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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 28, 2016 |
| Title |
Illumina HiSeq 4000 (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Apr 28, 2016 |
| Last update date |
Oct 03, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (6838)
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GSM2136441, GSM2209777, GSM2209778, GSM2209779, GSM2209780, GSM2209781
GSM2209782, GSM2209783, GSM2209784, GSM2209785, GSM2209786, GSM2209787, GSM2209788, GSM2209789, GSM2209790, GSM2209791, GSM2209792, GSM2209793, GSM2209794, GSM2209795, GSM2209796, GSM2209797, GSM2209798, GSM2209799, GSM2209800, GSM2209801, GSM2209802, GSM2209803, GSM2209804, GSM2209805, GSM2209806, GSM2209807, GSM2209808, GSM2306313, GSM2306314, GSM2306315, GSM2306316, GSM2306317, GSM2306318, GSM2306323, GSM2306326, GSM2354119, GSM2354121, GSM2354122, GSM2354123, GSM2354124, GSM2354125, GSM2354127, GSM2388873, GSM2388875, GSM2388876, GSM2464894, GSM2464895, GSM2464896, GSM2464897, GSM2464898, GSM2464899, GSM2466695, GSM2466696, GSM2466697, GSM2466698, GSM2514731, GSM2514732, GSM2514733, GSM2514734, GSM2514735, GSM2514736, GSM2561483, GSM2561484, GSM2561485, GSM2561486, GSM2561487, GSM2561488, GSM2588524, GSM2588525, GSM2589441, GSM2589442, GSM2589443, GSM2589444, GSM2589445, GSM2643554, GSM2643555, GSM2643556, GSM2643557, GSM2643558, GSM2643559, GSM2643560, GSM2643561, GSM2643562, GSM2643563, GSM2643564, GSM2643565, GSM2643566, GSM2643567, GSM2643568, GSM2643569, GSM2643570, GSM2643571, GSM2644657, GSM2644658, GSM2644659, GSM2644660, GSM2644661, GSM2644662, GSM2644663, GSM2644664, GSM2644665, GSM2644666, GSM2644667, GSM2644668, GSM2644669, GSM2644670, GSM2644671, GSM2644672, GSM2648448, GSM2648449, GSM2648450, GSM2648451, GSM2648452, GSM2648453, GSM2648454, GSM2648455, GSM2648456, GSM2653246, GSM2653247, GSM2714749, GSM2714750, GSM2714751, GSM2714752, GSM2766519, GSM2766520, GSM2766521, GSM2766522, GSM2766523, GSM2766524, GSM2766525, GSM2766526, GSM2766527, GSM2766528, GSM2766529, GSM2766530, GSM2807190, GSM2807191, GSM2807192, GSM2807194, GSM2807195, GSM2809079, GSM2809080, GSM2809081, GSM2809082, GSM2809112, GSM2809113, GSM2809114, GSM2809115, GSM2809116, GSM2809117, GSM2809118, GSM2809119, GSM2809120, GSM2809121, GSM2809122, GSM2809123, GSM2813755, GSM2813756, GSM2813757, GSM2813758, GSM2813759, GSM2813760, GSM2813761, GSM2813762, GSM2813763, GSM2813764, GSM2813765, GSM2813766, GSM2813767, GSM2813768, GSM2813769, GSM2858388, GSM2858389, GSM2858390, GSM2862604, GSM2862605, GSM2862606, GSM2862607, GSM2862608, GSM2862609, GSM2862610, GSM2862611, GSM2862612, GSM2862613, GSM2862614, GSM2862615, GSM2862616, GSM2862617, GSM2862618, GSM2862619, GSM2862620, GSM2862621, GSM2862622, GSM2862623, GSM2862624, GSM2862625, GSM2862626, GSM2862627, GSM2862628, GSM2862629, GSM2862630, GSM2862631, GSM2862632, GSM2862633, GSM2862634, GSM2862635, GSM2862636, GSM2862637, GSM2862638, GSM2862639, GSM2862640, GSM2862641, GSM2862642, GSM2862643, GSM2862644, GSM2862645, GSM2862646, GSM2862647, GSM2862648, GSM2862649, GSM2862650, GSM2862651, GSM2862652, GSM2862653, GSM2862654, GSM2862655, GSM2862656, GSM2862657, GSM2862658, GSM2862659, GSM2862660, GSM2862661, GSM2862662, GSM2862663, GSM2862664, GSM2862665, GSM2862666, GSM2862667, GSM2862668, GSM2862669, GSM2862670, GSM2862671, GSM2862672, GSM2862673, GSM2862674, GSM2862675, GSM2862676, GSM2862677, GSM2862678, GSM2862679, GSM2862680, GSM2862681, GSM2862682, GSM2862683, GSM2862684, GSM2862685, GSM2879159, GSM2879160, GSM2879161, GSM2879162, GSM2879163, GSM2879164, GSM2879165, GSM2879166, GSM2879167, GSM2879168, GSM2879169, GSM2879170, GSM2897724, GSM2897725, GSM2897726, GSM2897727, GSM2897728, GSM2897729, GSM2897833, GSM2897834, GSM2897837, GSM2897838, GSM2897839, GSM2897840, GSM2897841, GSM2897842, GSM2897843, GSM2897844, GSM2897845, GSM2897846, GSM2897847, GSM2897848, GSM2897849, GSM2897852, GSM2897853, GSM2897856, GSM2897857, GSM2897858, GSM2897859, GSM2897860, GSM2897861, GSM2897862, GSM2897863, GSM2897864, GSM2897865, GSM2897866, GSM2897867, GSM2897868, GSM2897869, GSM2897870, GSM2897871, GSM2897872, GSM2897873, GSM2897874, GSM2897875, GSM2897876, GSM2897877, GSM2897878, GSM2897879, GSM2897880, GSM2897881, GSM2897882, GSM2897883, GSM2897884, GSM2897885, GSM2897886, GSM2897887, GSM2897888, GSM2915883, GSM2915884, GSM2915885, GSM2915886, GSM2915887, GSM2915888, GSM2916153, GSM2916154, GSM2916155, GSM2916156, GSM2916157, GSM2916158, GSM2916159, GSM2916160, GSM2932477, GSM2932478, GSM2932479, GSM2932480, GSM2932481, GSM2932482, GSM2932483, GSM2932484, GSM2934431, GSM2934432, GSM2934433, GSM2934434, GSM2934435, GSM2934436, GSM2934437, GSM2934438, GSM2934439, GSM2934440, GSM2934441, GSM2934442, GSM2934443, GSM2934444, GSM2934445, GSM2934446, GSM2934447, GSM2934448, GSM2934449, GSM2934450, GSM2934451, GSM2934452, GSM2934453, GSM2934454, GSM2934455, GSM2934456, GSM3094152, GSM3094153, GSM3094154, GSM3094155, GSM3121158, GSM3121159, GSM3121160, GSM3121161, GSM3121162, GSM3121163, GSM3130575, GSM3130576, GSM3130577, GSM3130578, GSM3130579, GSM3130580, GSM3130581, GSM3130582, GSM3130583, GSM3130584, GSM3137762, GSM3137763, GSM3137764, GSM3137765, GSM3137766, GSM3137767, GSM3137768, GSM3137769, GSM3154469, GSM3154470, GSM3154471, GSM3162106, GSM3162107, GSM3162108, GSM3162109, GSM3162110, GSM3162111, GSM3164324, GSM3164325, GSM3172950, GSM3172951, GSM3172952, GSM3172953, GSM3172954, GSM3172955, GSM3172956, GSM3172957, GSM3172958, GSM3172959, GSM3172960, GSM3172961, GSM3172962, GSM3172963, GSM3172964, GSM3172965, GSM3172966, GSM3172967, GSM3172968, GSM3172969, GSM3227515, GSM3227516, GSM3227517, GSM3227518, GSM3227519, GSM3227520, GSM3227521, GSM3227522, GSM3227523, GSM3227524, GSM3227525, GSM3227526, GSM3227527, GSM3227528, GSM3227529, GSM3227530, GSM3242200, GSM3242201, GSM3242202, GSM3242203, GSM3242204, GSM3242205, GSM3243802, GSM3243803, GSM3243804, GSM3265768, GSM3265769, GSM3265770, GSM3265771, GSM3265772, GSM3265773, GSM3265774, GSM3265775, GSM3270840, GSM3270841, GSM3270842, GSM3270843, GSM3270844, GSM3270845, GSM3270846, GSM3270847, GSM3270848, GSM3270849, GSM3270850, GSM3270851, GSM3324321, GSM3324322, GSM3324323, GSM3324324, GSM3324325, GSM3324326, GSM3324327, GSM3324328, GSM3324329, GSM3330027, GSM3330028, GSM3330029, GSM3330030, GSM3330031, GSM3330032, GSM3330033, GSM3330034, GSM3330035...
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|
| Series (269)
|
| GSE47722 |
Maternal siRNAs mediate spatial and temporal regulation of gene expression and seed development in Arabidopsis |
| GSE80744 |
Epigenomic and genome structural diversity in a worldwide collection of Arabidopsis thaliana |
| GSE81597 |
DNA N6-adenine methylation in Arabidopsis thaliana |
| GSE83573 |
Ethylene induced phosphorylation of CBP20 is involved in root growth [RNA-seq] |
| GSE83574 |
Ethylene induced phosphorylation of CBP20 is involved in root growth [small RNA-seq] |
| GSE83575 |
Phosphorylation of CBP20 links microRNA to root growth in the ethylene response |
| GSE86583 |
Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis |
| GSE88907 |
Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence |
| GSE89789 |
DNA demethylation is initiated in the central cells of Arabidopsis and rice |
| GSE93910 |
Alternative splicing in Col-0 and sc35-scl mutant in Arabidopsis tlianaha |
| GSE94003 |
RNA-seq profiles of Arabidopsis thaliana wild-type and trm4b-4 |
| GSE94065 |
5-Methylcytosine RNA methylation in Arabidopsis thaliana |
| GSE95473 |
Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes [seq] |
| GSE96994 |
DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes |
| GSE97308 |
Aluminum Oxide Nanoparticles and Aluminum Ion Leading to Distinct Physiological and Molecular Responses in Arabidopsis thaliana |
| GSE98145 |
Sperm cells are passive cargo of the pollen tube in plant fertilization |
| GSE98214 |
Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis |
| GSE99404 |
Genome-wide DNA methylation profiles from Arabidopsis epiRILs, epiHybrids and Colombia wild type |
| GSE99481 |
Genome re-sequencing of Arabidopsis epiRILs and epiHybrids |
| GSE99482 |
Arabidopsis epiRILs, epiHybrids and Colombia wild type |
| GSE99600 |
Arabidopsis DXO1 links RNA turnover and chloroplast function independently of its enzymatic activity |
| GSE101762 |
Histone deacetylase SRT2 mediates ethylene-induced transcriptional repression through interaction with ENAP1 |
| GSE103326 |
MINIYO and QUATRE-QUART 2 Are Required for the Assembly of RNA Polymerase V in Arabidopsis |
| GSE104860 |
Pumilio-Homology Domain protein APUM9 regulates seed dormancy via decapping-dependent mRNA decay |
| GSE104868 |
The genomes uncoupled dependent signaling pathway coordinates plastid biogenesis with the synthesis of anthocyanins |
| GSE105000 |
Genome-wide bisulphite sequencing of Arabidopsis thaliana embryo and endosperm |
| GSE106962 |
DNA N6-adenine methylation in 3-week-old Arabidopsis thaliana [RNA-seq] |
| GSE107203 |
Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration |
| GSE107786 |
The Arabidopsis homolog of human G3BP1 is a key regulator of stomatal and aploplastic immunity |
| GSE108401 |
The Complex Architecture of Transgene Insertions |
| GSE108414 |
A DNA methylation reader complex that enhances gene transcription |
| GSE108912 |
Ethylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway. |
| GSE108932 |
Circadian Clock- and Transcription-controlled Genome-wide Excision Repair of UV Damage in Arabidopsis |
| GSE108960 |
Genome-wide occupancy of histone H3K27 methyltransferases CURLY LEAF and SWINGER in Arabidopsis seedlings |
| GSE109122 |
Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression during blue light exposure in Arabidopsis |
| GSE109164 |
mRNA sequencing of msh1 memory line in Arabidopsis |
| GSE113029 |
Detection of siRNA movement in Arabidopsis thaliana using P19 under root cell layer specific expression |
| GSE113847 |
EML histone readers prevent seed development without fertilization |
| GSE114009 |
Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation |
| GSE114199 |
mRNA sequencing of samples coming from Translating Ribosome Affinity Purification (TRAP) using MSH1P::FLAG::RPL18 |
| GSE114995 |
Coordinated regulation of pre-mRNA splicing by the SFPS-RRC1 complex to promote photomorphogenesis in Arabidopsis |
| GSE115066 |
RNA-seq Analysis of the stem of Wild Type and HDT1 Transcriptomes |
| GSE115272 |
Effect of GA on PAC and PAO1 treated Arabidopsis seeds |
| GSE116287 |
Cytokinin modulates chromatin accessibility in a context-dependent manner through the type-B response regulators |
| GSE116517 |
Transcriptome analysis of the effect of the hsl2 mutation in root tips |
| GSE116614 |
High-throughput single cell transcriptome profiling of plant tissue |
| GSE116972 |
Chromatin changes in lateral organ founder cells of Arabidopsis thaliana detected by assay for transposase-accessible chromatin sequencing (ATAC-seq) |
| GSE117077 |
Arabidopsis spliceosome factor SmD3-b modulates immunity to Pseudomonas syringae infection |
| GSE118298 |
Morphological, physiological, transcriptomic and metabolomic responses of Arabidopsis leaves to prolonged warming and heat shock |
| GSE118427 |
Phytoplasma SAP11 homologs differentially modulate development and defence in Arabidopsis and maize via destabilization of specific TCPs |
| GSE118651 |
The Trihelix Transcription Factor GT2-like 1 (GTL1) promotes salicylic acid metabolism and regulates basal and bacterial effector-triggered Immunity |
| GSE118708 |
Transcriptome of the Arabidopsis mRNA export mutant aly1 and associated controls |
| GSE118709 |
Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls |
| GSE118854 |
The lamin-like LITTLE NUCLEI 1 (LINC1) regulates jasmonic acid signaling and innate immunity |
| GSE119325 |
RNA sequencing (RNA-seq) for identifing differentially expressed transcription factor genes during early plant growth |
| GSE119465 |
Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity |
| GSE119715 |
RNA-seq of WT, val1, val2, and val1 val2 14-day-old seedling in Arabidopsis |
| GSE119872 |
Identification of regulators of vascular proliferation |
| GSE120068 |
INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana. |
| GSE120519 |
Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation |
| GSE120709 |
Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA |
| GSE121407 |
RNA-seq Analysis of the stem of Wild Type and HDT1 Transcriptomes II |
| GSE122314 |
Epigenetic Control of a Multifunctional Stress Regulator |
| GSE122394 |
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts |
| GSE122525 |
mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [m6A_IP] |
| GSE122526 |
mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [smallRNAs] |
| GSE122528 |
mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana |
| GSE122687 |
High-throughput single-cell transcriptome profiling of plant cell types |
| GSE122804 |
Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress |
| GSE123013 |
Single-cell RNA-sequencing analysis of Arabidopsis roots |
| GSE123258 |
Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
| GSE123259 |
Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ChIPSeq_H2AZ] |
| GSE123260 |
Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ChIPSeq_H3Ac] |
| GSE123263 |
Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. |
| GSE123459 |
Oxygen-dependent proteolysis regulates the stability of angiosperm Polycomb Repressive Complex 2 subunit VERNALIZATION2 |
| GSE123561 |
Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [RNA-seq] |
| GSE123562 |
Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [ChIP-seq] |
| GSE123563 |
Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis |
| GSE123620 |
RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water. |
| GSE123621 |
RNA-Seq of Arabidopsis Col-0 and sid2 seedlings treated with L-Glu and urea |
| GSE123622 |
RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water, and Col-0 and sid2 seedlings treated with L-Glu and urea |
| GSE124546 |
Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis |
| GSE124608 |
Quantification of tRNA-derived fragments in Arabidopsis and rice |
| GSE124746 |
Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [WGBS] |
| GSE124747 |
Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq] |
| GSE124750 |
Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [ChIP-seq] |
| GSE125230 |
Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems |
| GSE125996 |
mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [nuclear fraction] |
| GSE126624 |
RNA-seq analysis of the stem of wild type and γVPE transcriptomes |
| GSE126889 |
Genome-wide occupancy of Arabidopsis SWI/SNF chromatin remodeler SPLAYED provides insights into its interplay with its close homolog BRAHMA and Polycomb proteins |
| GSE127986 |
NRP histone chaperones promote the removal of histone variant H2A.Z |
| GSE128426 |
RNAseq of Arabidopsis wild-type (WT)-expressing aequorin, card1-1 mutant (WT-expressing aequorin background), card1-2 mutant (WT-expressing aequorin background) in response to 10 minute DMBQ or DMSO treatment |
| GSE128510 |
RNA-seq of Arabidopsis wild-type (WT)-expressing aequorin and card1 mutants (WT-expressing aequorin background) in response to DMBQ. |
| GSE129343 |
mRNA sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis |
| GSE129736 |
siRNA in cer7, rst1 and ripr mutants |
| GSE129865 |
Multilevel modulation of light signaling by GIGANTEA regulates both the output and pace of the circadian clock |
| GSE130290 |
ChIP-seq of DRD1, DMS3 and RDM1 in Arabidopsis |
| GSE131542 |
SERRATE recruits the NEXT complex to control the levels of miRNA precursors in Arabidopsis |
| GSE131733 |
Transient genome-wide adaptations of nascent RNAPII transcription triggered by low temperature |
| GSE132169 |
UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants |
| GSE132415 |
Investigation of heat stress response by RNA-Seq in Arabidopsis |
| GSE132944 |
Regulation of plant DNA methylation by UV-B light in Arabidopsis |
| GSE133143 |
Organismal Benefits of Transcription Speed Control at Gene Boundaries |
| GSE133175 |
Reciprocal reprogramming of host and endophyte metabolic pathways upon symbiosis of Arabidopsis with Enterobacter sp. SA187 |
| GSE133618 |
Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes |
| GSE135711 |
In vivo nuclear RNA structurome reveals the RNA-structure regulation of mRNA processing in plants |
| GSE135957 |
Plant 22-nt siRNAs mediate translational repression and stress adaptation |
| GSE135959 |
Plant 22-nt siRNAs mediate translational repression and stress adaptation |
| GSE135978 |
H2AK121ub and H3K27me3 marks have different effects on nucleosome organization in Arabidopsis |
| GSE136038 |
Custom selection of reference genes for transcriptomic analysis |
| GSE136164 |
Plant 22-nt siRNAs mediate translational repression and stress adaptation |
| GSE137623 |
A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism |
| GSE137732 |
Circadian clock regulation of alternative splicing and alternative polyadenylation in Arabidopsis thaliana |
| GSE139296 |
PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics |
| GSE139941 |
Widespread dynamic DNA demethylation in response to heat stress in Arabidopsis |
| GSE140566 |
Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation |
| GSE140778 |
Cellular trajectory analysis links tissue maturation to cellular specialization in the plant meristem |
| GSE141730 |
Vascular transcription factors control epidermal responses to limiting phosphate conditions |
| GSE143634 |
Transcriptomic profile of the FERONIA mutant |
| GSE143635 |
Molecular mechanisms of Enterobacter sp. SA187 induced thermotolerance in Arabidopsis thaliana |
| GSE143760 |
PHOTOTROPIN 1 and 2 regulate photosynthesis and UV-induced oxidative stress and cell death |
| GSE143762 |
Novel Role of JAC1 in Influencing Photosynthesis, Stomatal Conductance, and Photooxidative Stress Signalling Pathway in Arabidopsis thaliana |
| GSE145795 |
Alterations in the transcriptome and translatome profiles of Arabidopsis pollen germinated under heat stress |
| GSE145884 |
Reprogramming of bacterial and plant sulfur metabolisms in Enterobacter sp. SA187-induced plant salt stress tolerance |
| GSE146189 |
Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| GSE146700 |
DRM2 mediates CHH DNA methylation via a substrate deformation mechanism |
| GSE146723 |
Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana |
| GSE146913 |
Broad non-coding transcription suggests genome surveillance by RNA Polymerase V |
| GSE146948 |
The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation |
| GSE147587 |
Endosperm and maternal-specific expression of EIN2 affects endosperm cellularization and seed size in Arabidopsis |
| GSE147589 |
Time course of brassinolide treatment on Arabidopsis seedlings |
| GSE148173 |
Noncoding RNA-mediated DNA methylation directs nucleosome positioning |
| GSE148512 |
22-nucleotide siRNAs mediate translational repression and trigger a silencing storm [es] |
| GSE148553 |
F-box protein CFK1 interacts with and destabilizes de novo DNA methyltransfease in Arabidopsis |
| GSE148753 |
RNA interference-independent reprogramming of DNA methylation in Arabidopsis |
| GSE148914 |
Relevance of Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis |
| GSE149840 |
CRISPR-based targeting of DNA methylation in Arabidopsis thaliana by a bacterial CG specific DNA methyltransferase. |
| GSE150605 |
Identification of genes regulated by the MADS transcription factor (TF), SEPALLATA3, in the context of the double sep1sep2 and triple sep1sep2sep3 mutant background, by RNA-Seq analysis |
| GSE151462 |
PRP8A and PRP8B spliceosome subunits act coordinately to control pollen tube attraction in Arabidopsis thaliana |
| GSE151616 |
Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing |
| GSE151749 |
The impact of cold priming on the light and cold regulation of gene expression in Arabidopsis thaliana |
| GSE151885 |
Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| GSE152940 |
NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis |
| GSE153103 |
Time-course RNA-seq analysis of salt resonse in Arabidopsis and Marchantia |
| GSE153159 |
Histone methyltransferases SDG25/ATX1 regulate heat stress memory by antagonizing DNA remethylation |
| GSE153612 |
Transcriptional responses of wild-type and abr1 mutant Arabidopsis plants to infection with Pseudomonas syringae |
| GSE154165 |
tRNA-seq and YAMAT-seq profiling the expressions of tRNA-derived fragments and tRNAs in plants |
| GSE155147 |
DET1-mediated COP1 regulation avoids HY5 activity over second-site targets to tune plant photomorphogenesis |
| GSE155304 |
Single cell level analysis of the Arabidopsis root transcriptome and chromatin accessibility |
| GSE155806 |
Analysis of differential gene expression in mutant and overexpressing lines of DNE1 |
| GSE155853 |
Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 3 days post infection |
| GSE156424 |
RNA-seq of Arabidopsis thaliana seedlings exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| GSE156425 |
RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST] |
| GSE156426 |
RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of commensal bacteria |
| GSE156491 |
RNA-Seq analysis was performed with total RNA isolated from Col-0 and mee45-1mutant siliques at 4 DAP |
| GSE156608 |
Active DNA demethylation regulates MAMP-triggered immunity in Arabidopsis |
| GSE157027 |
RNA-seq of Arabidopsis thaliana seedlings exposed to different communities of commensal bacteria [SSC] |
| GSE157443 |
The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| GSE157765 |
RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S |
| GSE157938 |
Transcriptome of 5-week-old Col-0 and isi1-2 distal leaves 13 in untreated controls or upon wounding leave 8 |
| GSE158027 |
Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. |
| GSE158410 |
Differential alteration of plant functions by homologous fungal candidate effectors |
| GSE158780 |
Transcriptional responses of wild-type and zin1 mutant Arabidopsis plants to infection with Pseudomonas syringae |
| GSE159580 |
Transcriptome in WT Col-0 and RLK7ECD-MIK2TK transgenic plants upon PIP1 treatment |
| GSE160285 |
Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation |
| GSE161571 |
The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation |
| GSE163006 |
mRNA profiling of Trihelix transcription factor ASIL mutants in seedlings |
| GSE163007 |
mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| GSE163009 |
mRNA profiling of Trihelix transcription factor ASIL mutants |
| GSE164601 |
The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [ncRNA-seq] |
| GSE165095 |
MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO |
| GSE165574 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (smallRNA-seq dataset) |
| GSE165575 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation |
| GSE166301 |
Transcriptome in WT Col-0 and mik2-1 mutant upon SCOOP12 treatment. |
| GSE166879 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [ChIP-seq_10_12_14] |
| GSE166880 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [ChIP-seq_25] |
| GSE166882 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [DNA-seq] |
| GSE166883 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_2_3] |
| GSE166884 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_5_6] |
| GSE166885 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_9_12] |
| GSE166886 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_11] |
| GSE166887 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq-12_13] |
| GSE166888 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_15] |
| GSE166890 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16] |
| GSE166891 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_17-18] |
| GSE166892 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_20] |
| GSE166896 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_med] |
| GSE166897 |
The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis |
| GSE167135 |
Single-Cell Resolution of Lineage Trajectories in the Arabidopsis Stomatal Lineage and Developing Leaf |
| GSE169171 |
Analysis of mRNA-derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana |
| GSE171536 |
Pathogen induced m6A dynamics regulate plant immunity |
| GSE171805 |
FVE regulates DNA methylation levels at a subset of RdDM loci. |
| GSE171865 |
The effect of SEAP1 on the accumulation of miRNAs and mRNAs |
| GSE172328 |
RNA-seq analysis of Arabidopsis ATAF2 loss- and gain-of-function mutants |
| GSE173945 |
Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots |
| GSE174350 |
Methylome dynamic upon proteasome inhibition by the pseudomonas virulence factor Syringolin A |
| GSE174599 |
snRNA-seq of Arabidopsis thaliana flower meristems |
| GSE176451 |
Differentially expressed transcriptomes of NADases mutant in Arabidopsis |
| GSE178565 |
Mismatch hpRNA prevents intrinsic self-silencing and enhances RNAi stability |
| GSE179628 |
MKK4/5-MPK3/6 cascade regulates Agrobacterium-mediated transformation by modulating plant immunity in Arabidopsis |
| GSE179796 |
Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin |
| GSE179820 |
Non-cell autonomous and spatiotemporal signaling from a tissue organizer orchestrates root vascular development |
| GSE180380 |
REVEILLE5 buffers the activity of CIRCADIAN CLOCK ASSOCIATED1 to modulate thermoresponsive hypocotyl growth in Arabidopsis [RNA-seq] |
| GSE180382 |
REVEILLE5 buffers the activity of CIRCADIAN CLOCK ASSOCIATED1 to modulate thermoresponsive hypocotyl growth in Arabidopsis |
| GSE180635 |
Mechanistic basis for maintenance of CHG methylation in plants |
| GSE181432 |
Changs in Histone 3 Lysine 9 Acetylation (H3K9ac) in Arabidopsis seedlings in response to light |
| GSE181486 |
The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [ChIP-seq] |
| GSE181489 |
The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis |
| GSE182639 |
Arabidopsis COILIN orchestrates transcriptional as well as post-transcriptional regulation to combat pathogens |
| GSE183264 |
Improved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis |
| GSE184056 |
Role of m6A in cold stress response |
| GSE184355 |
Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency |
| GSE186842 |
Next generation sequencing analysis of Arabidopsis thaliana transcriptomes in response to Botrytis cinerea infection |
| GSE187461 |
Chromatin-associated Microprocessor assembly is regulated by PRP40 – U1 snRNP auxiliary protein |
| GSE188493 |
Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis |
| GSE188596 |
RNA-seq of Arabidopsis seedlings treated with chemical modifiers of sugar signalling at dawn |
| GSE190467 |
A Fungal Effector Suppresses the Nuclear Export of AGO1-miRNA Complex to Promote Infection in Plants |
| GSE190753 |
Profiling chromatin accessibility during stomatal development |
| GSE192383 |
Azospirillum brasilense alters root system architecture through both auxin-dependent and -independent pathways |
| GSE192607 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) [RIP-seq] |
| GSE192611 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) |
| GSE194404 |
Genetic effects on non-CG DNA methylation [Methyl-C-seq] |
| GSE194405 |
Genetic effects on non-CG DNA methylation [RNA-seq] |
| GSE194406 |
Genetic effects on non-CG DNA methylation |
| GSE196648 |
Next Generation Sequencing Facilitates Quantitative Analysis of WT and cry1cry2 mutant and cis1-1 mutant in dark and Blue light Transcriptomes |
| GSE197614 |
RTEL1 is involved in transcriptional gene silencing and inhibition of heterochromatic DNA methylation |
| GSE197747 |
N6-adenine DNA-immunoprecipitation-based genomic profiling in eukaryotes |
| GSE197771 |
Transcriptome analyses of Pst DC3000-inoculated Arabidopsis thaliana Col-0 and 35S::CBP60g plants at normal and elevated temperature |
| GSE197891 |
Genome wide association study between segregate wild-type and homozygous mutant |
| GSE198206 |
RNAseq Quantitative Analysis of Arabidopsis Wild Type versus transcription factor dof4-1 mutant |
| GSE198286 |
Transcriptome-wide profiling of RNA N4-cytidine acetylation in Arabidopsis thaliana and Oryza sativa |
| GSE199212 |
Transcriptomic comparison between nlp2-2, nlp2-3, nlp7-1, nlp2-3 nlp7-1 mutants and WT. |
| GSE199590 |
G-protein mutants RNA-seq analysis of salt resonse in Arabidopsis and Marchantia |
| GSE201629 |
Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis |
| GSE202802 |
A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy |
| GSE204681 |
Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting the JMJ14 complex |
| GSE206966 |
Identification of glutamine-regulated genes in Arabidopsis seedlings |
| GSE210860 |
A complex role of Arabidopsis CDKD;3 in meiotic progression and cytokinesis |
| GSE211047 |
Genome-wide analyses of NPR1 and HAC1 direct targets in Arabidopsis |
| GSE212121 |
Transcriptomic analysis of the rpn12a-236 stay-green mutant |
| GSE212766 |
FIONA1-mediated methylation of the 3'UTR of FLC affects FLC transcript levels and flowering in Arabidopsis |
| GSE213557 |
RNA-seq analysis of Arabidopsis roots of Col-0, fls2 and UBQ10::mCitrine-IMA1 in response to +Fe, +Fe+flg22, -Fe and -Fe+flg22 |
| GSE213616 |
Single-cell profiling of complex plant responses to Pseudomonas syringae infection [bulk RNA-seq] |
| GSE213625 |
Single-cell profiling of complex plant responses to Pseudomonas syringae infection |
| GSE215755 |
A CYBDOM protein impacts iron homeostasis and primary root growth under phosphate deficiency in Arabidopsis |
| GSE217513 |
Control of white mold (Sclerotinia sclerotiorum) through plant mediated RNA interference |
| GSE217609 |
The role of H3K4me3 of low temperature memory in Arabidopsis |
| GSE217676 |
Next Generation Sequencing Facilitates Quantitative Analysis of WT and BES1-RNAi in dark and Green light Transcriptomes |
| GSE218645 |
Changes in the transcriptome of Arabidopsis thaliana after ethylene-mediated metabolic priming |
| GSE218846 |
Plant and aphid vector manipulation by a persistent plant virus |
| GSE220898 |
The PFYRE Subdomain in Master Growth Repressor DELLA is Essential for Its Association with Target Chromatin via Histone H2A Binding |
| GSE221679 |
The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. |
| GSE223278 |
The small RNA component of Arabidopsis phloem sap and its response to iron deficiency. |
| GSE225062 |
AtBRO1, BRO1-like domain-containing protein, modulates growth and abiotic stress responses in Arabidopsis |
| GSE228426 |
Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants [AGeRdDM sRNAseq] |
| GSE228431 |
Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants |
| GSE228514 |
A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants [ARE sRNAseq] |
| GSE228518 |
A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants |
| GSE232067 |
The nucleolar protein NOL12 is required for processing of large ribosomal subunit rRNA precursors in Arabidopsis |
| GSE233124 |
The PFYRE Subdomain in Master Growth Repressor DELLA is Essential for Its Association with Target Chromatin via Histone H2A Binding |
| GSE235511 |
A CYBDOM protein impacts iron homeostasis and primary root growth under phosphate deficiency in Arabidopsis |
| GSE236157 |
Analysis of early transcriptomic response of Arabidopsis seedlings under priming and heat shock |
| GSE236282 |
Nt-acetylation independent turnover of SQUALENE EPOXIDASE 1 by Arabidopsis DOA10-like E3 ligases |
| GSE236290 |
MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis |
| GSE237118 |
Identification of AtALKBH1A and AtALKBH1B as DNA N6-adenine demethylases in Arabidopsis thaliana |
| GSE237262 |
METTL4-mediated N6-methyladenine DNA modification regulates thermotolerance in Arabidopsis thaliana |
| GSE243222 |
Identification of early glutamine-responsive genes in Arabidopsis |
| GSE243671 |
Global repair is the primary nucleotide excision repair subpathway for the removal of pyrimidine-pyrimidone (6-4) damage from the Arabidopsis genome |
| GSE244902 |
A precise balance of TETRASPANIN1/TORNADO2 activity is required for vascular proliferation and ground tissue patterning in Arabidopsis |
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| Supplementary data files not provided |
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