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Items: 1 to 20 of 816

1.

Global transcriptome of Arabidopsis plants (Col-0, Rld2 and Shahdara genotypes) inoculated by the fungal pathogen Sclerotinia sclerotiorum following temperate, mediterranean and continental acclimation

(Submitter supplied) The short-term, reversible process that allows plants to cope with immediate environmental fluctuations is often referred to as acclimation. Plant acclimation help maintain the balance of natural systems, supporting biodiversity and the services that ecosystems provide, such as carbon sequestration and water regulation. With climate change modifying the distribution area of plants and causing more frequent and severe weather events, knowledge of how plants acclimate can inform strategies to manage ecosystems and agriculture. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
54 Samples
Download data: TXT
Series
Accession:
GSE272240
ID:
200272240

2.

Transcriptome analysis reveals genes responsive to three low-temperature treatments in Arabidopsis thaliana

(Submitter supplied) Cold stress impedes the growth and development of plants, restricts the geographical distribution of plant species, and impacts crop productivity. In this study, we analyzed the Arabidopsis thali-ana transcriptome to identify genes with differential expression (DEGs) in 14-day-old plantlets exposed to temperatures of 0°C, 4°C, and 10°C for 24 h, compared to the 22°C control group. We found 31 genes shared among three low temperatures, with 9 genes common to 0°C-4°C, 8 genes to 4°C-10°C, and 2 genes to 0°C-10°C among the top 50 cold-induced genes from each tempera-ture. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
12 Samples
Download data: TAB
Series
Accession:
GSE278815
ID:
200278815

3.

RNA half-life regulation reveals countercyclical regulation of buffered RNAs and RNAs undergoing changes in abundance

(Submitter supplied) mRNA abundances are regulated by the opposing forces of transcription and decay, and yet how decay contributes to mRNA abundance regulation is largely unexplored. We addressed this question using genome-wide data on mRNA rates of abundance change, half-lives, and transcription rates of leaf cells responding to a transdifferentiation stimulusulus. Half-life regulation was common (22% of mRNAs underwent changes in half-life), but RNA abundance regulation by decay alone or by decay that supported transcriptional regulation was rare. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
24 Samples
Download data: CSV
Series
Accession:
GSE278544
ID:
200278544

4.

AtMBD9 ChIP-seq

(Submitter supplied) Using ChIP-seq to study the enrichment of AtMBD9 in Col-0 control plants and AtMBD9-3xMYC/atmbd9-2 transgenic line
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17639
8 Samples
Download data: BEDGRAPH
Series
Accession:
GSE126809
ID:
200126809

SRA Run Selector

5.

Whole genome bisulfite sequencing of arp6-5 and pie1-7 Arabidopsis mutants

(Submitter supplied) Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in arp6-5 and pie1-7 mutant
Organism:
Arabidopsis thaliana
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL17639
2 Samples
Download data: TXT
Series
Accession:
GSE122373
ID:
200122373

SRA Run Selector

6.

Anti-silencing mutants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platform:
GPL17639
11 Samples
Download data: WIG
Series
Accession:
GSE74349
ID:
200074349

7.

H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-5 and pie1-7

(Submitter supplied) Using ChIP-seq to study the deposition of H2A.Z in different anti-silencing mutants
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17639
5 Samples
Download data: WIG
Series
Accession:
GSE74348
ID:
200074348

SRA Run Selector

8.

MethlyC-Seq of WT (35S-SUC2) and anti-silencing mutants (arp6-5, pie1-7, h2a.z-2, idm1-9 and ros1-14)

(Submitter supplied) Using MethylC-Seq to provide single-base resolution of DNA methylation status in 35S-SUC2 WT and anti-silencing mutants( arp6-5, pie1-7, h2a.z-2, idm1-9 and ros1-14）
Organism:
Arabidopsis thaliana
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL17639
6 Samples
Download data: WIG
Series
Accession:
GSE74347
ID:
200074347

SRA Run Selector

9.

Evolutionary Conservation and Functional Role of the SWI/SNF Complex Protein BDH in Arabidopsis: Insights into Catalytic Subcomplex Stability and Biological Implications [ChIP-Seq]

(Submitter supplied) The SWI/SNF complexes play crucial roles in chromatin remodeling, with the protein BDH emerging as a key component in Arabidopsis. Through evolutionary analysis, we demonstrate the conservation of BDH function across mammals, yeast, and plants. Our study reveals that BDH is integral to the stability of the catalytic subcomplex within SWI/SNF assemblies. Furthermore, we elucidate the biological and molecular implications of BDH in Arabidopsis, highlighting its involvement in nucleosomal occupancy regulation. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17639
3 Samples
Download data: BW, NARROWPEAK
Series
Accession:
GSE268510
ID:
200268510

PubMed Full text in PMC Similar studies

10.

A plastidial lipoyl synthase LIP1p plays a crucial role in phosphate homeostasis in Arabidopsis

(Submitter supplied) Phosphate (Pi) homeostasis is important for plant growth and adaptation to dynamic environment, which requires the precise regulation of phosphate transporter (PHT) trafficking from endoplasmic reticulum to plasma membrane. LIPOYL SYNTHASE 1p (LIP1p) is known as a key enzyme in plastids to catalyze lipoylation of pyruvate dehydrogenase complex for de novo fatty acid synthesis. It is unknown whether this process is involved in regulating Pi homeostasis. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
6 Samples
Download data: XLS
Series
Accession:
GSE271819
ID:
200271819

11.

TRANSCRIPTIONAL AND HORMONAL DEFENCE-GROWTH TRADEOFFS DETERMINE PLANT SURVIVAL AND FITNESS UPON SPIDER MITE INFESTATION

(Submitter supplied) Tetranychus urticae is an important pest that causes severe damage on a wide variety of plants and crops, leading to a substantial loss of productivity. Previous research has focused on the study of Arabidopsis short-term response to T. urticae, but a comprehensive evaluation of the interaction through whole plant life cycle has not been previously studied. Here, through a physiological trait, transcriptomic and hormonomic evaluation we uncovered the molecular pathways directing the interaction of T. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
48 Samples
Download data: TXT
Series
Accession:
GSE255811
ID:
200255811

12.

GLABRA2 Transcription Factor integrates Arsenic tolerance with cell differentiation in Epidermal Cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17639 GPL23157
27 Samples
Download data: TAB
Series
Accession:
GSE255067
ID:
200255067

13.

GLABRA2 Transcription Factor integrates Arsenic tolerance with cell differentiation in Epidermal Cells [Exp1]

(Submitter supplied) Arsenic poses a global threat to living organisms, compromising crop security and yield. Limited understanding of the transcriptional network integrating arsenic tolerance mechanisms with plant developmental responses hinders the development of strategies against this menace. Here, we employed an integrative genomic approach in Arabidopsis thaliana, involving a high-throughput yeast one-hybrid assay, and a transcriptomic analysis coupled with a transcription factor binding site enrichment analysis in gene expression clusters, to uncover novel transcriptional regulators of the arsenic response. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
12 Samples
Download data: TAB
Series
Accession:
GSE255065
ID:
200255065

14.

Aluminum-induced terminal differentiation in Arabidopsis roots requires the stem cell niche transcription factor ETHYLENE RESPONSE FACTOR 115

(Submitter supplied) Aluminum-dependent stoppage of root growth and terminal differentiation depend on a functional DNA damage response pathway comprised of the master cell cycle checkpoint ATR (ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED) and p53-like transcription factor SOG1 (SUPPRESSOR OF GAMMA RADIATION 1). Mutational loss of either results in failure to trigger endoreduplication following Al treatment even in the Al-hypersensitive mutant, als3-1. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
18 Samples
Download data: TXT
Series
Accession:
GSE222336
ID:
200222336

15.

Transcriptome profiles of etiolated cotyledons exposed to ABA during seedling deetiolation.

(Submitter supplied) RNA-seq experiment of dark-grown cotyledons and cotyledons exposed to light for three hours in the absence or presence of absicic acid (ABA).
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
9 Samples
Download data: TAB
Series
Accession:
GSE273664
ID:
200273664

16.

Epigenetic reprogramming orchestrates transcriptional responses in shade avoidance memory of Arabidopsis

(Submitter supplied) An RNA-seq was conducted to investigate how REF6 and PIF7 participate in shade avoidance memory.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
24 Samples
Download data: TXT
Series
Accession:
GSE226745
ID:
200226745

PubMed Full text in PMC Similar studies

17.

Ethylene Responsive Factor 34 (ERF34) negatively mediates salt stress-induced leaf senescence by regulating the expression of salt stress-responsive genes in Arabidopsis

(Submitter supplied) Leaf senescence, the last step of leaf development which is important for plant’s fitness, proceeds with age but is modulated by various environmental stresses and hormones. Salt stress is one of the well-known environmental stresses that accelerate leaf senescence. However, the molecular mechanisms how the signal of salt stress is integrated into leaf senescence programs are still elusive. In this study, we characterized the function of an Arabidopsis APETALA 2/ETHYLENE RESPONSIVE FACTOR (AP2/ERF) family transcription factor, ERF34, in salt stress-induced leaf senescence. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
12 Samples
Download data: TXT
Series
Accession:
GSE180096
ID:
200180096

SRA Run Selector

18.

Epigenetic and transcriptional consequences of chemically induced transposon mobilization in the endosperm (RNA-Seq)

(Submitter supplied) Genomic imprinting, an epigenetic phenomenon leading to parent-of-origin-specific gene expression, has independently evolved in the endosperm of flowering plants and the placenta of mammals—tissues crucial for nurturing embryos. While transposable elements (TEs) frequently colocalize with imprinted genes and are implicated in imprinting establishment, direct investigations of the impact of de novo TE transposition on genomic imprinting remain scarce. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
6 Samples
Download data: TXT
Series
Accession:
GSE260821
ID:
200260821

PubMed Full text in PMC Similar studies

19.

Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis

(Submitter supplied) Genomic imprinting, an epigenetic phenomenon leading to parent-of-origin-specific gene expression, has independently evolved in the endosperm of flowering plants and the placenta of mammals-tissues crucial for nurturing embryos. While transposable elements (TEs) frequently colocalize with imprinted genes and are implicated in imprinting establishment, direct investigations of the impact of de novo TE transposition on genomic imprinting remain scarce. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL17639 GPL34120 GPL26208
40 Samples
Download data: TXT
Series
Accession:
GSE260822
ID:
200260822

PubMed Full text in PMC Similar studies

20.

Imprinting but not cytonuclear interactions affects parent-of-origin effect on seed size in Arabidopsis hybrids

(Submitter supplied) The parent-of-origin effect on seed size can result from imprinting or a combinational effect between cytoplasmic and nuclear genomes, but their relative contributions remain unknown. To discern these confounding effects, we generated cytoplasmic-nuclear substitution (CNS) lines using recurrent backcrossing in theArabidopsis thalianaecotypes Col-0 and C24. These CNS lines differ only in the nuclear genome (imprinting) or in the cytoplasm. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL19580 GPL17639 GPL26208
32 Samples
Download data: TSV
Series
Accession:
GSE249562
ID:
200249562

PubMed Similar studies

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