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Links from GEO DataSets

Items: 20

1.

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL14138 GPL14137
4 Samples
Download data: FA
Series
Accession:
GSE31344
ID:
200031344
2.

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
4 related Platforms
47 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE31577
ID:
200031577
3.

Single base resolution methylome of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep BS-Seq of two Ants: Camponotus floridanus and Harpegnathos saltator.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing
4 related Platforms
39 Samples
Download data: TXT
Series
Accession:
GSE31576
ID:
200031576
4.

Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL14137 GPL14138
4 Samples
Download data: BEDGRAPH
Series
Accession:
GSE31346
ID:
200031346
5.

High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
20 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE22680
ID:
200022680
6.

Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
10 Samples
Download data: FA
Series
Accession:
GSE22679
ID:
200022679
7.

Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
10 Samples
Download data: BEDGRAPH
Series
Accession:
GSE22678
ID:
200022678
8.

RNA-seq from Harpegnathos tissues and brain regions

(Submitter supplied) Transcriptome sequencing of Harpegnathos ovary, fat body, antenna, non-visual brain, optic lobe, and retina
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
18 Samples
Download data: RPKM
Series
Accession:
GSE112843
ID:
200112843
9.

RNA-seq from Camponotus and Harpegnathos ants for genome annotation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22089 GPL20286
47 Samples
Download data
Series
Accession:
GSE102605
ID:
200102605
10.

Whole body RNA-seq from developmental stages of Harpegnathos ants

(Submitter supplied) RNA from Harpegnathos embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae, adult workers, and males was sequenced to look for gene expression changes throughout development.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
14 Samples
Download data: RPKM
Series
Accession:
GSE102604
ID:
200102604
11.

Whole body RNA-seq from developmental stages of Camponotus ants

(Submitter supplied) RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20286
15 Samples
Download data: RPKM
Series
Accession:
GSE102603
ID:
200102603
12.

A chromatin link to caste identity in the carpenter ant Camponotus floridanus

(Submitter supplied) The goal of this study was to assay the extent of variation in chromatin organization between 3 ant castes (major and minor female workers and males) in one colony of Camponotus floridanus carpenter ant using ChIPseq.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL15483 GPL14137
45 Samples
Download data: GTF, TXT
Series
Accession:
GSE37523
ID:
200037523
13.

Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees

(Submitter supplied) Honey bee non-CG DNA hydroxymethylation is enriched in the introns, which supplements previous findings that honey bee CG DNA methylation is enriched in exons.
Organism:
Apis mellifera scutellata; Apis mellifera
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL9909 GPL17742
8 Samples
Download data: BED, TXT, VCF
Series
Accession:
GSE50990
ID:
200050990
14.

Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus

(Submitter supplied) Comparison of transcriptome and histone acetylation in Camponotus floridanus minor scout brains following 45 day treatment with small molecule pharmacologicals. The goal of this study was to characterize the molecular changes in gene expression and histone modification caused by ad lib feeding small molecule HAT and HDAC inhibitors
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL14137 GPL20286
64 Samples
Download data: TXT, WIG
Series
Accession:
GSE69553
ID:
200069553
15.

Brain RNA-seq one day after knockdown of the corazonin receptor in Harpegnathos ants

(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of knockding down the corazonin receptor in the ant brain.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
36 Samples
Download data: TXT
Series
Accession:
GSE99130
ID:
200099130
16.

Caste-specific gene expression in ants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Monomorium pharaonis; Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
4 related Platforms
152 Samples
Download data
Series
Accession:
GSE83807
ID:
200083807
17.

Brain RNA-seq one day intra-head injection of corazonin or control peptide in Harpegnathos ants.

(Submitter supplied) This experiment aimed at determining the immediate (d1) transcriptional consequences of corazonin in the brain.
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22089
23 Samples
Download data: TXT, XLSX
Series
Accession:
GSE83806
ID:
200083806
18.

Brain RNA-seq during the worker-gamergate transitions in Harpegnathos ants

(Submitter supplied) Harpegnathos workers were induced to transition to reproductive gamergates and mRNA from their brains was sequenced to determine changes in gene expression at different time points (0, 6, 13, and 110 days after transition onset)
Organism:
Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14138
20 Samples
Download data: TXT
Series
Accession:
GSE83804
ID:
200083804
19.

RNA-seq in heads from Monomorium pharaonis nurses and foragers

(Submitter supplied) Replicate pools of heads from 10 individual Monomorium pharaonis workers, collected in the act of nursing larvae or foraging for food, each from a separate replicate colony
Organism:
Monomorium pharaonis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22090
23 Samples
Download data: TXT
Series
Accession:
GSE83803
ID:
200083803
20.

Whole-body RNA-seq from Camponotus floridanus workers and queen

(Submitter supplied) RNA-seq from whole bodies of workers (major and minor) and queen from C. floridanus to increase replicate number from 2010 genome study
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14137
3 Samples
Download data: TXT
Series
Accession:
GSE83799
ID:
200083799
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