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Platform GPL2875 Query DataSets for GPL2875
Status Public on Sep 24, 2005
Title Agilent-012795 C. elegans Oligo Microarray G2518A Option 002 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2518A Option 002
 
Description
Agilent has made available a new microarray with genome-wide coverage of C. elegans with over 21,000 predicted genes from WormBase, a public C. elegans genome database.

Arrays of this design have barcodes that begin with 16012795 or 2512795.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7272.
 
Submission date Sep 23, 2005
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (54) GSM182402, GSM182403, GSM182404, GSM182405, GSM182406, GSM182407 
Series (4)
GSE7535 Toxicogenomic Analysis of Caenorhabditis elegans Reveals Genes Involved in the Resistance to Cadmium Toxicity
GSE18200 Gene expression C. elegans age-1 mutants with neuron- or intestine-restricted age-1 activity
GSE18202 Variation in germline gene expression in cde-1 mutant
Relations
Alternative to GPL7272

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
ORF
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID ORF CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 105 215 BrightCorner --BrightCorner pos
2 105 214 NegativeControl --NegativeControl neg
3 105 213 T20D3.8 A_12_P117830 T20D3.8 FALSE wb|T20D3.8 chrIV:9342044-9341985
4 105 212 T01G6.3 A_12_P105863 T01G6.3 FALSE wb|T01G6.3 chrV:493277-493336 7TM chemoreceptor, str family [T01G6.3]
5 105 211 C37A2.6 A_12_P111791 C37A2.6 FALSE wb|C37A2.6 chrI:6796179-6795997
6 105 210 E1A_r60_n9 --E1A_r60_n9 pos
7 105 209 Pro25G --Pro25G pos
8 105 208 A_12_P115830 A_12_P115830 FALSE chrIII:012496479-012496538
9 105 207 F37A8.2 A_12_P115880 F37A8.2 FALSE wb|F37A8.2 chrIII:3929593-3929534
10 105 206 R04E5.8a A_12_P107993 R04E5.8a FALSE wb|R04E5.8a chrX:8801625-8801566
11 105 205 ZK430.7.3 A_12_P100069 ZK430.7.3 FALSE wb|ZK430.7.3|wb|ZK430.7.2|wb|ZK430.7.1 chrII:4422676-4422617 ribosomal processing protein [ZK430.7.3]
12 105 204 R08E5.1 A_12_P113456 R08E5.1 FALSE wb|R08E5.1 chrV:3770265-3770138
13 105 203 B0024.12 A_12_P118025 B0024.12 FALSE wb|B0024.12 chrV:10322313-10322254 Acetyltransferase (GNAT) family [B0024.12]
14 105 202 Pro25G --Pro25G pos
15 105 201 H40L08.1 A_12_P119221 H40L08.1 FALSE wb|H40L08.1 chrX:15081051-15080992
16 105 200 W05B2.5 A_12_P103764 W05B2.5 FALSE wb|W05B2.5 chrIII:10985457-10985398
17 105 199 Y51H4A.19 A_12_P119981 Y51H4A.19 FALSE wb|Y51H4A.19 chrIV:16678233-16678292
18 105 198 M110.1 A_12_P106023 M110.1 FALSE wb|M110.1 chrII:8207173-8207232 collagen [M110.1]
19 105 197 ZK337.4 A_12_P101681 ZK337.4 FALSE wb|ZK337.4 chrI:14993085-14993144
20 105 196 M05D6.2.3 A_12_P104416 M05D6.2.3 FALSE wb|M05D6.2.3|wb|M05D6.2.1|wb|M05D6.2.2 chrII:8469814-8469873 testis-specific like protein [M05D6.2.3]

Total number of rows: 22575

Table truncated, full table size 2159 Kbytes.






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