Similar studies for GEO DataSets (Select 200076501) - GEO DataSets

Links from GEO DataSets

Items: 20

Select item 2000765011.

Transcriptome Profiling of the Rumen Epithelial Tissues of Beef Cattle Differing in Residual Feed Intake

(Submitter supplied) We functionally analyzed the rumen epithelial transcriptomes from low- and high- feed efficient beef steers to identify differences that might contribute to variation in feed efficiency.

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL15749
20 Samples

Download data: TXT

Series

Accession:: GSE76501

ID:: 200076501

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000840932.

Effects of selection on residual feed intake and diet on gene expression

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
96 Samples

Download data: TXT

Series

Accession:: GSE84093

ID:: 200084093

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000840923.

Effects of selection on residual feed intake and diet on gene expression in pig skeletal muscle

(Submitter supplied) Transcriptional profiling in skeletal muscle of 48 pigs (132 days of age) originated from two lines divergently selected for residual feed intake (RFI) : low-RFI pigs (RFIneg), high-RFI pigs (RFIpl). Both lines were offered isocaloric and isoproteic diets with contrasted energy source and nutrients: low fat, low fiber (LF) diet or a high fat, high fiber (HF)diet during 10 weeks. Effects of RFI selection, diet and interaction between diet and line were investigated.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
48 Samples

Download data: TXT

Series

Accession:: GSE84092

ID:: 200084092

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000840914.

Effects of selection on residual feed intake and diet on gene expression in pig liver

(Submitter supplied) Transcriptional profiling in liver of 48 pigs (132 days of age) originated from two lines divergently selected for residual feed intake (RFI) : low-RFI pigs (RFIneg), high-RFI pigs (RFIpl). Both lines were offered isocaloric and isoproteic diets with contrasted energy source and nutrients: low fat, low fiber (LF) diet or a high fat, high fiber (HF)diet during 10 weeks. Effects of RFI selection, diet and interaction between diet and line were investigated.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
48 Samples

Download data: TXT

Series

Accession:: GSE84091

ID:: 200084091

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000708395.

Effects of selection on residual feed intake and diet on gene expression in pig tissues

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
144 Samples

Download data: TXT

Series

Accession:: GSE70839

ID:: 200070839

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000708376.

Effects of selection on residual feed intake and diet on gene expression in pig perirenal adipose tissue

(Submitter supplied) Transcriptional profiling in peritoneal adipose tissue of 48 pigs (132 days of age) originated from two lines divergently selected for residual feed intake (RFI) : low-RFI pigs (RFIneg), high-RFI pigs (RFIpl). Both lines were offered isocaloric and isoproteic diets with contrasted energy source and nutrients: low fat, low fiber (LF) diet or a high fat, high fiber (HF)diet during 10 weeks. Effects of RFI selection, diet and interaction between diet and line were investigated.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
48 Samples

Download data: TXT

Series

Accession:: GSE70837

ID:: 200070837

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000708367.

Effects of selection on residual feed intake and diet on gene expression in pig subcutaneous adipose tissue

(Submitter supplied) Transcriptional profiling in subcutaneous adipose tissue of 48 pigs aged (132 days of age) originated from two lines divergently selected for residual feed intake (RFI) : low-RFI pigs (RFIneg), high-RFI pigs (RFIpl). Both lines were offered isocaloric and isoproteic diets with contrasted energy source and nutrients: low fat, low fiber (LF) diet or a high fat, high fiber (HF)diet during 10 weeks. Effects of RFI selection, diet and interaction between diet and line were investigated.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL16524
48 Samples

Download data: TXT

Series

Accession:: GSE70836

ID:: 200070836

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000923988.

RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-feed efficient Nordic dairy cattle

(Submitter supplied) The study investigated gene expression patterns in liver tissue to understand the biological functions of genes that are potentially involved in controlling / regulating feed efficiency in Nordic dairy cattle.

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19172
38 Samples

Download data: TXT

Series

Accession:: GSE92398

ID:: 200092398

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000711539.

Transcriptome differences in the rumen of beef steers with variation in feed intake and gain

(Submitter supplied) RNA sequencing (RNA-Seq) was performed on rumen papillae from 16 steers with variation in gain and feed intake.

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11153
16 Samples

Download data: TXT

Series

Accession:: GSE71153

ID:: 200071153

PubMed Similar studies SRA Run Selector

Select item 20011146410.

The effect of breed and diet on the liver transcriptome of beef steers divergent in RFI

(Submitter supplied) The objective of this work was to investigate differential gene expression of Charolais (n=90) and Holstein Freisian (n=77) steers divergent in RFI. The primary goal was to uncover genes and pathways associated with feed efficiency. Cattle were subjected to three different 70 day dietary phases. Initally animals were offered a high concentrate phase, termed "High Concentrate 1". Following this phase animals were offered sero grazed grass for 70 days followed by another high concentrate phase known as "High Concentrate 2". more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19172
90 Samples

Download data: CSV

Series

Accession:: GSE111464

ID:: 200111464

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006355011.

Ruminal transcriptomic analysis of grass-fed and grain-fed Angus beef cattle

(Submitter supplied) Beef represents a major diet component and one of the major sources of protein in human. The beef industry in the United States is currently undergoing changes and is facing increased demands especially for natural grass-fed beef. The grass-fed beef obtained their nutrients directly from pastures, which contained limited assimilable energy but abundant amount of fiber. On the contrary, the grain-fed steers received a grain-based regime that served as an efficient source of high-digestible energy. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL15749
4 Samples

Download data: TXT

Series

Accession:: GSE63550

ID:: 200063550

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20010747712.

Hepatic transcriptome analysis for differential gene expression between steers of divergent feed efficiency phenotypes in three Canadian beef breeds

(Submitter supplied) The objective of this study was to identify differentially expressed genes in the liver of steers with divergent Residual Feed Intake (RFI). Methods:In total 50 purebred Angus, 48 purebred Charolais and 158 Kinsella Composite breed steers were tested for individual feed intake using the GrowSafe system for an average period of 70 to 73 days. During the feedlot test animals were fed at ad libitum with a finishing diet composed of 75% barley grain, 20% barley silage and 5% rumensin pellet. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19172
60 Samples

Download data: TXT

Series

Accession:: GSE107477

ID:: 200107477

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20004776913.

Effect of selection on residual feed intake on gene expression in porcine skeletal muscle (115 kg body weight)

(Submitter supplied) Transcriptional profiling in liver of 24 pigs of 115 kg body weight from lines divergently selected for residual feed intake (RFI): low-RFI pigs fed ad libitum (RFIneg), high-RFI pigs fed ad libitum (RFIpl) and high-RFI pigs restricted at RFIneg feeding level (RFIplR) to investigate the impact of feeding independently of selection.

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL15007
23 Samples

Download data: TXT

Series

Accession:: GSE47769

ID:: 200047769

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20010726814.

RNA-seq of backfat tissue in beef cattle

(Submitter supplied) RNA-seq from backfat tissues were obatained from 22 steers, including Angus (AN; n=8), Charolais (CH; n=6), and Kinsella composite (KC; n=8). In each breed, cattle were classified two groups, i.e. high residual feed intake adjusted for off-test backfat thickness (RFIfat, RFIfat >= 0.5) and low RFIfat (RFIfat <= -0.5). For gene analysis, 46, 39 and 177 differentially expressed (DE) genes were identified in AN, CH and KC, respectively. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23295
22 Samples

Download data: TXT

Series

Accession:: GSE107268

ID:: 200107268

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20008987415.

Transcriptome analysis of ruminal epithelia revealed that potential regulatory mechanisms involved in host adaptation to rapid high fermentable dietary transition in beef cattle

(Submitter supplied) An abrupt transition from high forage to high fermentable diet may induce digestive disorders in the rumen. To date, the host mechanisms regulate the adaption to such dietary transition are largely unknown. To understand the molecular mechanisms involved in such phenomena, RNA-sequencing was performed to identify the changes in the transcriptomes of ruminal epithelia during a rapid high grain transition from 3% to 92% grain. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL15749
45 Samples

Download data: TXT

Series

Accession:: GSE89874

ID:: 200089874

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019806816.

Identification of key pathways associated with residual feed intake of beef cattle

(Submitter supplied) The biological mechanisms associated with the residual feed intake in ruminants have been harnessed immensely via transcriptome analysis of liver and ruminal epithelium, however, this concept has not been fully explored using whole blood. We applied whole blood transcriptome analysis and gene set enrichment analysis to identify key pathways associated with divergent selection for low or high RFI in beef cattle. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL32030
16 Samples

Download data: CSV

Series

Accession:: GSE198068

ID:: 200198068

PubMed Full text in PMC Similar studies

Select item 20003982417.

Expression data from Chicken duodenum

(Submitter supplied) The objective of this study was to decipher the molecular basis of feed efficiency in meat-type chicken using duodenum tissues from a chicken population divergently selected for residual feed intake (RFI). Residual feed intake is the deviation of expected feed intake from actual feed intake. Chickens that consume less feed than expected are efficient (LRFI) and chickens that consume more feed than expected are inefficient (HRFI). more...

Organism:: Gallus gallus

Type:: Expression profiling by array

Platform:: GPL3213
16 Samples

Download data: CEL

Series

Accession:: GSE39824

ID:: 200039824

Select item 20007369918.

Differential gene expression in the mesenteric fat among crossbred beef steers with divergent gain and feed intake phenotypes

(Submitter supplied) Steer mesenteric fat transcriptome. Evaluation of the naturally occurring transcriptome variation in mesenteric fat among beef steers with divergent gain and feed intake phenotypes.

Organism:: Bos taurus

Type:: Expression profiling by array

Platform:: GPL20768
15 Samples

Download data: CEL, CHP

Series

Accession:: GSE73699

ID:: 200073699

Select item 20011313519.

The effect of diet and breed on global gene expression profiles of animals divergent for RFI

(Submitter supplied) The selection of cattle with high feed efficiency is of paramount importance with regard to reducing feed costs in the beef industry. Developing predictive biological markers specifically for improved feed efficiency is an attractive alternative to direct measurement on large numbers of animals.Evidence is provided that, effects of RFI on gene expression in muscle of beef cattle are not consistent across breed type or dietary phase. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19172
111 Samples

Download data: TAB

Series

Accession:: GSE113135

ID:: 200113135

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20011279320.

An examination of the transcriptional control of energetic efficiency in cattle divergent for RFI

(Submitter supplied) The selection of cattle with high feed efficiency is of paramount importance with regard to reducing feed costs in the beef industry. Global gene expression patterns in metabolically important tissues can be used to identify genes that are potentially involved in regulating feed efficiency. We identified 5 genes (p<0.001;FDR <0.1) to be differentially expressed in skeletal skeletal muscle between high and low residual feed intake heifers with all 5 transcripts being upregulated in the low residual feed intake phenotype. more...

Organism:: Bos taurus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19172
40 Samples

Download data: TXT

Series

Accession:: GSE112793

ID:: 200112793

PubMed Full text in PMC Similar studies SRA Run Selector

GEO DataSets

Functional Genomics Studies

Result Filters

Entry type

Organism

Study type

Author

Attribute name

Publication dates

Custom date range

Additional filters

Send to:

Links from GEO DataSets

Items: 20

Send to:

Supplemental Content

Find related data

Important Links

Recent activity