GSE131733[Accession] - GEO DataSets - NCBI

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Items: 16

Select item 2001317331.

Transient genome-wide adaptations of nascent RNAPII transcription triggered by low temperature

(Submitter supplied) We determined RNA polymerase (RNAPII) transcription at single-nucleotide resolution in Arabidopsis during early stages of exposure to low temperature. Our data inform on the dynamics of RNAPII transcription and detect thousands of often short-lived uncharacterized transcripts. We demonstrate that low temperature triggers transient genome-wide effects on RNAPII activity, in particular the stalling of RNAPII at both gene ends and the distance of read-through transcription.

Organism:: Arabidopsis thaliana

Type:: Other

Platforms:: GPL19580 GPL21785
13 Samples

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Series

Accession:: GSE131733

ID:: 200131733

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000217852.

Illumina HiSeq 4000 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

272 Series
6867 Samples

Platform

Accession:: GPL21785

ID:: 100021785

Select item 1000195803.

Illumina NextSeq 500 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

393 Series
9016 Samples

Platform

Accession:: GPL19580

ID:: 100019580

Select item 3038148574.

s13_WT_RT_mockIP

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of mock-IP

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814857

ID:: 303814857

SRA Run Selector

Select item 3038148565.

s12_WT_PlaB_rep2

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings treated with DMSO + PlaB

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814856

ID:: 303814856

SRA Run Selector

Select item 3038148556.

s11_WT_PlaB_rep1

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings treated with DMSO + PlaB

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814855

ID:: 303814855

SRA Run Selector

Select item 3038148547.

s10_WT_DMSO_rep2

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings treated with DMSO

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814854

ID:: 303814854

SRA Run Selector

Select item 3038148538.

s09_WT_DMSO_rep1

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings treated with DMSO

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814853

ID:: 303814853

SRA Run Selector

Select item 3038148509.

s06_WT_Cold_12h_rep2

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type exposed to 4⁰C for 12 hours

Platform:: GPL21785
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814850

ID:: 303814850

SRA Run Selector

Select item 30381484910.

s05_WT_Cold_12h_rep1

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type exposed to 4⁰C for 12 hours

Platform:: GPL21785
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814849

ID:: 303814849

SRA Run Selector

Select item 30381484811.

s04_WT_Cold_3h_rep2

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type exposed to 4⁰C for 3 hours

Platform:: GPL21785
Series:: GSE131733

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Sample

Accession:: GSM3814848

ID:: 303814848

SRA Run Selector

Select item 30381484712.

s03_WT_Cold_3h_rep1

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type exposed to 4⁰C for 3 hours

Platform:: GPL21785
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814847

ID:: 303814847

SRA Run Selector

Select item 30381484613.

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings grown at 22/18⁰C

Platform:: GPL21785
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814846

ID:: 303814846

SRA Run Selector

Select item 30381484514.

Organism:: Arabidopsis thaliana

Source name:: PlaNET-Seq of wild type seedlings grown at 22/18⁰C

Platform:: GPL21785
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814845

ID:: 303814845

SRA Run Selector

Select item 30381485915.

s15_TSS-Seq_hen2_RT_rep2

Organism:: Arabidopsis thaliana

Source name:: TSS-Seq of hen2-2 mutant grown at 22⁰C

Platform:: GPL19580
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814859

ID:: 303814859

SRA Run Selector

Select item 30381485816.

s14_TSS-Seq_hen2_RT_rep1

Organism:: Arabidopsis thaliana

Source name:: TSS-Seq of hen2-2 mutant grown at 22⁰C

Platform:: GPL19580
Series:: GSE131733

Download data: BW

Sample

Accession:: GSM3814858

ID:: 303814858

SRA Run Selector

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GSE131733[Accession] (16)
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