GEO DataSets

(Submitter supplied) Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

16 related Platforms

72 Samples

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(Submitter supplied) Contains a row for each intergenic cluster in each sample, indicating whether our analysis called the cluster "present" or "absent" in the sample. Intergenic clusters are novel (unannotated) genes detected by aligning Arabidopsis cDNAs/ESTs to the genome. Cluster coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

16 related Platforms

72 Samples

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(Submitter supplied) Contains a row for each annotated gene in each sample, indicating whether our analysis called the region antisense to the coding region of the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

16 related Platforms

72 Samples

Download data

(Submitter supplied) Contains a row for each annotated gene in each sample, indicating whether our analysis called the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

16 related Platforms

72 Samples

Download data

(Submitter supplied) Identification of new and unpredicted full length Arabidopsis genes. Examination of cRNA prepared from Arabidopsis thaliana ecotype Columbia light grown 7-day old seedlings, light grown 7-day old seedlings treated at 4 degrees C for 24hrs, and etiolated 7-day old seedlings using pilot genome tiling arrays. Total RNA was isolated from seedlings with the TRIzol reagent procedure of Invitrogen, then poly(A)+ RNA was purified with Qiagen oligotex. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

4 related Platforms

12 Samples

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(Submitter supplied) Examination of cRNA from Arabidopsis flowers, roots and suspension cell culture using custom high-density Affymetrix genome tiling arrays in order to identify new and unpredicted genes. Keywords: other

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

16 related Platforms

48 Samples

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(Submitter supplied) This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap using in situ synthesized 25 bp oligonucleotides. Perfect match and central position mismatch probes were made for these arrays. The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array. This chip tiles the first half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 2 that was chosen for these pilot arrays. more...

Organism:

Arabidopsis thaliana

6 Series

6 Samples

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