp.

References g(), and m_EdgeColorGradient.

◆ SetEdgeScore()

void CPhyloNodeData::SetEdgeScore ( float s )

inline

Definition at line 274 of file phylo_tree_node.hpp.

References m_EdgeScore.

◆ SetFeature()

void CPhyloNodeData::SetFeature	(	CBioTreeFeatureDictionary &	dict,
		const string &	name,
		const string &	value
	)

Definition at line 350 of file phylo_tree_node.cpp.

References eUnknown, CBioTreeFeatureDictionary::GetId(), CBioTreeFeatureDictionary::HasFeature(), m_Features, MAX_PROPERTIES, NCBI_THROW, CBioTreeFeatureDictionary::Register(), CBioTreeFeatureList::SetFeature(), and rapidjson::value.

Referenced by CPhyloTreeNode::ExpandCollapse(), CPhyloTreeDataSource::NewNode(), CPhyloTreeDataSource::ReRootMidpoint(), and Sync().

◆ SetId()

void CPhyloNodeData::SetId ( TID x_id )

Definition at line 640 of file phylo_tree_node.cpp.

References m_ID.

Referenced by CPhyloTreeDataSource::Remove(), and IPhyloTreeFilter::x_OnStep().

◆ SetLabel()

void CPhyloNodeData::SetLabel ( const TLabel & x_label )

inline

Definition at line 193 of file phylo_tree_node.hpp.

References m_Label.

Referenced by CPhyloTreeNode::SetLabel().

◆ SetLabelBgColorIdx()

void CPhyloNodeData::SetLabelBgColorIdx ( short idx )

inline

Definition at line 237 of file phylo_tree_node.hpp.

References m_LabelBgColorIdx.

Referenced by InitFeatures().

◆ SetLabelColorIdx()

void CPhyloNodeData::SetLabelColorIdx ( short idx )

inline

Definition at line 236 of file phylo_tree_node.hpp.

References m_LabelFgColorIdx.

Referenced by InitFeatures().

◆ SetLabelRect()

void CPhyloNodeData::SetLabelRect ( const CGlRect< float > & r )

inline

Definition at line 239 of file phylo_tree_node.hpp.

References m_LabelRect, and r().

◆ SetMarkerColors()

void CPhyloNodeData::SetMarkerColors ( const string & str )

Definition at line 273 of file phylo_tree_node.cpp.

References color, NStr::fConvErr_NoThrow, m_ExtendedParms, SExtendedNodeParms::m_MarkerColors, SetMarkerSize(), str(), NStr::StringToDouble(), x_GetParameter(), and x_HasExtendedParms().

Referenced by InitFeatures().

◆ SetMarkerSize()

void CPhyloNodeData::SetMarkerSize ( float f )

Definition at line 265 of file phylo_tree_node.cpp.

References f, m_ExtendedParms, SExtendedNodeParms::m_MarkerSize, and x_HasExtendedParms().

Referenced by SetMarkerColors().

◆ SetMaxChildDistance()

void CPhyloNodeData::SetMaxChildDistance ( TDistance x_dist )

inline

Definition at line 191 of file phylo_tree_node.hpp.

References m_MaxChildDistance.

◆ SetNodeDisplayColor()

void CPhyloNodeData::SetNodeDisplayColor ( const CRgbaColor & c )

inline

Set/get node color.

Definition at line 382 of file phylo_tree_node.hpp.

References m_NodeColor.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ SetNodeDisplaySize()

void CPhyloNodeData::SetNodeDisplaySize ( float s )

inline

set/get node size (this is the result of GetDefaultNodeSize())

Definition at line 374 of file phylo_tree_node.hpp.

References m_NodeSize.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ SetNodeEdgeColorIdx()

void CPhyloNodeData::SetNodeEdgeColorIdx ( short idx )

inline

Definition at line 234 of file phylo_tree_node.hpp.

References m_NodeEdColorIdx.

Referenced by InitFeatures().

◆ SetNodeFgColorIdx()

void CPhyloNodeData::SetNodeFgColorIdx ( short idx )

inline

Definition at line 233 of file phylo_tree_node.hpp.

References m_NodeFgColorIdx.

Referenced by InitFeatures().

◆ SetNodeOffset()

void CPhyloNodeData::SetNodeOffset ( const CVect2< float > & o )

inline

Definition at line 242 of file phylo_tree_node.hpp.

References m_NodeOffset.

Referenced by IPhyloTreeRender::x_AddCollapsedGeomNode(), IPhyloTreeRender::x_AddCollapsedTextureNode(), and IPhyloTreeRender::x_RenderNodeVbo().

◆ SetNodePixelOffset()

void CPhyloNodeData::SetNodePixelOffset ( const CVect2< float > & o )

inline

Definition at line 245 of file phylo_tree_node.hpp.

References m_NodePixelOffset.

◆ SetNodeSize()

void CPhyloNodeData::SetNodeSize ( float x_sz )

inline

Definition at line 265 of file phylo_tree_node.hpp.

References m_Size.

Referenced by InitFeatures().

◆ SetNumLeaves()

void CPhyloNodeData::SetNumLeaves ( int x_ln )

inline

Definition at line 162 of file phylo_tree_node.hpp.

References m_NumLeaves.

◆ SetNumLeavesEx()

void CPhyloNodeData::SetNumLeavesEx ( int x_ln )

inline

Definition at line 165 of file phylo_tree_node.hpp.

References m_NumLeavesEx.

◆ SetPamlCounter()

void CPhyloNodeData::SetPamlCounter ( int x_ctr )

inline

Definition at line 179 of file phylo_tree_node.hpp.

References m_PamlCounter.

◆ SetSelClusters()

void CPhyloNodeData::SetSelClusters ( const TSelClusterIDs & sc )

Definition at line 233 of file phylo_tree_node.cpp.

References m_ExtendedParms, SExtendedNodeParms::m_SelClusters, and x_HasExtendedParms().

◆ SetSelectedState()

void CPhyloNodeData::SetSelectedState ( TSelectedState x_state )

inline

Definition at line 217 of file phylo_tree_node.hpp.

References m_Selected.

◆ SetSeqID()

void CPhyloNodeData::SetSeqID ( objects::CSeq_id * sid )

inline

Definition at line 154 of file phylo_tree_node.hpp.

References m_SeqID, and CRef< C, Locker >::Reset().

Referenced by Init().

◆ SetTextDisplayColor()

void CPhyloNodeData::SetTextDisplayColor ( const CRgbaColor & c )

inline

Set/get text color.

Definition at line 386 of file phylo_tree_node.hpp.

References m_FgColor.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ SetVisible()

void CPhyloNodeData::SetVisible ( bool b )

Flag to renderer to determine whether to draw label.

Definition at line 1178 of file phylo_tree_node.cpp.

References b, and m_Visible.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ Sync()

void CPhyloNodeData::Sync ( CBioTreeFeatureDictionary & dict )

◆ X() [1/2]

float& CPhyloNodeData::X ( void )

inline

Definition at line 206 of file phylo_tree_node.hpp.

References m_XY, and CVect2< T >::X().

Referenced by GetBoundingRect(), GetLabelRect(), GetMinX(), GetRotatedTextBox(), GetRotatedTextPos(), GetTextOut(), CCalcRadialTree::operator()(), CDrawRadialTreeVbo::operator()(), CCalcSlantedTree::operator()(), CDrawSlantedTreeVbo::operator()(), PointInTextBox(), Render(), and RenderRotated().

◆ X() [2/2]

float CPhyloNodeData::X ( void ) const

inline

Definition at line 210 of file phylo_tree_node.hpp.

References m_XY, and CVect2< T >::X().

◆ x_GetParameter()

string CPhyloNodeData::x_GetParameter	(	const string &	features,
		const string &	parm
	)

protected

Definition at line 645 of file phylo_tree_node.cpp.

References NStr::ToLower().

Referenced by SetMarkerColors().

◆ x_HasExtendedParms()

bool CPhyloNodeData::x_HasExtendedParms ( ) const

inlineprotected

Definition at line 395 of file phylo_tree_node.hpp.

References m_ExtendedParms, and NULL.

Referenced by DeleteSubtreeBoundary(), GetBoundedDisplay(), GetMarkerColors(), GetMarkerColorsAsString(), GetMarkerSize(), GetSelClusters(), GetSubtreeBoundary(), HasNodeMarker(), HasSelClusters(), SetMarkerColors(), SetMarkerSize(), and SetSelClusters().

◆ XY() [1/2]

TPoint& CPhyloNodeData::XY ( )

inline

Definition at line 205 of file phylo_tree_node.hpp.

References m_XY.

Referenced by CPhyloTreeWidget::RedrawDataSource(), and CPhyloTreeWidget::SendEditEvent().

◆ XY() [2/2]

TPoint CPhyloNodeData::XY ( ) const

inline

Definition at line 209 of file phylo_tree_node.hpp.

References m_XY.

◆ Y() [1/2]

float& CPhyloNodeData::Y ( void )

inline

Definition at line 207 of file phylo_tree_node.hpp.

References m_XY, and CVect2< T >::Y().

Referenced by GetBoundingRect(), GetLabelRect(), GetRotatedTextBox(), GetRotatedTextPos(), GetTextOut(), CCalcRadialTree::operator()(), CDrawRadialTreeVbo::operator()(), CCalcSlantedTree::operator()(), CDrawSlantedTreeVbo::operator()(), PointInTextBox(), Render(), and RenderRotated().

◆ Y() [2/2]

float CPhyloNodeData::Y ( void ) const

inline

Definition at line 211 of file phylo_tree_node.hpp.

References m_XY, and CVect2< T >::Y().

Member Data Documentation

◆ m_AlreadyDrawn

bool CPhyloNodeData::m_AlreadyDrawn

protected

Text is alpha-blended so we add a flag to prevent drawing multiple times.

Definition at line 486 of file phylo_tree_node.hpp.

Referenced by GetAlreadyDrawn(), Render(), RenderRotated(), and SetAlreadyDrawn().

◆ m_Angle

float CPhyloNodeData::m_Angle

protected

Definition at line 423 of file phylo_tree_node.hpp.

Referenced by GetAngle(), GetLabelRect(), GetNodePosEx(), GetRotatedTextBox(), GetRotatedTextPos(), operator=(), and SetAngle().

◆ m_Children

bool CPhyloNodeData::m_Children

protected

expand-collapse state (expanded==true)

Definition at line 482 of file phylo_tree_node.hpp.

Referenced by GetDisplayChildren(), operator=(), and SetDisplayChildren().

◆ m_ClusterColorIdx

short CPhyloNodeData::m_ClusterColorIdx

protected

Definition at line 472 of file phylo_tree_node.hpp.

Referenced by GetClusterColorIdx(), operator=(), and SetClusterColorIdx().

◆ m_ClusterID

TClusterID CPhyloNodeData::m_ClusterID

protected

Definition at line 409 of file phylo_tree_node.hpp.

Referenced by GetClusterID(), GetNumClusters(), GetPrimaryCluster(), operator=(), and SetClusterID().

◆ m_ColorType

CPhyloTreeScheme::TPhyloTreeColors CPhyloNodeData::m_ColorType

protected

Definition at line 442 of file phylo_tree_node.hpp.

Referenced by GetColoration(), operator=(), and SetColoration().

◆ m_Distance

TDistance CPhyloNodeData::m_Distance

protected

Definition at line 413 of file phylo_tree_node.hpp.

Referenced by GetDistance(), operator=(), Set(), and SetDistance().

◆ m_DistanceFromRoot

TDistance CPhyloNodeData::m_DistanceFromRoot

protected

Definition at line 415 of file phylo_tree_node.hpp.

Referenced by GetDistanceFromRoot(), operator=(), and SetDistanceFromRoot().

◆ m_DrawAngle

float CPhyloNodeData::m_DrawAngle

protected

Definition at line 426 of file phylo_tree_node.hpp.

Referenced by GetDrawAngle(), operator=(), PointInTextBox(), and SetDrawAngle().

◆ m_EdgeColorGradient

bool CPhyloNodeData::m_EdgeColorGradient

protected

Controls use of gradient coloring for edges - if false, edges will be a single color, if true the edge will transition from child to parent color.

Definition at line 480 of file phylo_tree_node.hpp.

Referenced by GetEdgeColorGradient(), InitFeatures(), operator=(), and SetEdgeColorGradient().

◆ m_EdgeScore

float CPhyloNodeData::m_EdgeScore

protected

Definition at line 430 of file phylo_tree_node.hpp.

Referenced by GetEdgeScore(), and SetEdgeScore().

◆ m_ExtendedParms

SExtendedNodeParms* CPhyloNodeData::m_ExtendedParms

protected

Definition at line 445 of file phylo_tree_node.hpp.

Referenced by DeleteSubtreeBoundary(), GetBoundedDisplay(), GetMarkerColors(), GetMarkerColorsAsString(), GetMarkerSize(), GetNumClusters(), GetPrimaryCluster(), GetSelClusters(), GetSubtreeBoundary(), HasNodeMarker(), HasSelClusters(), InitFeatures(), operator=(), SetMarkerColors(), SetMarkerSize(), SetSelClusters(), x_HasExtendedParms(), and ~CPhyloNodeData().

◆ m_Features

CBioTreeFeatureList CPhyloNodeData::m_Features

protected

Definition at line 398 of file phylo_tree_node.hpp.

Referenced by GetBioTreeFeatureList(), Init(), InitFeatures(), operator=(), RemoveFeature(), SetBioTreeFeatureList(), and SetFeature().

◆ m_FgColor

CRgbaColor CPhyloNodeData::m_FgColor

protected

Current text color.

Definition at line 450 of file phylo_tree_node.hpp.

Referenced by GetTextDisplayColor(), operator=(), Render(), RenderRotated(), and SetTextDisplayColor().

◆ m_ID

TID CPhyloNodeData::m_ID

protected

Definition at line 411 of file phylo_tree_node.hpp.

Referenced by GetId(), operator=(), Set(), and SetId().

◆ m_IDX

TIndex CPhyloNodeData::m_IDX

protected

Definition at line 421 of file phylo_tree_node.hpp.

Referenced by IDX(), and operator=().

◆ m_Label

TLabel CPhyloNodeData::m_Label

protected

Full label.

Definition at line 453 of file phylo_tree_node.hpp.

Referenced by GetLabel(), operator=(), Set(), and SetLabel().

◆ m_LabelBgColorIdx

short CPhyloNodeData::m_LabelBgColorIdx

protected

Definition at line 476 of file phylo_tree_node.hpp.

Referenced by GetLabelBgColorIdx(), operator=(), Render(), RenderRotated(), and SetLabelBgColorIdx().

◆ m_LabelFgColorIdx

short CPhyloNodeData::m_LabelFgColorIdx

protected

Label color.

Definition at line 475 of file phylo_tree_node.hpp.

Referenced by GetLabelFgColorIdx(), operator=(), and SetLabelColorIdx().

◆ m_LabelRect

CGlRect<float> CPhyloNodeData::m_LabelRect

protected

Definition at line 433 of file phylo_tree_node.hpp.

Referenced by GetLabelRect(), GetNodeOverhang(), operator=(), and SetLabelRect().

◆ m_MaxChildDistance

TDistance CPhyloNodeData::m_MaxChildDistance

protected

Definition at line 417 of file phylo_tree_node.hpp.

Referenced by GetMaxChildDistance(), GetNodeWidthScaler(), operator=(), and SetMaxChildDistance().

◆ m_NodeColor

CRgbaColor CPhyloNodeData::m_NodeColor

protected

Current node color.

Definition at line 448 of file phylo_tree_node.hpp.

Referenced by GetNodeDisplayColor(), operator=(), and SetNodeDisplayColor().

◆ m_NodeEdColorIdx

short CPhyloNodeData::m_NodeEdColorIdx

protected

Node colors defined by scheme.

Definition at line 468 of file phylo_tree_node.hpp.

Referenced by GetNodeEdColorIdx(), operator=(), and SetNodeEdgeColorIdx().

◆ m_NodeFgColorIdx

short CPhyloNodeData::m_NodeFgColorIdx

protected

Definition at line 469 of file phylo_tree_node.hpp.

Referenced by GetNodeFgColorIdx(), operator=(), and SetNodeFgColorIdx().

◆ m_NodeOffset

CVect2<float> CPhyloNodeData::m_NodeOffset

protected

Definition at line 436 of file phylo_tree_node.hpp.

Referenced by GetBoundingRect(), GetNodeOffset(), GetNodeOverhang(), GetNodePosEx(), operator=(), and SetNodeOffset().

◆ m_NodePixelOffset

CVect2<float> CPhyloNodeData::m_NodePixelOffset

protected

Pixel offset to apply the node.

Definition at line 438 of file phylo_tree_node.hpp.

Referenced by GetNodeOverhang(), GetNodePixelOffset(), operator=(), and SetNodePixelOffset().

◆ m_NodeSize

float CPhyloNodeData::m_NodeSize

protected

Scaled node size.

Definition at line 461 of file phylo_tree_node.hpp.

Referenced by GetBoundingRect(), GetNodeDisplaySize(), and SetNodeDisplaySize().

◆ m_NodeWidth

float CPhyloNodeData::m_NodeWidth

mutableprotected

This is computed by GetNodeWidthScaler(..) for collapsed nodes and we need to hang onto it for node label positioning.

Definition at line 465 of file phylo_tree_node.hpp.

Referenced by GetNodeOverhang(), GetNodeWidthScaler(), and operator=().

◆ m_NumLeaves

int CPhyloNodeData::m_NumLeaves

protected

Definition at line 401 of file phylo_tree_node.hpp.

Referenced by GetNumLeaves(), operator=(), and SetNumLeaves().

◆ m_NumLeavesEx

int CPhyloNodeData::m_NumLeavesEx

protected

Definition at line 403 of file phylo_tree_node.hpp.

Referenced by GetNumLeavesEx(), operator=(), and SetNumLeavesEx().

◆ m_PamlCounter

int CPhyloNodeData::m_PamlCounter

protected

Definition at line 406 of file phylo_tree_node.hpp.

Referenced by GetPamlCounter(), operator=(), and SetPamlCounter().

◆ m_Selected

TSelectedState CPhyloNodeData::m_Selected

protected

Definition at line 441 of file phylo_tree_node.hpp.

Referenced by GetSelectedState(), operator=(), and SetSelectedState().

◆ m_SeqID

CRef<objects::CSeq_id> CPhyloNodeData::m_SeqID

protected

Definition at line 397 of file phylo_tree_node.hpp.

Referenced by GetSeqID(), operator=(), and SetSeqID().

◆ m_Size

float CPhyloNodeData::m_Size

protected

Definition at line 458 of file phylo_tree_node.hpp.

Referenced by GetNodeSize(), operator=(), and SetNodeSize().

◆ m_Text

string CPhyloNodeData::m_Text

protected

Text to render.

Definition at line 455 of file phylo_tree_node.hpp.

Referenced by GetDisplayLabel(), GetTextOut(), Render(), RenderRotated(), and SetDisplayLabel().

◆ m_Visible

bool CPhyloNodeData::m_Visible

protected

True if node is visible.

Definition at line 484 of file phylo_tree_node.hpp.

Referenced by GetVisible(), Render(), RenderRotated(), and SetVisible().

◆ m_XY

TPoint CPhyloNodeData::m_XY

protected

Definition at line 420 of file phylo_tree_node.hpp.

Referenced by GetNodePosEx(), operator=(), X(), XY(), and Y().

◆ TNoColor

const CPhyloNodeData::TColor CPhyloNodeData::TNoColor = ""

static

Definition at line 112 of file phylo_tree_node.hpp.

The documentation for this class was generated from the following files:

include/gui/widgets/phylo_tree/phylo_tree_node.hpp
src/gui/widgets/phylo_tree/phylo_tree_node.cpp

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

◆ TClusterID

◆ TColor

◆ TDistance

◆ TID

◆ TIndex

◆ TLabel

◆ TNodeFeaturesType

◆ TPoint

◆ TSelClusterIDs

Member Enumeration Documentation

◆ TBoundingState

◆ TDisplayChildren

◆ TSelectedState

Constructor & Destructor Documentation

◆ CPhyloNodeData() [1/2]

◆ CPhyloNodeData() [2/2]

◆ ~CPhyloNodeData()

Member Function Documentation

◆ DeleteSubtreeBoundary()

◆ GetAlreadyDrawn()

◆ GetAngle()

◆ GetBioTreeFeatureList() [1/2]

◆ GetBioTreeFeatureList() [2/2]

◆ GetBoundedDisplay()

◆ GetBoundingRect()

◆ GetClusterColorIdx()

◆ GetClusterID()

◆ GetColoration()

◆ GetDefaultNodeSize()

◆ GetDisplayChildren()

◆ GetDisplayLabel()

◆ GetDistance()

◆ GetDistanceFromRoot()

◆ GetDrawAngle()

◆ GetEdgeColorGradient()

◆ GetEdgeScore()

◆ GetId()

◆ GetLabel()

◆ GetLabelBgColorIdx()

◆ GetLabelFgColorIdx()

◆ GetLabelRect() [1/3]

◆ GetLabelRect() [2/3]

◆ GetLabelRect() [3/3]

◆ GetMarkerColors()

◆ GetMarkerColorsAsString()

◆ GetMarkerSize()

◆ GetMaxChildDistance()

◆ GetMinX()

◆ GetNodeDisplayColor()

◆ GetNodeDisplaySize()

◆ GetNodeEdColorIdx()

◆ GetNodeFgColorIdx()

◆ GetNodeLayoutSize()

◆ GetNodeOffset()

◆ GetNodeOverhang()

◆ GetNodePixelOffset()

◆ GetNodePosEx()

◆ GetNodeSize()

◆ GetNodeWidthScaler()

◆ GetNumClusters()

◆ GetNumLeaves()

◆ GetNumLeavesEx()

◆ GetPamlCounter()

◆ GetPrimaryCluster()

◆ GetRotatedTextBox()

◆ GetRotatedTextPos()

◆ GetScaledAngle()

◆ GetSelClusters()

◆ GetSelectedState()

◆ GetSeqID()

◆ GetSubtreeBoundary()

◆ GetTextDisplayColor()

◆ GetTextOut()