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Platform GPL4372 Query DataSets for GPL4372
Status Public on Sep 28, 2006
Title Rosetta/Merck Human 44k 1.1 microarray
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Rosetta Inpharmatics / Merck Pharmaceuticals
Manufacture protocol see manufacturer's web site
Description Oligonucleotide array on glass.
Contains 60-mer probes (60-mer).
Web link
Contributor(s) Kulkarni A, Castle J
Submission date Sep 28, 2006
Last update date Sep 28, 2006
Contact name Amit V Kulkarni
Phone 206-802-7352
Organization name Rosetta Inpharmatics / Merck Pharmaceuticals
Department Genomics
Lab Array Design
Street address 401 Terry Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
Samples (4579) GSM155601, GSM155602, GSM155603, GSM155604, GSM155605, GSM157096 
Series (28)
GSE6807 Genome-wide resources of endoribonucleotide-prepared short interfering RNAs for specific loss-of-function studies
GSE6838 Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression
GSE7864 A microRNA component of the p53 tumor suppressor network

Data table header descriptions
ID Rosetta generated unique probe identifier
EntrezGeneID Entrez Gene identifier for the gene represented
ORF Gene symbol for the gene represented
GB_ACC GenBank Accession
PROBE_DERIVED_FROM_TRANSCRIPT Actual transcript sequence from which the probe was derieved
RosettaGeneModelID Rosetta internal gene identifier.

Data table
10025930146 AA926913 non-public HSG00215848
10025930335 AK021661 AK021661 HSG00264429
10025913794 439911 AL832060 AL832060 HSG00269218
10023807248 23443 SLC35A3 NM_012243 non-public HSG00202393
10023809851 84056 KATNAL1 NM_001014380 non-public HSG00284910
10023809233 AI559539 AI559539_RC HSG00411589
10025911312 80059 LRRTM4 NM_024993 NM_024993 HSG00212388
10023815467 7148 TNXB NM_007116 NM_007116 HSG00243994
10025916454 28663 TRAV20 BC025727 non-public HSG00288142
10025918328 BC006563 BC006563 HSG00245643
10025925967 AA436683 non-public HSG00206318
10025919918 BE936939 non-public HSG00367661
10025908736 10333 TLR6 NM_006068 NM_006068 HSG00228258
10023817044 4642 MYO1D AB018270 AB018270 HSG00297986
10025906227 80156 NM_025086 NM_025086 HSG00274093
10025909224 126074 C19orf39 NM_175871 NM_175871 HSG00306121
10025927868 XM_212527 XM_212527 HSG00363278
10023806935 10407 SPAG11 NM_016512 NM_016512 HSG00258893
10025905605 5939 RBMS2 NM_002898 NM_002898 HSG00277464
10023827678 AJ243936 AJ243936 HSG00360903

Total number of rows: 39302

Table truncated, full table size 2071 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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