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CUser_object Class Reference

Represents ASN.1 type User-object defined in file general.asn

Search Toolkit Book for CUser_object

#include <objects/general/User_object.hpp>

+ Inheritance diagram for CUser_object:
+ Collaboration diagram for CUser_object:

Classes

class  CRefGeneTrackingAccession
 
class  CRefGeneTrackingException
 

Public Types

enum  EParseField { eParse_String , eParse_Number }
 how to interpret the value in the AddField() conversion functions below. More...
 
enum  ELabelContent { eType , eContent , eBoth }
 enum controlling what to return for a label this mirrors a request inside of feature::GetLabel() More...
 
enum  ECategory { eCategory_Unknown = -1 , eCategory_Experiment }
 enums for implicit typing of user objects More...
 
enum  EExperiment { eExperiment_Unknown = -1 , eExperiment_Sage }
 sub-category experiment More...
 
enum  EObjectType {
  eObjectType_Unknown = -1 , eObjectType_DBLink , eObjectType_StructuredComment , eObjectType_OriginalId ,
  eObjectType_Unverified , eObjectType_ValidationSuppression , eObjectType_Cleanup , eObjectType_AutodefOptions ,
  eObjectType_FileTrack , eObjectType_RefGeneTracking , eObjectType_Unreviewed
}
 Object Type. More...
 
enum  ERefGeneTrackingStatus {
  eRefGeneTrackingStatus_Error = -1 , eRefGeneTrackingStatus_NotSet , eRefGeneTrackingStatus_PREDICTED , eRefGeneTrackingStatus_PROVISIONAL ,
  eRefGeneTrackingStatus_INFERRED , eRefGeneTrackingStatus_VALIDATED , eRefGeneTrackingStatus_REVIEWED , eRefGeneTrackingStatus_PIPELINE ,
  eRefGeneTrackingStatus_WGS
}
 
typedef vector< CConstRef< CRefGeneTrackingAccession > > TRefGeneTrackingAccessions
 
- Public Types inherited from CUser_object_Base
enum class  E_memberIndex { e__allMandatory = 0 , e_class , e_type , e_data }
 
typedef string TClass
 
typedef CObject_id TType
 
typedef vector< CRef< CUser_field > > TData
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CUser_object (void)
 constructor More...
 
 ~CUser_object (void)
 destructor More...
 
CUser_objectAddField (const string &label, const string &value, EParseField parse=eParse_String)
 add a data field to the user object that holds a given value More...
 
CUser_objectAddField (const string &label, const char *value, EParseField parse=eParse_String)
 
CUser_objectAddField (const string &label, int value)
 
CUser_objectAddField (const string &label, Int8 value)
 
CUser_objectAddField (const string &label, double value)
 
CUser_objectAddField (const string &label, bool value)
 
CUser_objectAddField (const string &label, TGi value)
 
CUser_objectAddField (const string &label, const vector< string > &value)
 
CUser_objectAddField (const string &label, const vector< int > &value)
 
CUser_objectAddField (const string &label, const vector< double > &value)
 
CUser_objectAddField (const string &label, CUser_object &value)
 
CUser_objectAddField (const string &label, const vector< CRef< CUser_object > > &value)
 
CUser_objectAddField (const string &label, const vector< CRef< CUser_field > > &value)
 
const CUser_fieldGetField (const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const
 Access a named field in this user object. More...
 
CConstRef< CUser_fieldGetFieldRef (const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const
 
CUser_fieldSetField (const string &str, const string &delim=".", const string &obj_subtype=kEmptyStr, NStr::ECase use_case=NStr::eCase)
 Access a named field in this user object. More...
 
CRef< CUser_fieldSetFieldRef (const string &str, const string &delim=".", const string &obj_subtype=kEmptyStr, NStr::ECase use_case=NStr::eCase)
 
bool HasField (const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const
 Verify that a named field exists. More...
 
void GetLabel (string *label, ELabelContent mode=eContent) const
 Append a label to label. More...
 
ECategory GetCategory (void) const
 accessors: classify a given user object More...
 
EExperiment GetExperimentType (void) const
 sub-category accessors: More...
 
const CUser_objectGetExperiment (void) const
 
CUser_objectSetCategory (ECategory category)
 format a user object as a given type. More...
 
CUser_objectSetExperiment (EExperiment category)
 format a user object as a given type. More...
 
EObjectType GetObjectType () const
 
void SetObjectType (EObjectType obj_type)
 
bool IsDBLink () const
 
bool IsStructuredComment () const
 
bool IsOriginalId () const
 
bool IsUnverified () const
 
bool IsValidationSuppression () const
 
bool IsCleanup () const
 
bool IsAutodefOptions () const
 
bool IsFileTrack () const
 
bool IsRefGeneTracking () const
 
bool IsUnreviewed () const
 
bool IsUnverifiedOrganism () const
 
void AddUnverifiedOrganism ()
 
void RemoveUnverifiedOrganism ()
 
bool IsUnverifiedFeature () const
 
void AddUnverifiedFeature ()
 
void RemoveUnverifiedFeature ()
 
bool IsUnverifiedMisassembled () const
 
void AddUnverifiedMisassembled ()
 
void RemoveUnverifiedMisassembled ()
 
bool IsUnverifiedContaminant () const
 
void AddUnverifiedContaminant ()
 
void RemoveUnverifiedContaminant ()
 
bool IsUnreviewedUnannotated () const
 
void AddUnreviewedUnannotated ()
 
void RemoveUnreviewedUnannotated ()
 
void UpdateNcbiCleanup (int version)
 
bool RemoveNamedField (const string &field_name, NStr::ECase ecase=NStr::eCase)
 
void SetFileTrackURL (const string &url)
 
void SetFileTrackUploadId (const string &upload_id)
 
void SetRefGeneTrackingStatus (ERefGeneTrackingStatus status)
 
ERefGeneTrackingStatus GetRefGeneTrackingStatus () const
 
void ResetRefGeneTrackingStatus ()
 
bool IsSetRefGeneTrackingStatus () const
 
void SetRefGeneTrackingGenomicSource (const string &genomic_source)
 
const stringGetRefGeneTrackingGenomicSource () const
 
void ResetRefGeneTrackingGenomicSource ()
 
bool IsSetRefGeneTrackingGenomicSource () const
 
void SetRefGeneTrackingGenerated (bool val=true)
 
bool GetRefGeneTrackingGenerated () const
 
void ResetRefGeneTrackingGenerated ()
 
void SetRefGeneTrackingCollaborator (const string &collaborator)
 
const stringGetRefGeneTrackingCollaborator () const
 
void ResetRefGeneTrackingCollaborator ()
 
bool IsSetRefGeneTrackingCollaborator () const
 
void SetRefGeneTrackingCollaboratorURL (const string &collaborator_url)
 
const stringGetRefGeneTrackingCollaboratorURL () const
 
void ResetRefGeneTrackingCollaboratorURL ()
 
bool IsSetRefGeneTrackingCollaboratorURL () const
 
void SetRefGeneTrackingIdenticalTo (const CRefGeneTrackingAccession &accession)
 
CConstRef< CRefGeneTrackingAccessionGetRefGeneTrackingIdenticalTo () const
 
void ResetRefGeneTrackingIdenticalTo ()
 
bool IsSetRefGeneTrackingIdenticalTo () const
 
void SetRefGeneTrackingAssembly (const TRefGeneTrackingAccessions &acc_list)
 
TRefGeneTrackingAccessions GetRefGeneTrackingAssembly () const
 
void ResetRefGeneTrackingAssembly ()
 
bool IsSetRefGeneTrackingAssembly () const
 
- Public Member Functions inherited from CUser_object_Base
 CUser_object_Base (void)
 
virtual ~CUser_object_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetClass (void) const
 endeavor which designed this object Check if a value has been assigned to Class data member. More...
 
bool CanGetClass (void) const
 Check if it is safe to call GetClass method. More...
 
void ResetClass (void)
 Reset Class data member. More...
 
const TClassGetClass (void) const
 Get the Class member data. More...
 
void SetClass (const TClass &value)
 Assign a value to Class data member. More...
 
void SetClass (TClass &&value)
 
TClassSetClass (void)
 Assign a value to Class data member. More...
 
bool IsSetType (void) const
 type of object within class Check if a value has been assigned to Type data member. More...
 
bool CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void ResetType (void)
 Reset Type data member. More...
 
const TTypeGetType (void) const
 Get the Type member data. More...
 
void SetType (TType &value)
 Assign a value to Type data member. More...
 
TTypeSetType (void)
 Assign a value to Type data member. More...
 
bool IsSetData (void) const
 the object itself Check if a value has been assigned to Data data member. More...
 
bool CanGetData (void) const
 Check if it is safe to call GetData method. More...
 
void ResetData (void)
 Reset Data data member. More...
 
const TDataGetData (void) const
 Get the Data member data. More...
 
TDataSetData (void)
 Assign a value to Data data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CUser_object_Base Tparent
 

Private Member Functions

 CUser_object (const CUser_object &value)
 Prohibit copy constructor and assignment operator. More...
 
CUser_objectoperator= (const CUser_object &value)
 
bool x_IsUnverifiedType (const string &val) const
 
bool x_IsUnverifiedType (const string &val, const CUser_field &field) const
 
void x_AddUnverifiedType (const string &val)
 
void x_RemoveUnverifiedType (const string &val)
 
bool x_IsUnreviewedType (const string &val) const
 
bool x_IsUnreviewedType (const string &val, const CUser_field &field) const
 
void x_AddUnreviewedType (const string &val)
 
void x_RemoveUnreviewedType (const string &val)
 
void x_SetRefGeneTrackingField (const string &field_name, const string &value)
 
const stringx_GetRefGeneTrackingField (const string &field_name) const
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 50 of file User_object.hpp.

Member Typedef Documentation

◆ Tparent

Definition at line 52 of file User_object.hpp.

◆ TRefGeneTrackingAccessions

Definition at line 334 of file User_object.hpp.

Member Enumeration Documentation

◆ ECategory

enums for implicit typing of user objects

general category

Enumerator
eCategory_Unknown 
eCategory_Experiment 

Definition at line 134 of file User_object.hpp.

◆ EExperiment

sub-category experiment

Enumerator
eExperiment_Unknown 
eExperiment_Sage 

Definition at line 140 of file User_object.hpp.

◆ ELabelContent

enum controlling what to return for a label this mirrors a request inside of feature::GetLabel()

Enumerator
eType 
eContent 
eBoth 

Definition at line 119 of file User_object.hpp.

◆ EObjectType

Object Type.

Enumerator
eObjectType_Unknown 
eObjectType_DBLink 
eObjectType_StructuredComment 
eObjectType_OriginalId 
eObjectType_Unverified 
eObjectType_ValidationSuppression 
eObjectType_Cleanup 
eObjectType_AutodefOptions 
eObjectType_FileTrack 
eObjectType_RefGeneTracking 
eObjectType_Unreviewed 

Definition at line 161 of file User_object.hpp.

◆ EParseField

how to interpret the value in the AddField() conversion functions below.

Enumerator
eParse_String 

Add string even if all numbers.

eParse_Number 

Parse a real or integer number, otherwise string.

Definition at line 60 of file User_object.hpp.

◆ ERefGeneTrackingStatus

Enumerator
eRefGeneTrackingStatus_Error 
eRefGeneTrackingStatus_NotSet 
eRefGeneTrackingStatus_PREDICTED 
eRefGeneTrackingStatus_PROVISIONAL 
eRefGeneTrackingStatus_INFERRED 
eRefGeneTrackingStatus_VALIDATED 
eRefGeneTrackingStatus_REVIEWED 
eRefGeneTrackingStatus_PIPELINE 
eRefGeneTrackingStatus_WGS 

Definition at line 219 of file User_object.hpp.

Constructor & Destructor Documentation

◆ CUser_object() [1/2]

CUser_object::CUser_object ( void  )
inline

constructor

Definition at line 374 of file User_object.hpp.

Referenced by SetCategory().

◆ ~CUser_object()

CUser_object::~CUser_object ( void  )

destructor

Definition at line 62 of file User_object.cpp.

◆ CUser_object() [2/2]

CUser_object::CUser_object ( const CUser_object value)
private

Prohibit copy constructor and assignment operator.

Member Function Documentation

◆ AddField() [1/13]

CUser_object & CUser_object::AddField ( const string label,
bool  value 
)

◆ AddField() [2/13]

CUser_object & CUser_object::AddField ( const string label,
const char *  value,
EParseField  parse = eParse_String 
)

Definition at line 211 of file User_object.cpp.

References AddField(), label, and rapidjson::value.

◆ AddField() [3/13]

CUser_object & CUser_object::AddField ( const string label,
const string value,
EParseField  parse = eParse_String 
)

add a data field to the user object that holds a given value

Definition at line 198 of file User_object.cpp.

References label, CUser_object_Base::SetData(), CUser_field_Base::SetLabel(), CUser_field::SetValue(), and rapidjson::value.

Referenced by CAutoSqlCustomField::AddDouble(), AddField(), CAutoSqlCustomField::AddInt(), CAutoSqlCustomField::AddIntArray(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CAutoSqlCustomField::AddString(), CAutoSqlCustomField::AddUint(), AlignModelToSeqalign(), CConvertComment::ApplyToComment(), CSetGlobalRefGeneStatus::ApplyToCSeq_entry(), variation_ref::AttachAssertedSequence(), BOOST_AUTO_TEST_CASE(), CTableImportDataSource::ConvertToSeqAnnot(), CAnnotationASN1::CImplementationData::create_internal_feature(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CTableAnnotDataSource::CreateFeature(), CBlastFormatUtil::CreateSeqAnnotFromSeqAlignSet(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CWigObjectLoader::Execute(), CTableImportDataSource::ExportTableParms(), CBedAnnotAssembler::FinalizeAnnot(), CVDBGraphSeqIterator::GetAnnot(), CLoadStructComments::LoadSingle(), MakeCompartment(), CCSraAlignIterator::MakeMatchAnnotIndicator(), CBam2Seq_graph::MakeSeq_annot(), CAnnotationASN1::CImplementationData::model2spliced_seq_align(), CStructuredCommentPanel::OnExport(), CTableXformPanel::OnSaveImportParmsClick(), CPhyTreeView::OnSomethingEdited(), CRepeatToFeat::operator()(), CFastaReader::ParseDefLine(), variation_ref::CVariationUtil::PrecursorToProt(), CMicroArrayReader::ReadSeqAnnot(), CDemoSeqQaApp::Run(), s_AddUserObjectToSeqAlign(), s_CreateSeqAlign(), s_ModifySeqAlnWithFilteredSeqIDs(), s_UpdateField(), s_UpdateSeqAlnWithFilteredSeqIDs(), CDockManager::SaveLayout(), CDockContainer::SaveLayout(), CPhyloSelectionSet::SaveToUserObject(), CTreeLabel::SaveToUserObject(), CPhyloSelectionSetMgr::SaveToUserObject(), CGBenchService::SendAppFinish(), CGBenchService::SendAppStart(), CSeqUtils::SetAnnotShown(), SetCategory(), CEditingActionDescGenomeProjectId::SetValue(), CEditingActionDescUserObject::SetValue(), CEditingActionDescStructCommDbName::SetValue(), CEditingActionDescStructCommFieldName::SetValue(), sWindowPosToUserObject(), sx_GetMatchAnnotIndicator(), sx_SetZoomLevel(), CMacroFunction_ParseToStructComm::TheFunction(), CBLASTParams::ToUserObject(), CNetBlastJobDescriptor::ToUserObject(), CDockContainerDescr::ToUserObject(), CComplexRelation::ToUserObject(), CRelation::UserObjectFromRelation(), CTrackData::WriteToAnnot(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CVariationUtilities::x_AddRefAlleleFixFlag(), x_AddUnreviewedType(), x_AddUnverifiedType(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CMacroFunction_SetStructCommDb::x_MakeNewStructuredComment(), CGraphTrack::x_OnJobCompleted(), CShortReadFastaInputSource::x_ReadFastaOrFastq(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CASN1InputSourceOMF::x_ReadFromSingleFile(), CASN1InputSourceOMF::x_ReadFromTwoFiles(), CShortReadFastaInputSource::x_ReadFromTwoFiles(), CSraInputSource::x_ReadPairs(), CNetBLASTUIDataSource::x_SaveJobDescriptors(), CFeatureGenerator::SImplementation::x_SetComment(), CVariationNormalization_base< T >::x_SetShiftFlag(), CAttribTableColumnIdPanel::x_TableReaderMacro(), CBLASTParams::x_ToUserObject(), CReaderBase::xAddConversionInfo(), CBedReader::xAssignBedColumnCount(), CGvfReader::xFeatureSetExt(), CBedImportData::xInitializeRgb(), CBedImportData::xInitializeScore(), CGvfReader::xParseStructuredComment(), CVcfReader::xProcessFilter(), CVcfReader::xProcessFormat(), CVcfReader::xProcessHeaderLine(), CVcfReader::xProcessInfo(), CVcfReader::xProcessMetaLine(), CVcfReader::xProcessScore(), CBedReader::xSetFeatureColorDefault(), CBedReader::xSetFeatureColorFromItemRgb(), CBedReader::xSetFeatureColorFromScore(), CBedReader::xSetFeatureDisplayData(), CMicroArrayReader::xSetFeatureDisplayData(), CBedReader::xSetFeatureLocationBlock(), CBedReader::xSetFeatureLocationCds(), CBedReader::xSetFeatureLocationChrom(), CBedReader::xSetFeatureLocationGene(), CBedReader::xSetFeatureLocationRna(), CBedReader::xSetFeatureLocationThick(), and CBedReader::xSetFeatureScore().

◆ AddField() [4/13]

CUser_object & CUser_object::AddField ( const string label,
const vector< CRef< CUser_field > > &  value 
)

◆ AddField() [5/13]

CUser_object & CUser_object::AddField ( const string label,
const vector< CRef< CUser_object > > &  value 
)

◆ AddField() [6/13]

CUser_object & CUser_object::AddField ( const string label,
const vector< double > &  value 
)

◆ AddField() [7/13]

CUser_object & CUser_object::AddField ( const string label,
const vector< int > &  value 
)

◆ AddField() [8/13]

CUser_object & CUser_object::AddField ( const string label,
const vector< string > &  value 
)

◆ AddField() [9/13]

CUser_object & CUser_object::AddField ( const string label,
CUser_object value 
)

◆ AddField() [10/13]

CUser_object & CUser_object::AddField ( const string label,
double  value 
)

◆ AddField() [11/13]

CUser_object & CUser_object::AddField ( const string label,
int  value 
)

◆ AddField() [12/13]

CUser_object & CUser_object::AddField ( const string label,
Int8  value 
)

◆ AddField() [13/13]

CUser_object & CUser_object::AddField ( const string label,
TGi  value 
)

◆ AddUnreviewedUnannotated()

void CUser_object::AddUnreviewedUnannotated ( )

◆ AddUnverifiedContaminant()

void CUser_object::AddUnverifiedContaminant ( )

◆ AddUnverifiedFeature()

void CUser_object::AddUnverifiedFeature ( )

◆ AddUnverifiedMisassembled()

void CUser_object::AddUnverifiedMisassembled ( )

◆ AddUnverifiedOrganism()

void CUser_object::AddUnverifiedOrganism ( )

◆ GetCategory()

CUser_object::ECategory CUser_object::GetCategory ( void  ) const

◆ GetExperiment()

const CUser_object & CUser_object::GetExperiment ( void  ) const

◆ GetExperimentType()

CUser_object::EExperiment CUser_object::GetExperimentType ( void  ) const

◆ GetField()

const CUser_field & CUser_object::GetField ( const string str,
const string delim = ".",
NStr::ECase  use_case = NStr::eCase 
) const

Access a named field in this user object.

This is a little sneaky in that it interprets a delimiter for recursion. This version will throw an exception if the field doesn't exist.

Definition at line 71 of file User_object.cpp.

References CConstRef< C, Locker >::Empty(), GetFieldRef(), NCBI_THROW, and str().

Referenced by CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CLDBlockGlyph::CLDBlockGlyph(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CDockContainerDescr::FromUserObject(), CComplexRelation::FromUserObject(), CBLASTParams::FromUserObject(), CConstSageData::GetCount(), GetDBLinkIDs(), CConstSageData::GetField(), CGenomeAnnotComment::GetGenomeBuildNumber(), CClonePlacementGlyph::GetLabel(), CGC_Replicon::GetMoleculeLabel(), CGC_Replicon::GetMoleculeLocation(), CGC_Replicon::GetMoleculeType(), CCommentItem::GetRefTrackStatus(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CConstSageData::GetTag(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSetMgr::InitFromUserObject(), CPhyloSelectionSet::InitFromUserObject(), CTreeLabel::InitializeFromUserObject(), CPhyTreeView::InitView(), CTestApplication::LoadTable(), MakeCompartments(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CReorderStructuredComment::reorder_comment_by_rule(), RestoreModelMethod(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_IsGenomeAnnotationStart(), s_PassesFilter(), CTreeLabel::SaveToUserObject(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), sWindowPosFromUserObject(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBLASTParams::x_FromUserObject(), CClonePlacementGlyph::x_GetCloneEnds(), CCommonComponentScorer::x_GetUserCompList(), CValidError_bioseq::x_HasPGAPStructuredComment(), CLDBlockJob::x_LoadFtable(), CNetBLASTUIDataSource::x_LoadJobDescriptors(), CBamRefSeqInfo::x_LoadRangesCov(), CGraphTrack::x_LoadSettings(), CAlignFilter::x_Query_Op(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CVcfWriter::x_WriteInit(), and CGtfWriter::xAssignFeatureMethod().

◆ GetFieldRef()

CConstRef< CUser_field > CUser_object::GetFieldRef ( const string str,
const string delim = ".",
NStr::ECase  use_case = NStr::eCase 
) const

Definition at line 84 of file User_object.cpp.

References NStr::Equal(), first(), NStr::fSplit_Tokenize, CUser_object_Base::GetData(), CUser_field::GetFieldRef(), CUser_field_Base::GetLabel(), CObject_id_Base::GetStr(), CUser_field_Base::IsSetLabel(), CObject_id_Base::IsStr(), ITERATE, NStr::Split(), and str().

Referenced by BOOST_AUTO_TEST_CASE(), CSnpBitfieldFactory::CreateBitfield(), CSnpBitfield2::CSnpBitfield2(), CGBDocument::DetachDataLoader(), GetField(), CUserFeatHandler::GetLabel(), NSnp::GetLength(), CSeq_annot_SplitInfo::GetName(), GetRefGeneTrackingAssembly(), GetRefGeneTrackingGenerated(), GetRefGeneTrackingIdenticalTo(), GetRefGeneTrackingStatus(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CSequenceTrack::GetTooltip(), HasField(), CSeqTableReader::Init(), CDiscrepancyContext::IsBGPipe(), CVariationNormalization::isFullyShifted(), CComment_rule::IsValid(), CTabularFormatter_BestPlacementGroup::Print(), CDemoApp::Run(), s_GetBoxStyle(), s_GetVcfAttribute(), s_Render_Feat_Evidence(), s_SeqDescCompare(), CBedWriter::WriteAnnot(), CFeatureItem::x_AddQualsRegion(), CClonePlacementGlyph::x_Draw(), CFlatGatherer::x_GetAnnotDescStrucCommentFromBioseqHandle(), x_GetRefGeneTrackingField(), CBamRefSeqInfo::x_LoadRangesCov(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetFiletrackURL(), CSeq_annot_Info::x_UpdateName(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureGenotypeData(), and CVcfWriter::x_WriteMeta().

◆ GetLabel()

void CUser_object::GetLabel ( string label,
ELabelContent  mode = eContent 
) const

Append a label to label.

The type defaults to content for backward compatibility

Definition at line 533 of file User_object.cpp.

References eBoth, eContent, eType, label, s_GetUserObjectContent(), and s_GetUserObjectType().

Referenced by s_GetContentLabel().

◆ GetObjectType()

CUser_object::EObjectType CUser_object::GetObjectType ( void  ) const

Definition at line 625 of file User_object.cpp.

References eObjectType_OriginalId, eObjectType_Unknown, NStr::EqualNocase(), CObject_id_Base::GetStr(), CUser_object_Base::GetType(), CUser_object_Base::IsSetType(), kOrigIdAltSpell, and label.

Referenced by BOOST_AUTO_TEST_CASE(), CheckAutoDefOptions(), CheckLocalId(), CDeflineGenerator::GenerateDefline(), CLocalIDField::GetApplyObjects(), CEditObjectSeq_desc::GetDescriptorType(), GetOptionsForSet(), GetRefGeneTrackingAssembly(), GetRefGeneTrackingGenerated(), GetRefGeneTrackingIdenticalTo(), GetRefGeneTrackingStatus(), CLocalIDField::GetVals(), IsAutodefOptions(), IsCleanup(), IsDBLink(), CLocalIDField::IsEmpty(), IsFileTrack(), IsOriginalId(), IsRefGeneTracking(), IsStructuredComment(), IsUnreviewed(), IsUnverified(), IsValidationSuppression(), CAutoDef::RegenerateDefLine(), CAutoDef::RegenerateSequenceDefLines(), s_AutoDefUserObjectFromBioseq(), CCleanup::s_CleanupDBLink(), CCleanup::s_CleanupStructuredComment(), s_GetOptionsForSet(), s_GetOriginalId(), s_IsGenomeAnnotationStart(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), CCleanup::s_RemoveEmptyFields(), CValidError_bioseqset::ShouldHaveNoDblink(), CPropagateDescriptors::ShouldStayInPlace(), CValidError_bioseq::ValidateWGSMaster(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), x_GetRefGeneTrackingField(), CMacroFunction_ParsedText::x_GetSpecialField(), CNewCleanup_imp::x_IsDBLinkUserObj(), CAutoDef::x_IsHumanSTR(), x_IsUnreviewedType(), x_IsUnverifiedType(), x_RemoveUnreviewedType(), x_RemoveUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), and CValidError_bioseq::x_ShowBioProjectWarning().

◆ GetRefGeneTrackingAssembly()

CUser_object::TRefGeneTrackingAccessions CUser_object::GetRefGeneTrackingAssembly ( ) const

◆ GetRefGeneTrackingCollaborator()

const string & CUser_object::GetRefGeneTrackingCollaborator ( ) const

◆ GetRefGeneTrackingCollaboratorURL()

const string & CUser_object::GetRefGeneTrackingCollaboratorURL ( ) const

◆ GetRefGeneTrackingGenerated()

bool CUser_object::GetRefGeneTrackingGenerated ( ) const

◆ GetRefGeneTrackingGenomicSource()

const string & CUser_object::GetRefGeneTrackingGenomicSource ( ) const

◆ GetRefGeneTrackingIdenticalTo()

CConstRef< CUser_object::CRefGeneTrackingAccession > CUser_object::GetRefGeneTrackingIdenticalTo ( ) const

◆ GetRefGeneTrackingStatus()

CUser_object::ERefGeneTrackingStatus CUser_object::GetRefGeneTrackingStatus ( ) const

◆ HasField()

bool CUser_object::HasField ( const string str,
const string delim = ".",
NStr::ECase  use_case = NStr::eCase 
) const

Verify that a named field exists.

Definition at line 138 of file User_object.cpp.

References GetFieldRef(), CConstRef< C, Locker >::GetPointer(), str(), and true.

Referenced by CScoreBuilder::AddTracebacks(), CSetGlobalRefGeneStatus::ApplyToCSeq_entry(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CGenomeAnnotComment::GetGenomeBuildNumber(), CClonePlacementGlyph::GetLabel(), CCommentItem::GetRefTrackStatus(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescStructCommDbName::GetValue(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSetMgr::InitFromUserObject(), CPhyloSelectionSet::InitFromUserObject(), CTreeLabel::InitializeFromUserObject(), CPhyTreeView::InitView(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CTestApplication::LoadTable(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), CTabularFormatter_AssemblyInfo::Print(), CReorderStructuredComment::reorder_comment_by_rule(), RestoreModelMethod(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_UpdateField(), CTreeLabel::SaveToUserObject(), CPhyloSelectionSetMgr::SaveToUserObject(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), CMacroFunction_ParseToStructComm::TheFunction(), CMacroFunction_SetStructCommDb::TheFunction(), CBedWriter::WriteAnnot(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBLASTParams::x_FromUserObject(), CClonePlacementGlyph::x_GetCloneEnds(), CCommonComponentScorer::x_GetUserCompList(), CValidError_bioseq::x_HasPGAPStructuredComment(), CGraphTrack::x_LoadSettings(), CValidError_bioseq::x_ShowBioProjectWarning(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CVcfWriter::x_WriteInit(), and CGtfWriter::xAssignFeatureMethod().

◆ IsAutodefOptions()

bool CUser_object::IsAutodefOptions ( ) const
inline

Definition at line 183 of file User_object.hpp.

References eObjectType_AutodefOptions, and GetObjectType().

◆ IsCleanup()

bool CUser_object::IsCleanup ( ) const
inline

Definition at line 182 of file User_object.hpp.

References eObjectType_Cleanup, and GetObjectType().

◆ IsDBLink()

bool CUser_object::IsDBLink ( ) const
inline

◆ IsFileTrack()

bool CUser_object::IsFileTrack ( ) const
inline

Definition at line 184 of file User_object.hpp.

References eObjectType_FileTrack, and GetObjectType().

◆ IsOriginalId()

bool CUser_object::IsOriginalId ( ) const
inline

Definition at line 179 of file User_object.hpp.

References eObjectType_OriginalId, and GetObjectType().

◆ IsRefGeneTracking()

bool CUser_object::IsRefGeneTracking ( ) const
inline

◆ IsSetRefGeneTrackingAssembly()

bool CUser_object::IsSetRefGeneTrackingAssembly ( ) const
inline

Definition at line 346 of file User_object.hpp.

References GetRefGeneTrackingAssembly().

◆ IsSetRefGeneTrackingCollaborator()

bool CUser_object::IsSetRefGeneTrackingCollaborator ( ) const
inline

Definition at line 252 of file User_object.hpp.

References GetRefGeneTrackingCollaborator().

Referenced by BOOST_AUTO_TEST_CASE().

◆ IsSetRefGeneTrackingCollaboratorURL()

bool CUser_object::IsSetRefGeneTrackingCollaboratorURL ( ) const
inline

Definition at line 259 of file User_object.hpp.

References GetRefGeneTrackingCollaboratorURL().

Referenced by BOOST_AUTO_TEST_CASE().

◆ IsSetRefGeneTrackingGenomicSource()

bool CUser_object::IsSetRefGeneTrackingGenomicSource ( ) const
inline

Definition at line 242 of file User_object.hpp.

References GetRefGeneTrackingGenomicSource().

Referenced by BOOST_AUTO_TEST_CASE().

◆ IsSetRefGeneTrackingIdenticalTo()

bool CUser_object::IsSetRefGeneTrackingIdenticalTo ( ) const
inline

Definition at line 340 of file User_object.hpp.

References GetRefGeneTrackingIdenticalTo(), and NULL.

Referenced by BOOST_AUTO_TEST_CASE().

◆ IsSetRefGeneTrackingStatus()

bool CUser_object::IsSetRefGeneTrackingStatus ( ) const
inline

◆ IsStructuredComment()

bool CUser_object::IsStructuredComment ( ) const
inline

◆ IsUnreviewed()

bool CUser_object::IsUnreviewed ( ) const
inline

Definition at line 186 of file User_object.hpp.

References eObjectType_Unreviewed, and GetObjectType().

Referenced by CDeflineGenerator::x_SetFlags().

◆ IsUnreviewedUnannotated()

bool CUser_object::IsUnreviewedUnannotated ( ) const

◆ IsUnverified()

bool CUser_object::IsUnverified ( ) const
inline

Definition at line 180 of file User_object.hpp.

References eObjectType_Unverified, and GetObjectType().

Referenced by BOOST_AUTO_TEST_CASE(), and CDeflineGenerator::x_SetFlags().

◆ IsUnverifiedContaminant()

bool CUser_object::IsUnverifiedContaminant ( ) const

◆ IsUnverifiedFeature()

bool CUser_object::IsUnverifiedFeature ( ) const

◆ IsUnverifiedMisassembled()

bool CUser_object::IsUnverifiedMisassembled ( ) const

◆ IsUnverifiedOrganism()

bool CUser_object::IsUnverifiedOrganism ( ) const

◆ IsValidationSuppression()

bool CUser_object::IsValidationSuppression ( ) const
inline

Definition at line 181 of file User_object.hpp.

References eObjectType_ValidationSuppression, and GetObjectType().

◆ operator=()

CUser_object& CUser_object::operator= ( const CUser_object value)
private

◆ RemoveNamedField()

bool CUser_object::RemoveNamedField ( const string field_name,
NStr::ECase  ecase = NStr::eCase 
)

◆ RemoveUnreviewedUnannotated()

void CUser_object::RemoveUnreviewedUnannotated ( )

Definition at line 875 of file User_object.cpp.

References x_RemoveUnreviewedType().

Referenced by CUnreviewedPanel::GetUser_object().

◆ RemoveUnverifiedContaminant()

void CUser_object::RemoveUnverifiedContaminant ( )

Definition at line 857 of file User_object.cpp.

References x_RemoveUnverifiedType().

Referenced by BOOST_AUTO_TEST_CASE(), and CUnverifiedPanel::GetUser_object().

◆ RemoveUnverifiedFeature()

void CUser_object::RemoveUnverifiedFeature ( )

Definition at line 821 of file User_object.cpp.

References x_RemoveUnverifiedType().

Referenced by BOOST_AUTO_TEST_CASE(), and CUnverifiedPanel::GetUser_object().

◆ RemoveUnverifiedMisassembled()

void CUser_object::RemoveUnverifiedMisassembled ( )

Definition at line 839 of file User_object.cpp.

References x_RemoveUnverifiedType().

Referenced by BOOST_AUTO_TEST_CASE(), and CUnverifiedPanel::GetUser_object().

◆ RemoveUnverifiedOrganism()

void CUser_object::RemoveUnverifiedOrganism ( )

Definition at line 803 of file User_object.cpp.

References x_RemoveUnverifiedType().

Referenced by BOOST_AUTO_TEST_CASE(), and CUnverifiedPanel::GetUser_object().

◆ ResetRefGeneTrackingAssembly()

void CUser_object::ResetRefGeneTrackingAssembly ( )

Definition at line 1306 of file User_object.cpp.

References kRefGeneTrackingAssembly, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingCollaborator()

void CUser_object::ResetRefGeneTrackingCollaborator ( )

Definition at line 1061 of file User_object.cpp.

References kRefGeneTrackingCollaborator, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingCollaboratorURL()

void CUser_object::ResetRefGeneTrackingCollaboratorURL ( )

Definition at line 1080 of file User_object.cpp.

References kRefGeneTrackingCollaboratorURL, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingGenerated()

void CUser_object::ResetRefGeneTrackingGenerated ( )

Definition at line 1111 of file User_object.cpp.

References kRefGeneTrackingGenerated, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingGenomicSource()

void CUser_object::ResetRefGeneTrackingGenomicSource ( )

Definition at line 1042 of file User_object.cpp.

References kRefGeneTrackingGenomicSource, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingIdenticalTo()

void CUser_object::ResetRefGeneTrackingIdenticalTo ( )

Definition at line 1263 of file User_object.cpp.

References kRefGeneTrackingIdenticalTo, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ ResetRefGeneTrackingStatus()

void CUser_object::ResetRefGeneTrackingStatus ( )

Definition at line 1022 of file User_object.cpp.

References kRefGeneTrackingStatus, and RemoveNamedField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ SetCategory()

CUser_object & CUser_object::SetCategory ( ECategory  category)

format a user object as a given type.

This returns a user-object that is suitable for containing whatever specifics might be needed

Definition at line 555 of file User_object.cpp.

References AddField(), CUser_object(), eCategory_Experiment, eCategory_Unknown, CUser_object_Base::Reset(), s_exp, s_expres, s_ncbi, CUser_object_Base::SetClass(), CObject_id_Base::SetStr(), and CUser_object_Base::SetType().

◆ SetExperiment()

CUser_object & CUser_object::SetExperiment ( EExperiment  category)

format a user object as a given type.

This returns a user-object that is suitable for containing whatever specifics might be needed

Definition at line 578 of file User_object.cpp.

References eExperiment_Sage, eExperiment_Unknown, CUser_object_Base::Reset(), s_ncbi, s_sage, CUser_object_Base::SetClass(), CObject_id_Base::SetStr(), and CUser_object_Base::SetType().

◆ SetField()

CUser_field & CUser_object::SetField ( const string str,
const string delim = ".",
const string obj_subtype = kEmptyStr,
NStr::ECase  use_case = NStr::eCase 
)

◆ SetFieldRef()

CRef< CUser_field > CUser_object::SetFieldRef ( const string str,
const string delim = ".",
const string obj_subtype = kEmptyStr,
NStr::ECase  use_case = NStr::eCase 
)

◆ SetFileTrackUploadId()

void CUser_object::SetFileTrackUploadId ( const string upload_id)

Definition at line 940 of file User_object.cpp.

References SetFileTrackURL().

Referenced by BOOST_AUTO_TEST_CASE().

◆ SetFileTrackURL()

void CUser_object::SetFileTrackURL ( const string url)

◆ SetObjectType()

void CUser_object::SetObjectType ( EObjectType  obj_type)

◆ SetRefGeneTrackingAssembly()

void CUser_object::SetRefGeneTrackingAssembly ( const TRefGeneTrackingAccessions acc_list)

◆ SetRefGeneTrackingCollaborator()

void CUser_object::SetRefGeneTrackingCollaborator ( const string collaborator)

Definition at line 1049 of file User_object.cpp.

References kRefGeneTrackingCollaborator, val, and x_SetRefGeneTrackingField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ SetRefGeneTrackingCollaboratorURL()

void CUser_object::SetRefGeneTrackingCollaboratorURL ( const string collaborator_url)

Definition at line 1068 of file User_object.cpp.

References kRefGeneTrackingCollaboratorURL, val, and x_SetRefGeneTrackingField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ SetRefGeneTrackingGenerated()

void CUser_object::SetRefGeneTrackingGenerated ( bool  val = true)

◆ SetRefGeneTrackingGenomicSource()

void CUser_object::SetRefGeneTrackingGenomicSource ( const string genomic_source)

Definition at line 1030 of file User_object.cpp.

References kRefGeneTrackingGenomicSource, and x_SetRefGeneTrackingField().

Referenced by BOOST_AUTO_TEST_CASE().

◆ SetRefGeneTrackingIdenticalTo()

void CUser_object::SetRefGeneTrackingIdenticalTo ( const CRefGeneTrackingAccession accession)

◆ SetRefGeneTrackingStatus()

void CUser_object::SetRefGeneTrackingStatus ( ERefGeneTrackingStatus  status)

◆ UpdateNcbiCleanup()

void CUser_object::UpdateNcbiCleanup ( int  version)

◆ x_AddUnreviewedType()

void CUser_object::x_AddUnreviewedType ( const string val)
private

◆ x_AddUnverifiedType()

void CUser_object::x_AddUnverifiedType ( const string val)
private

◆ x_GetRefGeneTrackingField()

const string & CUser_object::x_GetRefGeneTrackingField ( const string field_name) const
private

◆ x_IsUnreviewedType() [1/2]

bool CUser_object::x_IsUnreviewedType ( const string val) const
private

◆ x_IsUnreviewedType() [2/2]

bool CUser_object::x_IsUnreviewedType ( const string val,
const CUser_field field 
) const
private

◆ x_IsUnverifiedType() [1/2]

bool CUser_object::x_IsUnverifiedType ( const string val) const
private

◆ x_IsUnverifiedType() [2/2]

bool CUser_object::x_IsUnverifiedType ( const string val,
const CUser_field field 
) const
private

◆ x_RemoveUnreviewedType()

void CUser_object::x_RemoveUnreviewedType ( const string val)
private

◆ x_RemoveUnverifiedType()

void CUser_object::x_RemoveUnverifiedType ( const string val)
private

◆ x_SetRefGeneTrackingField()

void CUser_object::x_SetRefGeneTrackingField ( const string field_name,
const string value 
)
private

The documentation for this class was generated from the following files:
Modified on Tue Apr 16 20:13:15 2024 by modify_doxy.py rev. 669887