GEO DataSets

(Submitter supplied) Heat-responsive and time-resolved changes in transcriptome of E. coli BL21(DE3) Experimentally mapped transcriptome structure of Escherichia coli BL21(DE3) by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 10 nt).

Organism:

Escherichia coli BL21(DE3)

Type:

Expression profiling by genome tiling array

Platform:

GPL22919

9 Samples

Download data: TXT

(Submitter supplied) Transcriptome analyses of the Escherichia coli cells acquired in the thermal adaptive evolution (Kishimoto et al, 2010, PLoS Genet) were performed. The ancestor strain (Anc) and the evolved strains (41B, 43B, 45L and 37L) were analyzed. The cells exponetially growing at the regular (37ºC) and/or evolutionary (41~45ºC) temperatures and in response to heat shock at 45ºC were collected for microarray analyses. more...

Organism:

Escherichia coli

Type:

Expression profiling by genome tiling array

Platform:

GPL13336

40 Samples

Download data: CEL, TXT

(Submitter supplied) Analysis of gene expression of mid log phase cultures of Escherichia coli Ancestor strain, and high temperature evolved lines 42-1, 42-2 and 42-3. Keywords: other

Organism:

Escherichia coli

Type:

Expression profiling by array

Dataset:

GDS1848

Platform:

GPL189

12 Samples

Download data

Analysis of 3 strains derived by growing the ancestral Bc251 strain for 2,000 generations at 41.5 degrees C. Cells grown to mid log-phase at 41.5 degrees C. Results provide insight into the role of heat-inducible genes in the genetic adaptation to long-term temperature stress.

Organism:

Escherichia coli

Type:

Expression profiling by array, count, 4 strain sets

Platform:

GPL189

Series:

GSE533

12 Samples

Download data

(Submitter supplied) We sequenced mRNA from leaves of Arabidopsis under the control (CK), warming (W) and heat (H) treatments using the Illumina HiSeq4000 platform to generate the transcriptome dynamics that may serve as a gene expression profile blueprint for different response patterns under prolonged warming versus rapid-onset heat stress in Arabidopsis.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21785

9 Samples

Download data: TXT

(Submitter supplied) A genome reduced E. coli strain MDS42 and its parent strain MG1655 were applied for the comparative transcriptome analysis. Genome-wide transcriptional changes due to genome reduction and heat shock were comprehensively evaluated.

Organism:

Escherichia coli

Type:

Expression profiling by genome tiling array

Platform:

GPL13336

20 Samples

Download data: CEL, TXT

(Submitter supplied) Warmer temperature is predicted to have negative effects on transition from vegetative to reproductive development in plants. The production of floral head in broccoli (Brassica oleracea var. italica) is dramatically reduced because of the high temperature stress. The broccoli inbred lines that are capable of producing head at high temperature in summer are unique varieties in Taiwan. However, knowledge of signalling pathway during the broccoli head formation under heat stress is limited. more...

Organism:

Brassica oleracea var. italica; Brassica napus

Type:

Expression profiling by array

Platform:

GPL15739

18 Samples

Download data: TXT

(Submitter supplied) We used microarrays to investigate the transcriptome of 6 days old male flies exposed to either 15 or 25 C development at either constant or fluctuating temperatures. Further, we investigated gene expression at benign (20C) and high (35C) temperatures With global climate change temperature means and variability are expected to increase. Thus, exposures to elevated temperatures are expected to become an increasing challenge for terrestrial ectotherm populations. more...

Organism:

Drosophila melanogaster

Type:

Expression profiling by array

Platform:

GPL1322

24 Samples

Download data: CEL

(Submitter supplied) The liver plays a central role in metabolism and is important in maintaining homeostasis throughout the body. This study integrated transcriptomic and metabolomic data to understand how the liver responds under chronic heat stress. Chickens from a rapidly growing broiler line were heat stressed for 8 hours per day for one week and liver samples were collected at 28 days post hatch. Transcriptome analysis reveals changes in genes responsible for cell cycle regulation, DNA replication, and DNA repair along with immune function. more...

Organism:

Gallus gallus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16133

16 Samples

Download data: TSV

(Submitter supplied) Southern California (USA) populations of the intertidal marine snail Chlorostoma (formerly Tegula) funebralis are generally exposed to higher air and water temperatures than northern California populations. Previous studies have shown that southern populations are more tolerant of heat stress than northern populations. To assess the potential role of gene regulation in these regional differences, we examined transcriptome responses to thermal stress in two southern and two northern populations of C. more...

Organism:

Tegula funebralis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18616

16 Samples

Download data: TXT

(Submitter supplied) We utilize ribosome profiling to directly monitor translation in E. coli at 30 °C and investigate how this changes after 10-20 minutes of heat shock at 42 °C. Translation is controlled by the interplay of several RNA hybridization processes, which are expected to be temperature sensitive. We observe that translation efficiencies are robustly maintained after thermal heat shock and after mimicking the heat shock response transcriptional program at 30 °C.

Organism:

Escherichia coli str. K-12 substr. MG1655

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15010

36 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

33 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

35 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

36 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

237 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

26 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

36 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

36 Samples

Download data: TXT

(Submitter supplied) This study aims to use omics data to understand the genetic pathways involved in heat stress adaptation. Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and the genetic selection appear as a potential solution. more...

Organism:

Sus scrofa

Type:

Expression profiling by array

Platform:

GPL19893

35 Samples

Download data: TXT

(Submitter supplied) Environmental fluctuations lead to a rapid adjustment of the physiology of Escherichia coli, necessitating changes on every level of the underlying cellular and molecular network. Thus far, the vast majority of global analyses of E. coli stress responses have been limited to just one level, gene expression. Here we incorporate the metabolite composition together with gene expression data in order to provide a more comprehensive insight on system level stress adjustments by describing detailed time-resolved E. more...

Organism:

Escherichia coli str. K-12 substr. MG1655

Type:

Expression profiling by array

Platform:

GPL10041

122 Samples

Download data: TXT