GSE46598[Accession] - GEO DataSets - NCBI

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Select item 2000465981.

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL11154 GPL10999 GPL6801
37 Samples

Download data: CEL, CNCHP

Series

Accession:: GSE46598

ID:: 200046598

PubMed Full text in PMC Similar studies

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10398 Series
180072 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1096 Series
9927 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 1000068014.

[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36) August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37) Protocol: see manufacturer's web site The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation. more...

Organism:: Homo sapiens

403 Series
22856 Samples

Platform

Accession:: GPL6801

ID:: 100006801

Select item 3012775985.

csc1_sc3__snp6.0

Organism:: Homo sapiens

Source name:: gastric cancer stem cell (csc1-clone3)

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1277598

ID:: 301277598

Select item 3012775976.

csc1_sc2__snp6.0

Organism:: Homo sapiens

Source name:: gastric cancer stem cell (csc1-clone2)

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1277597

ID:: 301277597

Select item 3011330077.

Organism:: Homo sapiens

Source name:: csc3-sc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133007

ID:: 301133007

Select item 3011330068.

Organism:: Homo sapiens

Source name:: csc3-n

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133006

ID:: 301133006

Select item 3011330059.

Organism:: Homo sapiens

Source name:: csc3-dc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133005

ID:: 301133005

Select item 30113300410.

Organism:: Homo sapiens

Source name:: csc2-n

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133004

ID:: 301133004

Select item 30113300311.

Organism:: Homo sapiens

Source name:: csc2-sc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133003

ID:: 301133003

Select item 30113300212.

Organism:: Homo sapiens

Source name:: csc2-dc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133002

ID:: 301133002

Select item 30113300113.

Organism:: Homo sapiens

Source name:: csc1-sc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133001

ID:: 301133001

Select item 30113300014.

Organism:: Homo sapiens

Source name:: csc1-dc

Platform:: GPL6801
Series:: GSE46594 GSE46598

Download data: CEL, CNCHP

Sample

Accession:: GSM1133000

ID:: 301133000

Select item 30127766515.

csc1_dc3_RNA-Seq

Organism:: Homo sapiens

Source name:: differentiated cell

Platform:: GPL11154
Series:: GSE46597 GSE46598

Sample

Accession:: GSM1277665

ID:: 301277665

SRA Run Selector

Select item 30127766416.

csc1_sc3_RNA-Seq

Organism:: Homo sapiens

Source name:: gastric cancer stem cell

Platform:: GPL11154
Series:: GSE46597 GSE46598

Sample

Accession:: GSM1277664

ID:: 301277664

SRA Run Selector

Select item 30127766317.

csc1_dc2_RNA-Seq

Organism:: Homo sapiens

Source name:: differentiated cell

Platform:: GPL11154
Series:: GSE46597 GSE46598

Sample

Accession:: GSM1277663

ID:: 301277663

SRA Run Selector

Select item 30127766218.

csc1_sc2_RNA-Seq

Organism:: Homo sapiens

Source name:: gastric cancer stem cell

Platform:: GPL11154
Series:: GSE46597 GSE46598

Sample

Accession:: GSM1277662

ID:: 301277662

SRA Run Selector

Select item 30127762119.

Organism:: Homo sapiens

Source name:: differentiated cell

Platform:: GPL11154
Series:: GSE46595 GSE46598

Sample

Accession:: GSM1277621

ID:: 301277621

SRA Run Selector

Select item 30127762020.

Organism:: Homo sapiens

Source name:: gastric cancer stem cell

Platform:: GPL11154
Series:: GSE46595 GSE46598

Sample

Accession:: GSM1277620

ID:: 301277620

SRA Run Selector

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