GSE183453[Accession] - GEO DataSets - NCBI

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R-loop landscapes during parental-to-zygotic transition in zebrafish

(Submitter supplied) The R-loop is a common chromatin feature presented from prokaryotic to eukaryotic genomes and has been revealed to be involved in multiple cellular processes. Here, we developed a novel R-loop profiling technique, ULI-ssDRIP-seq, to decte global R-loops from a limited number of cells. Based on this method, we profiled the R-loop landscapes during parental-to-zygotic transition and early development regulatory in zebrafish, and revealed a series of important characters of R-loops.

Organism:: Arabidopsis thaliana; Danio rerio; Escherichia coli; synthetic construct

Type:: Other; Expression profiling by high throughput sequencing

4 related Platforms
60 Samples

Download data: BW

Series

Accession:: GSE183453

ID:: 200183453

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000265262.

Illumina NovaSeq 6000 (synthetic construct)

Organism:: synthetic construct

94 Series
564 Samples

Platform

Accession:: GPL26526

ID:: 100026526

Select item 1000262083.

Illumina NovaSeq 6000 (Arabidopsis thaliana)

Organism:: Arabidopsis thaliana

514 Series
9289 Samples

Platform

Accession:: GPL26208

ID:: 100026208

Select item 1000253684.

Illumina NovaSeq 6000 (Escherichia coli)

Organism:: Escherichia coli

72 Series
1000 Samples

Platform

Accession:: GPL25368

ID:: 100025368

Select item 1000249955.

Illumina NovaSeq 6000 (Danio rerio)

Organism:: Danio rerio

396 Series
6386 Samples

Platform

Accession:: GPL24995

ID:: 100024995

Select item 3066453196.

MBN_ssDRIP_seq_artificial_hybrid

Organism:: Escherichia coli

Source name:: plasmid

Platform:: GPL25368
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM6645319

ID:: 306645319

SRA Run Selector

Select item 3080916437.

rnaseh1_MO_dome_rH2AX_stacc_seq_rep2

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM8091643

ID:: 308091643

SRA Run Selector

Select item 3080916428.

rnaseh1_MO_dome_rH2AX_stacc_seq_rep1

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM8091642

ID:: 308091642

SRA Run Selector

Select item 3080916419.

std_MO_dome_rH2AX_stacc_seq_rep2

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM8091641

ID:: 308091641

SRA Run Selector

Select item 30809164010.

std_MO_dome_rH2AX_stacc_seq_rep1

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM8091640

ID:: 308091640

SRA Run Selector

Select item 30744495811.

RNAseq_rnaseh1MO

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444958

ID:: 307444958

SRA Run Selector

Select item 30744495712.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444957

ID:: 307444957

SRA Run Selector

Select item 30744495613.

ULI-rnaseh1MO-2

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444956

ID:: 307444956

SRA Run Selector

Select item 30744495514.

ULI-rnaseh1MO-1

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444955

ID:: 307444955

SRA Run Selector

Select item 30744495415.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444954

ID:: 307444954

SRA Run Selector

Select item 30744495316.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444953

ID:: 307444953

SRA Run Selector

Select item 30744495217.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444952

ID:: 307444952

SRA Run Selector

Select item 30744495118.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444951

ID:: 307444951

SRA Run Selector

Select item 30744495019.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444950

ID:: 307444950

SRA Run Selector

Select item 30744494920.

Organism:: Danio rerio

Source name:: dome

Platform:: GPL24995
Series:: GSE183453

Download data: BW

Sample

Accession:: GSM7444949

ID:: 307444949

SRA Run Selector

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GSE183453[Accession] (65)
GEO DataSets
CJI96_0001241 [[Candida] auris]
CJI96_0001241 [[Candida] auris]
Gene ID:40026352

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