Search Toolkit Book for CStatistics
#include <objects/blastxml/Statistics.hpp>
Inheritance diagram for CStatistics:
Collaboration diagram for CStatistics:
Public Member Functions | |
| CStatistics (void) | |
| ~CStatistics (void) | |
| CStatistics (void) | |
| ~CStatistics (void) | |
| Public Member Functions inherited from CStatistics_Base | |
| CStatistics_Base (void) | |
| virtual | ~CStatistics_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetDb_num (void) const |
| Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More... | |
| bool | CanGetDb_num (void) const |
| Check if it is safe to call GetDb_num method. More... | |
| void | ResetDb_num (void) |
| Reset Db_num data member. More... | |
| TDb_num | GetDb_num (void) const |
| Get the Db_num member data. More... | |
| void | SetDb_num (TDb_num value) |
| Assign a value to Db_num data member. More... | |
| TDb_num & | SetDb_num (void) |
| Assign a value to Db_num data member. More... | |
| bool | IsSetDb_len (void) const |
| Length of BLAST db Check if a value has been assigned to Db_len data member. More... | |
| bool | CanGetDb_len (void) const |
| Check if it is safe to call GetDb_len method. More... | |
| void | ResetDb_len (void) |
| Reset Db_len data member. More... | |
| TDb_len | GetDb_len (void) const |
| Get the Db_len member data. More... | |
| void | SetDb_len (TDb_len value) |
| Assign a value to Db_len data member. More... | |
| TDb_len & | SetDb_len (void) |
| Assign a value to Db_len data member. More... | |
| bool | IsSetHsp_len (void) const |
| Effective HSP length Check if a value has been assigned to Hsp_len data member. More... | |
| bool | CanGetHsp_len (void) const |
| Check if it is safe to call GetHsp_len method. More... | |
| void | ResetHsp_len (void) |
| Reset Hsp_len data member. More... | |
| THsp_len | GetHsp_len (void) const |
| Get the Hsp_len member data. More... | |
| void | SetHsp_len (THsp_len value) |
| Assign a value to Hsp_len data member. More... | |
| THsp_len & | SetHsp_len (void) |
| Assign a value to Hsp_len data member. More... | |
| bool | IsSetEff_space (void) const |
| Effective search space Check if a value has been assigned to Eff_space data member. More... | |
| bool | CanGetEff_space (void) const |
| Check if it is safe to call GetEff_space method. More... | |
| void | ResetEff_space (void) |
| Reset Eff_space data member. More... | |
| TEff_space | GetEff_space (void) const |
| Get the Eff_space member data. More... | |
| void | SetEff_space (TEff_space value) |
| Assign a value to Eff_space data member. More... | |
| TEff_space & | SetEff_space (void) |
| Assign a value to Eff_space data member. More... | |
| bool | IsSetKappa (void) const |
| Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More... | |
| bool | CanGetKappa (void) const |
| Check if it is safe to call GetKappa method. More... | |
| void | ResetKappa (void) |
| Reset Kappa data member. More... | |
| TKappa | GetKappa (void) const |
| Get the Kappa member data. More... | |
| void | SetKappa (TKappa value) |
| Assign a value to Kappa data member. More... | |
| TKappa & | SetKappa (void) |
| Assign a value to Kappa data member. More... | |
| bool | IsSetLambda (void) const |
| Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More... | |
| bool | CanGetLambda (void) const |
| Check if it is safe to call GetLambda method. More... | |
| void | ResetLambda (void) |
| Reset Lambda data member. More... | |
| TLambda | GetLambda (void) const |
| Get the Lambda member data. More... | |
| void | SetLambda (TLambda value) |
| Assign a value to Lambda data member. More... | |
| TLambda & | SetLambda (void) |
| Assign a value to Lambda data member. More... | |
| bool | IsSetEntropy (void) const |
| Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More... | |
| bool | CanGetEntropy (void) const |
| Check if it is safe to call GetEntropy method. More... | |
| void | ResetEntropy (void) |
| Reset Entropy data member. More... | |
| TEntropy | GetEntropy (void) const |
| Get the Entropy member data. More... | |
| void | SetEntropy (TEntropy value) |
| Assign a value to Entropy data member. More... | |
| TEntropy & | SetEntropy (void) |
| Assign a value to Entropy data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| CStatistics_Base (void) | |
| virtual | ~CStatistics_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetDb_num (void) const |
| Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More... | |
| bool | CanGetDb_num (void) const |
| Check if it is safe to call GetDb_num method. More... | |
| void | ResetDb_num (void) |
| Reset Db_num data member. More... | |
| TDb_num | GetDb_num (void) const |
| Get the Db_num member data. More... | |
| void | SetDb_num (TDb_num value) |
| Assign a value to Db_num data member. More... | |
| TDb_num & | SetDb_num (void) |
| Assign a value to Db_num data member. More... | |
| bool | IsSetDb_len (void) const |
| Length of BLAST db Check if a value has been assigned to Db_len data member. More... | |
| bool | CanGetDb_len (void) const |
| Check if it is safe to call GetDb_len method. More... | |
| void | ResetDb_len (void) |
| Reset Db_len data member. More... | |
| TDb_len | GetDb_len (void) const |
| Get the Db_len member data. More... | |
| void | SetDb_len (TDb_len value) |
| Assign a value to Db_len data member. More... | |
| TDb_len & | SetDb_len (void) |
| Assign a value to Db_len data member. More... | |
| bool | IsSetHsp_len (void) const |
| Effective HSP length Check if a value has been assigned to Hsp_len data member. More... | |
| bool | CanGetHsp_len (void) const |
| Check if it is safe to call GetHsp_len method. More... | |
| void | ResetHsp_len (void) |
| Reset Hsp_len data member. More... | |
| THsp_len | GetHsp_len (void) const |
| Get the Hsp_len member data. More... | |
| void | SetHsp_len (THsp_len value) |
| Assign a value to Hsp_len data member. More... | |
| THsp_len & | SetHsp_len (void) |
| Assign a value to Hsp_len data member. More... | |
| bool | IsSetEff_space (void) const |
| Effective search space Check if a value has been assigned to Eff_space data member. More... | |
| bool | CanGetEff_space (void) const |
| Check if it is safe to call GetEff_space method. More... | |
| void | ResetEff_space (void) |
| Reset Eff_space data member. More... | |
| TEff_space | GetEff_space (void) const |
| Get the Eff_space member data. More... | |
| void | SetEff_space (TEff_space value) |
| Assign a value to Eff_space data member. More... | |
| TEff_space & | SetEff_space (void) |
| Assign a value to Eff_space data member. More... | |
| bool | IsSetKappa (void) const |
| Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More... | |
| bool | CanGetKappa (void) const |
| Check if it is safe to call GetKappa method. More... | |
| void | ResetKappa (void) |
| Reset Kappa data member. More... | |
| TKappa | GetKappa (void) const |
| Get the Kappa member data. More... | |
| void | SetKappa (TKappa value) |
| Assign a value to Kappa data member. More... | |
| TKappa & | SetKappa (void) |
| Assign a value to Kappa data member. More... | |
| bool | IsSetLambda (void) const |
| Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More... | |
| bool | CanGetLambda (void) const |
| Check if it is safe to call GetLambda method. More... | |
| void | ResetLambda (void) |
| Reset Lambda data member. More... | |
| TLambda | GetLambda (void) const |
| Get the Lambda member data. More... | |
| void | SetLambda (TLambda value) |
| Assign a value to Lambda data member. More... | |
| TLambda & | SetLambda (void) |
| Assign a value to Lambda data member. More... | |
| bool | IsSetEntropy (void) const |
| Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More... | |
| bool | CanGetEntropy (void) const |
| Check if it is safe to call GetEntropy method. More... | |
| void | ResetEntropy (void) |
| Reset Entropy data member. More... | |
| TEntropy | GetEntropy (void) const |
| Get the Entropy member data. More... | |
| void | SetEntropy (TEntropy value) |
| Assign a value to Entropy data member. More... | |
| TEntropy & | SetEntropy (void) |
| Assign a value to Entropy data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CStatistics_Base | Tparent |
| typedef CStatistics_Base | Tparent |
Private Member Functions | |
| CStatistics (const CStatistics &value) | |
| CStatistics & | operator= (const CStatistics &value) |
| CStatistics (const CStatistics &value) | |
| CStatistics & | operator= (const CStatistics &value) |
Additional Inherited Members | |
| Public Types inherited from CStatistics_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len , e_eff_space , e_kappa , e_lambda , e_entropy , e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len , e_eff_space , e_kappa , e_lambda , e_entropy } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len , e_eff_space , e_kappa , e_lambda , e_entropy , e__allMandatory = 0 , e_db_num , e_db_len , e_hsp_len , e_eff_space , e_kappa , e_lambda , e_entropy } |
| typedef int | TDb_num |
| typedef Int8 | TDb_len |
| typedef int | THsp_len |
| typedef double | TEff_space |
| typedef double | TKappa |
| typedef double | TLambda |
| typedef double | TEntropy |
| typedef Tparent::CMemberIndex< E_memberIndex, 8 > | TmemberIndex |
| typedef Int8 | TDb_num |
| typedef Int8 | TDb_len |
| typedef int | THsp_len |
| typedef Int8 | TEff_space |
| typedef double | TKappa |
| typedef double | TLambda |
| typedef double | TEntropy |
| typedef Tparent::CMemberIndex< E_memberIndex, 8 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CStatistics –.
Definition at line 65 of file Statistics.hpp.
The documentation for this class was generated from the following files:
- include/objects/blastxml/Statistics.hpp
- src/objects/blastxml/Statistics.cpp
