Search Toolkit Book for CSeq_id_Other_Tree

#include "seq_id_tree.hpp"
(Private to src/objects/seq.)

Inheritance diagram for CSeq_id_Other_Tree:

Collaboration diagram for CSeq_id_Other_Tree:

Public Member Functions
	CSeq_id_Other_Tree (CSeq_id_Mapper *mapper)

Public Member Functions inherited from CSeq_id_Textseq_Tree
	CSeq_id_Textseq_Tree (CSeq_id_Mapper *mapper, CSeq_id::E_Choice type)

	~CSeq_id_Textseq_Tree (void)

virtual bool	Empty (void) const

virtual CSeq_id_Handle	FindInfo (const CSeq_id &id) const

virtual CSeq_id_Handle	FindOrCreate (const CSeq_id &id)

virtual bool	HaveMatch (const CSeq_id_Handle &id) const

virtual void	FindMatch (const CSeq_id_Handle &id, TSeq_id_MatchList &id_list) const

virtual void	FindMatchStr (const string &sid, TSeq_id_MatchList &id_list) const

virtual bool	Match (const CSeq_id_Handle &h1, const CSeq_id_Handle &h2) const

virtual bool	IsBetterVersion (const CSeq_id_Handle &h1, const CSeq_id_Handle &h2) const

virtual bool	HaveReverseMatch (const CSeq_id_Handle &id) const

virtual void	FindReverseMatch (const CSeq_id_Handle &id, TSeq_id_MatchList &id_list)

virtual size_t	Dump (CNcbiOstream &out, CSeq_id::E_Choice type, int details) const

Public Member Functions inherited from CSeq_id_Which_Tree
	CSeq_id_Which_Tree (CSeq_id_Mapper *mapper)

virtual	~CSeq_id_Which_Tree (void)

virtual CSeq_id_Handle	GetGiHandle (TGi gi)

virtual void	DropInfo (const CSeq_id_Info *info)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Additional Inherited Members
Public Types inherited from CSeq_id_Textseq_Tree
typedef CTextseq_id::TVersion	TVersion

Public Types inherited from CSeq_id_Which_Tree
typedef set< CSeq_id_Handle >	TSeq_id_MatchList

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CSeq_id_Which_Tree
static void	Initialize (CSeq_id_Mapper *mapper, vector< CRef< CSeq_id_Which_Tree > > &v)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Types inherited from CSeq_id_Which_Tree
typedef CSeq_id_Info::TPacked	TPacked

typedef CFastMutex	TTreeLock

typedef TTreeLock::TReadLockGuard	TReadLockGuard

typedef TTreeLock::TWriteLockGuard	TWriteLockGuard

Protected Member Functions inherited from CSeq_id_Textseq_Tree
virtual void	x_Unindex (const CSeq_id_Info *info)

virtual bool	x_Check (const CSeq_id::E_Choice &type) const

virtual bool	x_Check (const CSeq_id &id) const

const CTextseq_id &	x_Get (const CSeq_id &id) const

CSeq_id_Textseq_PlainInfo *	x_FindStrInfo (CSeq_id::E_Choice type, const CTextseq_id &tid) const

bool	x_GetVersion (TVersion &version, const CSeq_id_Handle &id) const

Protected Member Functions inherited from CSeq_id_Which_Tree
CSeq_id_Info *	CreateInfo (CSeq_id::E_Choice type)

CSeq_id_Info *	CreateInfo (const CSeq_id &id)

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Static Protected Member Functions inherited from CSeq_id_Which_Tree
static const CSeq_id_Info *	GetInfo (const CSeq_id_Handle &id)

static const CSeq_id *	GetSeqId (const CSeq_id_Info *info)

Protected Attributes inherited from CSeq_id_Which_Tree
TTreeLock	m_TreeLock

CSeq_id_Mapper *	m_Mapper

Detailed Description

Definition at line 696 of file seq_id_tree.hpp.

Constructor & Destructor Documentation

◆ CSeq_id_Other_Tree()

CSeq_id_Other_Tree::CSeq_id_Other_Tree ( CSeq_id_Mapper * mapper )

Definition at line 1779 of file seq_id_tree.cpp.

The documentation for this class was generated from the following files:

src/objects/seq/seq_id_tree.hpp
src/objects/seq/seq_id_tree.cpp

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CSeq_id_Other_Tree()