GSM6337858[Accession] - GEO DataSets

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Items: 4

Select item 2002085611.

Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Plasmodium falciparum

Type:: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL21078 GPL26985
43 Samples

Download data: BEDGRAPH, NARROWPEAK, TXT

Series

Accession:: GSE208561

ID:: 200208561

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2002081312.

Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci [gene expression]

(Submitter supplied) The survival of malaria parasites in the changing human blood environment largely depends on their ability to alter gene expression by epigenetic mechanisms. The active state of Plasmodium falciparum clonally variant genes is associated with euchromatin characterized by the histone mark H3K9ac, whereas the silenced state is characterized by H3K9me3-based heterochromatin. However, the localization of the euchromatin-heterochromatin transitions associated with expression switches in different clonally variant genes has not been characterized. more...

Organism:: Plasmodium falciparum

Type:: Expression profiling by array

Platform:: GPL26985
18 Samples

Download data: TXT

Series

Accession:: GSE208131

ID:: 200208131

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000269853.

Agilent-085763 Pfalciparum15KArray_Sept18

(Submitter supplied) Based on designs 037237 (Llinas lab) and 084561 (Cortes lab), with some new probes added by Cortes lab. Arrays of this design have barcodes that begin with 16085763 or 2585763. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. more...