Similar studies for GEO DataSets (Select 200220125) - GEO DataSets

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Items: 18

Select item 2002201251.

Yeast meiotic transcriptom kar4 delete v. wild type

(Submitter supplied) Transcriptional profiling of wild type and kar4 deletion yeast mutants across a meiotic time course. Including samples with IME1 and RIM4 overexpression

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by array

Platform:: GPL19008
175 Samples

Download data: TXT, XLSX

Series

Accession:: GSE220125

ID:: 200220125

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2002214512.

Yeast meiotic transcriptional profile

(Submitter supplied) RNAseq across a time cours of meiosis of cells with and without Kar4p. The overexpression of either IME1 or both IME1 and RIM4 was used to determine how overexpression of the two genes functions to resuce the meiotic defect associated with the loss of Kar4p.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27812
72 Samples

Download data: XLSX

Series

Accession:: GSE221451

ID:: 200221451

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Select item 2002226843.

Yeast meiotic transcriptional profile [Kfc1p mutant]

(Submitter supplied) RNAseq across a time course of meiosis of cells with and without Kfc1p. The overexpression of either IME1 or both IME1 and RIM4 was used to determine how overexpression of the two genes functions to resuce the meiotic defect associated with the loss of Kar4p.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27812
64 Samples

Download data: XLSX

Series

Accession:: GSE222684

ID:: 200222684

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Select item 2002267694.

The Transcriptional Regulator Ume6 is a Major Driver of Gene Expression during Gametogenesis in Budding Yeast

(Submitter supplied) Early meiotic genes (EMGs) encompass an important subset within the developmental program of gametogenesis. Regulation of EMGs is achieved through the recognition of a common regulatory element in their promoters by the transcription factor Ume6. Proper meiotic execution requires the timely expression of EMGs, which is achieved through the adoption of the meiotic regulator Ime1 by Ume6. While it is known that Ime1’s binding to Ume6 promotes EMG expression, the mechanism of EMG activation remains unclear. more...

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27812
222 Samples

Download data: CSV

Series

Accession:: GSE226769

ID:: 200226769

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Select item 2002259635.

LUTI-dependent Downregulation of a Cell Cycle Transcription Factor is Key for Timely Meiotic Entry

(Submitter supplied) We used RNA-seq to monitor expression of early meiotic genes and expression of mitotic transcription factor SBF targets. Increased SBF activity was achieved through either overexpression of SBF unique subunit Swi4 , removal of LUTI-mediated regulation of Swi4 levels, or nuclear depeletion of negative regulator of SBF Whi5.

Organism:: Saccharomyces cerevisiae SK1

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33179
13 Samples

Download data: XLSX

Series

Accession:: GSE225963

ID:: 200225963

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Select item 2000895306.

RNA-SEQ analysis of bdf1-Y187F-Y354F mutant strain during yeast sporulation

(Submitter supplied) The aim of this study is to compare NGS-derived yeast transcriptome profiling (RNA-seq) of wild-type and bdf1-Y187F-Y354F mutant strains after sporulation induction (time points: 0h 4h and 8h).

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13821
18 Samples

Download data: TXT

Series

Accession:: GSE89530

ID:: 200089530

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2002248367.

The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Abstract: N6-methyladenosine (m6A), the most abundant mRNA modification, is deposited in mammals/insects/plants by m6A methyltransferase complexes (MTC) comprising a catalytic subunit and at least five additional proteins. The yeast MTC is critical for meiosis and was known to comprise three proteins, of which two were conserved. We uncover three novel MTC components (Kar4/Ygl036w-Vir1/Dyn2). more...

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL19756 GPL27812
215 Samples

Download data: RDS

Series

Accession:: GSE224836

ID:: 200224836

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Select item 2002248358.

The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [m6A-Seq]

(Submitter supplied) N6-methyladenosine (m6A), the most abundant mRNA modification, is deposited in mammals/insects/plants by m6A methyltransferase complexes (MTC) comprising a catalytic subunit and at least five additional proteins. The yeast MTC is critical for meiosis and was known to comprise three proteins, of which two were conserved. We uncover three novel MTC components (Kar4/Ygl036w-Vir1/Dyn2). All MTC subunits, except for Dyn2, are essential for m6A deposition and have corresponding mammalian MTC orthologs. more...

Organism:: Saccharomyces cerevisiae

Type:: Other

Platforms:: GPL27812 GPL19756
76 Samples

Download data: RDS

Series

Accession:: GSE224835

ID:: 200224835

PubMed Full text in PMC Similar studies

Select item 2002248339.

The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [RNA-Seq]

(Submitter supplied) N6-methyladenosine (m6A), the most abundant mRNA modification, is deposited in mammals/drosophila/plants by m6A methyltransferase complexes (MTC) comprising a catalytic subunit and at least five additional proteins. The yeast MTC is critical for meiosis but was known to comprise three proteins, of which two were conserved. We uncover three novel MTC components (Kar4/Ygl036w-Vir1/Dyn2). All MTC subunits, except for Dyn2, are essential for m6A deposition and have corresponding mammalian MTC orthologs. more...

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27812
139 Samples

Download data: BED, TAB

Series

Accession:: GSE224833

ID:: 200224833

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Select item 20020008910.

The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts.

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL19756 GPL21656
71 Samples

Download data: BW

Series

Accession:: GSE200089

ID:: 200200089

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Select item 20020008811.

The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts [CRAC]

(Submitter supplied) We performed CRAC (UV-crosslinking and analysis of cDNA) to identify Ime4-dependent mRNA targets of Pho92 during meiosis at 5 hr in SPO.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19756
8 Samples

Download data: BW, XLSX

Series

Accession:: GSE200088

ID:: 200200088

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Select item 20020008712.

The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts [RNA-seq]

(Submitter supplied) We performed high-throughput mRNA sequencing during a meiotic time course (0, 2, 3, 5, 6, 7 and 9 hr) in WT, pho92 mutant and ime4 mutant cells.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21656
63 Samples

Download data: XLSX

Series

Accession:: GSE200087

ID:: 200200087

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Select item 20001557013.

Effect of aging on the meiotic cell cycle

(Submitter supplied) Identify which stages of meiosis are impaired in replicative aging cells Transcriptional profile of aging yeast cells (young and old) incubated in sporulation-inducing conditions compared to new-born cells grown in vegetative conditions.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by array

Platform:: GPL7259
4 Samples

Download data: TXT

Series

Accession:: GSE15570

ID:: 200015570

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20013889814.

Transcription levels of a noncoding RNA orchestrate opposing regulatory and cell fate outcomes in yeast

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Saccharomyces cerevisiae

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL21656 GPL17342
30 Samples

Download data: BW

Series

Accession:: GSE138898

ID:: 200138898

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Select item 20013889715.

Transcription levels of a long noncoding RNA shape a cell fate regulatory circuit (TES-seq)

(Submitter supplied) Long noncoding RNAs (lncRNA) play diverse roles in gene regulation controlling key cellular processes, most notably, cell-fate programming {Anderson, 2016 #20;Flynn, 2014 #16;Guttman, 2011 #35;Wang, 2011 #18}. Many long noncoding RNAs (lncRNAs) act in cis through transcription-coupled chromatin alterations that drive changes in local gene expression { Martens, 2004 #47; Kim, 2012 #74;van Werven, 2012 #57;Hainer, 2011 #73;Kim, 2016 #41;Ard, 2016 #21;Latos, 2012 #7}. more...